ldlCp cDNA ORF clone, Drosophila melanogaster(fruit fly)

Gene
Clones
gRNAs

Summary

Gene Symbol	ldlCp
Entrez Gene ID	41870
Full Name	ldlCp-related protein
Synonyms	CG6177,Cog2,Dmel\CG6177,ldl-Cp
General protein information	Preferred Names ldlCp-related protein Names CG6177 gene product from transcript CG6177-RA CG6177-PA ldlCp-PA
Gene Type	protein-coding
Organism	Drosophila melanogaster(fruit fly)
Genome	Chromosome: 3R Map Location: 88F1-88F1

mRNA and Protein(s)

mRNA	Protein	Name
NM_079642.3	NP_524366.1	ldlCp-related protein

Pathways from BioSystems

Homologies

Pan troglodytes (chimpanzee)	COG2	XP_001148147.1
Canis lupus familiaris (dog)	COG2	XP_546096.2
Arabidopsis thaliana (thale cress)	AT4G24840	NP_567710.1
Xenopus tropicalis (tropical clawed frog)	cog2	XP_004914700.1
	COG2	XP_002808309.1
Rattus norvegicus (Norway rat)	Cog2	NP_001103964.1
Drosophila melanogaster (fruit fly)	ldlCp	NP_524366.1
Caenorhabditis elegans (roundworm)	cogc-2	NP_501092.1
Homo sapiens (human)	COG2	NP_031383.1
Bos taurus (cattle)	COG2	NP_001070307.2
Mus musculus (house mouse)	Cog2	NP_084022.2
Gallus gallus (chicken)	COG2	XP_419583.2
Danio rerio (zebrafish)	cog2	NP_998519.1
Anopheles gambiae (African malaria mosquito)	AgaP_AGAP003824	XP_310386.6
Oryza sativa (rice)	Os03g0849600	NP_001051898.1

Gene Ontology
Bibliography

Related articles in PubMed

Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data.
Matthews BB, Dos Santos G, Crosby MA, Emmert DB, St Pierre SE, Gramates LS, Zhou P, Schroeder AJ, Falls K, Strelets V, Russo SM, Gelbart WM,
G3 (Bethesda, Md.)5(8)1721-36(2015 Jun)

Gene Model Annotations for Drosophila melanogaster: The Rule-Benders.
Crosby MA, Gramates LS, Dos Santos G, Matthews BB, St Pierre SE, Zhou P, Schroeder AJ, Falls K, Emmert DB, Russo SM, Gelbart WM,
G3 (Bethesda, Md.)5(8)1737-49(2015 Jun)

Sequence finishing and mapping of Drosophila melanogaster heterochromatin.
Hoskins RA, Carlson JW, Kennedy C, Acevedo D, Evans-Holm M, Frise E, Wan KH, Park S, Mendez-Lago M, Rossi F, Villasante A, Dimitri P, Karpen GH, Celniker SE
Science (New York, N.Y.)316(5831)1625-8(2007 Jun)

The Release 5.1 annotation of Drosophila melanogaster heterochromatin.
Smith CD, Shu S, Mungall CJ, Karpen GH
Science (New York, N.Y.)316(5831)1586-91(2007 Jun)

Combined evidence annotation of transposable elements in genome sequences.
Quesneville H, Bergman CM, Andrieu O, Autard D, Nouaud D, Ashburner M, Anxolabehere D
PLoS computational biology1(2)166-75(2005 Jul)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following ldlCp gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the ldlCp cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)	Select
OFa04990	NM_079642.3 Latest version!	Drosophila melanogaster ldlCp-related protein (ldlCp), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	12-14	$426.30 $609.00

ORF Online Only Promotion

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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

ldlCp ( NM_079642.3 ) cDNA ORF clone, Drosophila melanogaster(fruit fly) -> NP_524366.1 Drosophila melanogaster ldlCp-related protein (ldlCp), mRNA.

Price & Availability↑

CloneID	OFa04990
Clone ID Related Accession (Same CDS sequence)	NM_079642.3
Accession Version	NM_079642.3 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 2133bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2019-04-24
Organism	Drosophila melanogaster(fruit fly)
Product	ldlCp-related protein
Comment	Comment: REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NT_033777). On Jan 16, 2013 this sequence version replaced NM_079642.2. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.26 URL :: http://flybase.org ##Genome-Annotation-Data-END##

ATGCATGATC CGGTCAAAAA GTCGGCTCAC TTGACCGCTG GCTCCACCAG CACAGCGGAG 
AAGCTGTGCT TCGACAAGAA TGAGTTTATG AAGGCAAACT TCTCGGTGGA TGAGTTTCTG 
CACAAGAACC GCAATGCGCC CAGTCTGGAG CAGCTACGCG ACAACCTGGG CCTTTACCTC 
AAAGGTCTGC GGGCGGCCAT GATAGATTTG ATCAACGAGG ATTACGCAGA CTTCGTAAAC 
TTGAGCGCAA ACCTGGTGGG ACTGGACCAG AATATAAAGA CCATTCAACA GCCATTGGAG 
CAATTCCGCA GCGACATCGA GAGCATTCAC GGCTTGATAG ATGAGAACGT GACCGAGCTG 
CGGGCCCAGT TGGAGGAAAA GCGTCAGCTT CGCGAGTTCA AACGCGGTCT GCAGAGCCTC 
AAGAAAGTGT ATGAGACCAT TAACAAGCTT CAGGATCTAA TCGACCGAAA GCTCAGCGGG 
GAACAACCAA TTAAGGCCGT TGACCTGGAG CGCGCTGCTC TGGACCTGAT TCAATTGAAG 
TTCCATGAGA AACACTGTTT CAAGCACTTA AGTCCCGACC ATCAAGGGAA GATCCAACAG 
CTAGAAGAGC AATTGCATCA GCATCTGCGA CGCTTCTTCA ATGACGCCCT TAGCCAGGCA 
CGCAACTCGG CACCGGAATC CTTAGAGCGC TGCTTGCGGA TCTACATAAC TCTAAATGCC 
TGTGATCAGG CAGAGTGCGC CTTCCGCGAG GATGTGGTGG CACCGTATAT GACGGGCGTC 
ATTGGCGAAC AACAGTTGCA AAACTCGCCG CAGGGATTAG CTGGCATCTA CAGCAAGATC 
CTCAACTTTA TATCGCTGCA TATGACCGAT TTGCTGCGCC TTACGCTTTA CTCTGATAAG 
TTTCCGGGCT TTAACTTCGT GGTTAATAGT TACTGGTCTG ATGTGGAGAC GCGTCTCGAA 
CTGCACATGA ATTCCATATT TGCGCCTGGC AATTCGGAGG TGTTCTATGT AAAATACAAG 
TGCACTCGCG ATTTCCTGGG CAAAATAGAG GAGCTATTGA CCTGCTCCGG AGAGCAGGCC 
GTAACGTTCT ATCGCCAGCA CAAGCAAACA AAAAGTTTTG AGGCTCGCTG GAATCTTCCG 
GTTTACTTCC AAATATGCTT TCAAGAAATT GCTGGTAAAT TTGAAGCCCA GTTGGAGCCG 
GTGCTCCAGG AGGATAGTTT AAAAGATAAT CTCACCGATA GTGACTACAA AATATCCGCA 
TTTAATGCCG CGAAGGAGGC TATGACACGG TGCTGGGCCG AGGGAGTTTA CCTACCCGAA 
GTATTTCCGA AATTTTACAA ACTTAATGTG CAGGTGGTAC TGCGTCTTTC GCGCTGGATC 
ACGGATGCAA TTACTCAATC GAAAGGCAGC AACTTTTCTA AGCCCTACAC TCGAAACCAG 
TTGCTTATTG CCCTCCATGC TGACATTCGC AAACTTGACG CGCATCTGCC AGAGCTTCAG 
CAATTGATTA TTAAATCAGT GCCCGTTGAA CAGTGTACGA AGATCTTTAG CGACGTTTTG 
GCCAAATCGA TGTCCTGCCT AGCCGACACG CTAGGTGCGC ATTTGACCAA CATACAAAAG 
ACCTTAGTGG AGTTGCTGAT CGGAGAATGC GAGACGGAAA ATGTGCGACA GGTAAACGAC 
TTGCCGCGGC TGTATCGCAA GACGAATCGA GAGGTTCCCA CACGATGTTC GAGCTATGTG 
GAGCAAATGC TGCGACCGCT GAAGGCATTT GCCCAGCAGA ACGAGTCCCA GCTTGGCACC 
CTGGTGGTGG AACAAATCTT GGCGGAAGTT GCTAGTCACA TAACCAAGGC GTACTTCAAT 
GTGGTGAGCG ATGTGCTCAC ATCCGTACAG AAAACCGAGG AGTCATTGCG ACGCTTGCGA 
AATGTAAAAA GTGGCGGAGC CGCGACTGTT TCGACTGGAA GCTCGGCTGT AATGTCTGAC 
GATGATAAGA TTCGCGTCCA ACTGCGAGTG GATGTCACAT CCTGGAGGCA GGAGCTGTGC 
AAACTAAACT TTCAGGCCAC CCAGATCGAT AAGCTAGTCG AGCTGACAAA CATGGTGGAG 
GACAGTATCA AGCTAAAGGA TAACAGCGCT TAG

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_524366.1
CDS	81..2213
Translation	MHDPVKKSAHLTAGSTSTAEKLCFDKNEFMKANFSVDEFLHKNRNAPSLEQLRDNLGLYLKGLRAAMIDLINEDYADFVNLSANLVGLDQNIKTIQQPLEQFRSDIESIHGLIDENVTELRAQLEEKRQLREFKRGLQSLKKVYETINKLQDLIDRKLSGEQPIKAVDLERAALDLIQLKFHEKHCFKHLSPDHQGKIQQLEEQLHQHLRRFFNDALSQARNSAPESLERCLRIYITLNACDQAECAFREDVVAPYMTGVIGEQQLQNSPQGLAGIYSKILNFISLHMTDLLRLTLYSDKFPGFNFVVNSYWSDVETRLELHMNSIFAPGNSEVFYVKYKCTRDFLGKIEELLTCSGEQAVTFYRQHKQTKSFEARWNLPVYFQICFQEIAGKFEAQLEPVLQEDSLKDNLTDSDYKISAFNAAKEAMTRCWAEGVYLPEVFPKFYKLNVQVVLRLSRWITDAITQSKGSNFSKPYTRNQLLIALHADIRKLDAHLPELQQLIIKSVPVEQCTKIFSDVLAKSMSCLADTLGAHLTNIQKTLVELLIGECETENVRQVNDLPRLYRKTNREVPTRCSSYVEQMLRPLKAFAQQNESQLGTLVVEQILAEVASHITKAYFNVVSDVLTSVQKTEESLRRLRNVKSGGAATVSTGSSAVMSDDDKIRVQLRVDVTSWRQELCKLNFQATQIDKLVELTNMVEDSIKLKDNSA

Target ORF information:

RefSeq Version	NM_079642.3
Organism	Drosophila melanogaster(fruit fly)
Definition	Drosophila melanogaster ldlCp-related protein (ldlCp), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_079642.3

ORF Insert Sequence:

ATGCATGATC CGGTCAAAAA GTCGGCTCAC TTGACCGCTG GCTCCACCAG CACAGCGGAG 
AAGCTGTGCT TCGACAAGAA TGAGTTTATG AAGGCAAACT TCTCGGTGGA TGAGTTTCTG 
CACAAGAACC GCAATGCGCC CAGTCTGGAG CAGCTACGCG ACAACCTGGG CCTTTACCTC 
AAAGGTCTGC GGGCGGCCAT GATAGATTTG ATCAACGAGG ATTACGCAGA CTTCGTAAAC 
TTGAGCGCAA ACCTGGTGGG ACTGGACCAG AATATAAAGA CCATTCAACA GCCATTGGAG 
CAATTCCGCA GCGACATCGA GAGCATTCAC GGCTTGATAG ATGAGAACGT GACCGAGCTG 
CGGGCCCAGT TGGAGGAAAA GCGTCAGCTT CGCGAGTTCA AACGCGGTCT GCAGAGCCTC 
AAGAAAGTGT ATGAGACCAT TAACAAGCTT CAGGATCTAA TCGACCGAAA GCTCAGCGGG 
GAACAACCAA TTAAGGCCGT TGACCTGGAG CGCGCTGCTC TGGACCTGAT TCAATTGAAG 
TTCCATGAGA AACACTGTTT CAAGCACTTA AGTCCCGACC ATCAAGGGAA GATCCAACAG 
CTAGAAGAGC AATTGCATCA GCATCTGCGA CGCTTCTTCA ATGACGCCCT TAGCCAGGCA 
CGCAACTCGG CACCGGAATC CTTAGAGCGC TGCTTGCGGA TCTACATAAC TCTAAATGCC 
TGTGATCAGG CAGAGTGCGC CTTCCGCGAG GATGTGGTGG CACCGTATAT GACGGGCGTC 
ATTGGCGAAC AACAGTTGCA AAACTCGCCG CAGGGATTAG CTGGCATCTA CAGCAAGATC 
CTCAACTTTA TATCGCTGCA TATGACCGAT TTGCTGCGCC TTACGCTTTA CTCTGATAAG 
TTTCCGGGCT TTAACTTCGT GGTTAATAGT TACTGGTCTG ATGTGGAGAC GCGTCTCGAA 
CTGCACATGA ATTCCATATT TGCGCCTGGC AATTCGGAGG TGTTCTATGT AAAATACAAG 
TGCACTCGCG ATTTCCTGGG CAAAATAGAG GAGCTATTGA CCTGCTCCGG AGAGCAGGCC 
GTAACGTTCT ATCGCCAGCA CAAGCAAACA AAAAGTTTTG AGGCTCGCTG GAATCTTCCG 
GTTTACTTCC AAATATGCTT TCAAGAAATT GCTGGTAAAT TTGAAGCCCA GTTGGAGCCG 
GTGCTCCAGG AGGATAGTTT AAAAGATAAT CTCACCGATA GTGACTACAA AATATCCGCA 
TTTAATGCCG CGAAGGAGGC TATGACACGG TGCTGGGCCG AGGGAGTTTA CCTACCCGAA 
GTATTTCCGA AATTTTACAA ACTTAATGTG CAGGTGGTAC TGCGTCTTTC GCGCTGGATC 
ACGGATGCAA TTACTCAATC GAAAGGCAGC AACTTTTCTA AGCCCTACAC TCGAAACCAG 
TTGCTTATTG CCCTCCATGC TGACATTCGC AAACTTGACG CGCATCTGCC AGAGCTTCAG 
CAATTGATTA TTAAATCAGT GCCCGTTGAA CAGTGTACGA AGATCTTTAG CGACGTTTTG 
GCCAAATCGA TGTCCTGCCT AGCCGACACG CTAGGTGCGC ATTTGACCAA CATACAAAAG 
ACCTTAGTGG AGTTGCTGAT CGGAGAATGC GAGACGGAAA ATGTGCGACA GGTAAACGAC 
TTGCCGCGGC TGTATCGCAA GACGAATCGA GAGGTTCCCA CACGATGTTC GAGCTATGTG 
GAGCAAATGC TGCGACCGCT GAAGGCATTT GCCCAGCAGA ACGAGTCCCA GCTTGGCACC 
CTGGTGGTGG AACAAATCTT GGCGGAAGTT GCTAGTCACA TAACCAAGGC GTACTTCAAT 
GTGGTGAGCG ATGTGCTCAC ATCCGTACAG AAAACCGAGG AGTCATTGCG ACGCTTGCGA 
AATGTAAAAA GTGGCGGAGC CGCGACTGTT TCGACTGGAA GCTCGGCTGT AATGTCTGAC 
GATGATAAGA TTCGCGTCCA ACTGCGAGTG GATGTCACAT CCTGGAGGCA GGAGCTGTGC 
AAACTAAACT TTCAGGCCAC CCAGATCGAT AAGCTAGTCG AGCTGACAAA CATGGTGGAG 
GACAGTATCA AGCTAAAGGA TAACAGCGCT TAG

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PubMed

Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data.
G3 (Bethesda, Md.)5(8)1721-36(2015 Jun)
Matthews BB,Dos Santos G,Crosby MA,Emmert DB,St Pierre SE,Gramates LS,Zhou P,Schroeder AJ,Falls K,Strelets V,Russo SM,Gelbart WM,

Gene Model Annotations for Drosophila melanogaster: The Rule-Benders.
G3 (Bethesda, Md.)5(8)1737-49(2015 Jun)
Crosby MA,Gramates LS,Dos Santos G,Matthews BB,St Pierre SE,Zhou P,Schroeder AJ,Falls K,Emmert DB,Russo SM,Gelbart WM,

Sequence finishing and mapping of Drosophila melanogaster heterochromatin.
Science (New York, N.Y.)316(5831)1625-8(2007 Jun)
Hoskins RA,Carlson JW,Kennedy C,Acevedo D,Evans-Holm M,Frise E,Wan KH,Park S,Mendez-Lago M,Rossi F,Villasante A,Dimitri P,Karpen GH,Celniker SE

The Release 5.1 annotation of Drosophila melanogaster heterochromatin.
Science (New York, N.Y.)316(5831)1586-91(2007 Jun)
Smith CD,Shu S,Mungall CJ,Karpen GH

Combined evidence annotation of transposable elements in genome sequences.
PLoS computational biology1(2)166-75(2005 Jul)
Quesneville H,Bergman CM,Andrieu O,Autard D,Nouaud D,Ashburner M,Anxolabehere D

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ldlCp cDNA ORF clone, Drosophila melanogaster(fruit fly)

Gene

Clones

gRNAs

Related articles in PubMed

Target ORF information:

Target ORF information:

ORF Insert Sequence:

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