Gene Symbol | SYP |
Entrez Gene ID | 715739 |
Full Name | synaptophysin |
Gene Type | protein-coding |
Organism | Macaca mulatta(Rhesus monkey) |
ORF » Species Summary » Macaca mulatta » SYP cDNA ORF clone
Gene Symbol | SYP |
Entrez Gene ID | 715739 |
Full Name | synaptophysin |
Gene Type | protein-coding |
Organism | Macaca mulatta(Rhesus monkey) |
mRNA | Protein | Name |
---|---|---|
XM_028841830.1 | XP_028697663.1 | synaptophysin isoform X1 |
XM_015127342.1 | XP_014982828.1 | synaptophysin isoform X2 |
XM_015127341.1 | XP_014982827.1 | synaptophysin isoform X1 |
XM_015127341.2 | XP_014982827.1 | synaptophysin isoform X2 |
NM_001194329.1 | NP_001181258.1 | synaptophysin |
SYP | XP_001106095.2 | |
Homo sapiens (human) | SYP | NP_003170.1 |
Mus musculus (house mouse) | Syp | NP_033331.2 |
Xenopus tropicalis (tropical clawed frog) | syp | NP_001119974.1 |
Canis lupus familiaris (dog) | SYP | XP_005642145.1 |
Bos taurus (cattle) | SYP | NP_776388.1 |
Danio rerio (zebrafish) | sypa | NP_001137449.1 |
Rattus norvegicus (Norway rat) | Syp | NP_036796.1 |
Pan troglodytes (chimpanzee) | SYP | XP_521056.3 |
A new rhesus macaque assembly and annotation for next-generation sequencing analyses.
Zimin AV, Cornish AS, Maudhoo MD, Gibbs RM, Zhang X, Pandey S, Meehan DT, Wipfler K, Bosinger SE, Johnson ZP, Tharp GK, Mar?ais G, Roberts M, Ferguson B, Fox HS, Treangen T, Salzberg SL, Yorke JA, Norgren RB Jr
Biology direct9(1)20(2014 Oct)
Association of microtubule associated protein-2, synaptophysin, and apolipoprotein E mRNA and protein levels with cognition and anxiety levels in aged female rhesus macaques.
Haley GE, Eghlidi DH, Kohama SG, Urbanski HF, Raber J
Behavioural brain research232(1)1-6(2012 Jun)
Age-related decreases in SYN levels associated with increases in MAP-2, apoE, and GFAP levels in the rhesus macaque prefrontal cortex and hippocampus.
Haley GE, Kohama SG, Urbanski HF, Raber J
Age (Dordrecht, Netherlands)32(3)283-96(2010 Sep)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
In the amygdala, bold monkeys had higher levels of SYP mRNA than reserved monkeys
Title: Association of microtubule associated protein-2, synaptophysin, and apolipoprotein E mRNA and protein levels with cognition and anxiety levels in aged female rhesus macaques.
Synaptophysin decreases with age in the rhesus macaque brain similar to humans.
Title: Age-related decreases in SYN levels associated with increases in MAP-2, apoE, and GFAP levels in the rhesus macaque prefrontal cortex and hippocampus.
The following SYP gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the SYP cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | OMb04081 | |
Clone ID Related Accession (Same CDS sequence) | XM_015127341.1 , XM_015127341.2 , NM_001194329.1 | |
Accession Version | NM_001194329.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 942bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-12-11 | |
Organism | Macaca mulatta(Rhesus monkey) | |
Product | synaptophysin | |
Comment | Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from QNVO02003165.1. On Aug 11, 2010 this sequence version replaced XM_001106095.2. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments. ##Evidence-Data-START## Transcript exon combination :: SRR5038768.762584.1, SRR3476739.384880.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA4688346, SAMEA4688372 [ECO:0000348] ##Evidence-Data-END## |
1 | ATGCTGCTGC TGGCAGACAT GGACGTGGTG AATCAGCTGG TGGCTGGGGG TCAGTTCCGG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001181258.1 |
CDS | 69..1010 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001194329.1 |
1 | ATGCTGCTGC TGGCAGACAT GGACGTGGTG AATCAGCTGG TGGCTGGGGG TCAGTTCCGG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMb04081 | |
Clone ID Related Accession (Same CDS sequence) | XM_015127341.1 , XM_015127341.2 , NM_001194329.1 | |
Accession Version | XM_015127341.1 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 942bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2015-12-20 | |
Organism | Macaca mulatta(Rhesus monkey) | |
Product | synaptophysin isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_014805941.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Macaca mulatta Annotation Release 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.5 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGCTGCTGC TGGCAGACAT GGACGTGGTG AATCAGCTGG TGGCTGGGGG TCAGTTCCGG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_014982827.1 |
CDS | 70..1011 |
Translation |
Target ORF information:
Target ORF information:
|
XM_015127341.1 |
1 | ATGCTGCTGC TGGCAGACAT GGACGTGGTG AATCAGCTGG TGGCTGGGGG TCAGTTCCGG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMb04081 | |
Clone ID Related Accession (Same CDS sequence) | XM_015127341.1 , XM_015127341.2 , NM_001194329.1 | |
Accession Version | XM_015127341.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 942bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-04-25 | |
Organism | Macaca mulatta(Rhesus monkey) | |
Product | synaptophysin isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_041774.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Apr 23, 2019 this sequence version replaced XM_015127341.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Macaca mulatta Annotation Release 103 Annotation Version :: 103 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGCTGCTGC TGGCAGACAT GGACGTGGTG AATCAGCTGG TGGCTGGGGG TCAGTTCCGG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_014982827.1 |
CDS | 105..1046 |
Translation |
Target ORF information:
Target ORF information:
|
XM_015127341.2 |
1 | ATGCTGCTGC TGGCAGACAT GGACGTGGTG AATCAGCTGG TGGCTGGGGG TCAGTTCCGG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMb56154 | |
Clone ID Related Accession (Same CDS sequence) | XM_015127342.1 | |
Accession Version | XM_015127342.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 783bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2015-12-20 | |
Organism | Macaca mulatta(Rhesus monkey) | |
Product | synaptophysin isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_014805941.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Macaca mulatta Annotation Release 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.5 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGAGGAAGG GAGAAAACAA GGTTCAGATC CCAACTCTGA CATTCCCTTG CCAGCTGTGT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_014982828.1 |
CDS | 798..1580 |
Translation |
Target ORF information:
Target ORF information:
|
XM_015127342.1 |
1 | ATGAGGAAGG GAGAAAACAA GGTTCAGATC CCAACTCTGA CATTCCCTTG CCAGCTGTGT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMb93682 | |
Clone ID Related Accession (Same CDS sequence) | XM_028841830.1 | |
Accession Version | XM_028841830.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1044bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-04-25 | |
Organism | Macaca mulatta(Rhesus monkey) | |
Product | synaptophysin isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_041774.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Macaca mulatta Annotation Release 103 Annotation Version :: 103 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGCTGCTGC TGGCAGACAT GGACGTGGTG AATCAGCTGG TGGCTGGGGG TCAGTTCCGG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_028697663.1 |
CDS | 110..1153 |
Translation |
Target ORF information:
Target ORF information:
|
XM_028841830.1 |
1 | ATGCTGCTGC TGGCAGACAT GGACGTGGTG AATCAGCTGG TGGCTGGGGG TCAGTTCCGG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
A new rhesus macaque assembly and annotation for next-generation sequencing analyses. |
Association of microtubule associated protein-2, synaptophysin, and apolipoprotein E mRNA and protein levels with cognition and anxiety levels in aged female rhesus macaques. |
Age-related decreases in SYN levels associated with increases in MAP-2, apoE, and GFAP levels in the rhesus macaque prefrontal cortex and hippocampus. |