valopa cDNA ORF clone, Danio rerio(zebrafish)

Gene
Clones
gRNAs

Summary

Gene Symbol	valopa
Entrez Gene ID	58109
Full Name	vertebrate ancient long opsin a
Synonyms	(VA)-opsin,VA-opsin,VAL-opsin,va1,valop
General protein information	Preferred Names vertebrate ancient long opsin a Names vertebrate ancient long opsin a (VAL)-opsin vertebrate ancient opsin-1
Gene Type	protein-coding
Organism	Danio rerio(zebrafish)

mRNA and Protein(s)

mRNA	Protein	Name
NM_131586.2	NP_571661.1	vertebrate ancient long opsin a

Pathways from BioSystems

Homologies

Gallus gallus (chicken)	TCTN3	NP_001098788.1
Danio rerio (zebrafish)	valopa	NP_571661.1
Xenopus tropicalis (tropical clawed frog)	LOC100489056	XP_002936846.1
Danio rerio (zebrafish)	valopb	NP_001103750.1

Gene Ontology
Bibliography

Related articles in PubMed

Search strategy is regulated by somatostatin signaling and deep brain photoreceptors in zebrafish.
Horstick EJ, Bayleyen Y, Sinclair JL, Burgess HA
BMC biology15(1)4(2017 Jan)

The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons.
Braasch I, Gehrke AR, Smith JJ, Kawasaki K, Manousaki T, Pasquier J, Amores A, Desvignes T, Batzel P, Catchen J, Berlin AM, Campbell MS, Barrell D, Martin KJ, Mulley JF, Ravi V, Lee AP, Nakamura T, Chalopin D, Fan S, Wcisel D, Ca?estro C, Sydes J, Beaudry FE, Sun Y, Hertel J, Beam MJ, Fasold M, Ishiyama M, Johnson J, Kehr S, Lara M, Letaw JH, Litman GW, Litman RT, Mikami M, Ota T, Saha NR, Williams L, Stadler PF, Wang H, Taylor JS, Fontenot Q, Ferrara A, Searle SM, Aken B, Yandell M, Schneider I, Yoder JA, Volff JN, Meyer A, Amemiya CT, Venkatesh B, Holland PW, Guiguen Y, Bobe J, Shubin NH, Di Palma F, Alf?ldi J, Lindblad-Toh K, Postlethwait JH
Nature genetics48(4)427-37(2016 Apr)

Deep Brain Photoreceptor (val-opsin) Gene Knockout Using CRISPR/Cas Affects Chorion Formation and Embryonic Hatching in the Zebrafish.
Hang CY, Moriya S, Ogawa S, Parhar IS
PloS one11(10)e0165535(2016)

An extended family of novel vertebrate photopigments is widely expressed and displays a diversity of function.
Davies WI, Tamai TK, Zheng L, Fu JK, Rihel J, Foster RG, Whitmore D, Hankins MW
Genome research25(11)1666-79(2015 Nov)

Diversification of non-visual photopigment parapinopsin in spectral sensitivity for diverse pineal functions.
Koyanagi M, Wada S, Kawano-Yamashita E, Hara Y, Kuraku S, Kosaka S, Kawakami K, Tamotsu S, Tsukamoto H, Shichida Y, Terakita A
BMC biology1373(2015 Sep)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

valop gene knockout affects chorion formation and embryonic hatching in the zebrafish
Title: Deep Brain Photoreceptor (val-opsin) Gene Knockout Using CRISPR/Cas Affects Chorion Formation and Embryonic Hatching in the Zebrafish.

The results of this study showed diurnal expression changes of vertebrate ancient long (VAL) opsin genes (valopa and valopb), depending on brain area, time of day and light condition, in the adult male zebrafish.
Title: Brain area-specific diurnal and photic regulation of val-opsinA and val-opsinB genes in the zebrafish.

not only suppresses spontaneous activity but also alters the maturation of time-locked correlated network patterns
Title: A spinal opsin controls early neural activity and drives a behavioral light response.

This study demonistrated that presence of valop cell populations in different brain regions with coexpression of neurotransmitters and neuropeptides and the colocalization of valop isoforms in the thalamic cell population.
Title: Localization and characterization of val-opsin isoform-expressing cells in the brain of adult zebrafish.

VAL-opsinA and VAL-opsinB are involved in different physiological events suggested by their differential expression pattern.
Title: Differential expression of duplicated VAL-opsin genes in the developing zebrafish.

The following valopa gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the valopa cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)	Select
ODa31389	NM_131586.2 Latest version!	Danio rerio vertebrate ancient long opsin a (valopa), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	7-9	$258.30 $369.00

ORF Online Only Promotion

Next-day Shipping ORF Clones ( in default vector with tag)
1 Clone	30% OFF
2-4 Clone	40% OFF
5 or more Clone	50% OFF
All Other ORF Clones
30% OFF

*Business Day

** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

valopa ( NM_131586.2 ) cDNA ORF clone, Danio rerio(zebrafish) -> NP_571661.1 Danio rerio vertebrate ancient long opsin a (valopa), mRNA.

Price & Availability↑

CloneID	ODa31389
Clone ID Related Accession (Same CDS sequence)	NM_131586.2
Accession Version	NM_131586.2 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 1134bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2017-06-25
Organism	Danio rerio(zebrafish)
Product	vertebrate ancient long opsin a
Comment	Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC128815.1. On Dec 10, 2006 this sequence version replaced NM_131586.1. Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications. ##Evidence-Data-START## Transcript exon combination :: BC128815.1, AB035276.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA2168446, SAMEA2168448 [ECO:0000348] ##Evidence-Data-END##

ATGGAGGCGT CCTCCGCGGC CGTGAACGCG GTTTCTCCCG CCGAAGACCC GTTCTCCGCG 
CCGCTGTCTT CCATCGCGCC CTGGAACTAC AGTGTTCTGG CGGCGCTGAT GTTCGTGGTG 
ACCGCGCTGT CTCTGTCCGA GAACTTCACC GTAATGCTGG TCACCTTCAG GTTCCAGCAG 
CTCCGGCAGC CGCTCAACTA CATCATCGTC AACCTGTCTC TGGCCGACTT CCTGGTGTCT 
CTGACCGGCG GCAGCATCAG CTTCCTCACC AACTATCACG GATATTTCTT CCTGGGGAAA 
TGGGCTTGCG TGCTCGAGGG CTTCGCCGTC ACCTTTTTCG GTATTGTGGC TCTGTGGTCT 
CTCGCCGTTC TGGCGTTCGA GCGGTTTTTC GTGATCTGCC GACCACTAGG GAACATTCGT 
CTGCGGGGCA AACATGCAGC TCTGGGTCTG GTGTTTGTCT GGAGTTTCTC CTTCATCTGG 
ACTGTTCCTC CTGTTCTAGG CTGGAGCAGC TATACTGTCA GCAGGATCGG TACCACCTGT 
GAACCCAACT GGTATTCAGG AAACTTCCAC GACCACACCT TCATCATCAC GTTATTCAGT 
ACCTGCTTCA TCTTCCCTCT GGGAGTGATC ATCGTCTGCT ACTGCAAACT CATCCGCAAA 
CTCAGAAAGG TCTCCAACAC CCATGGCAGG CTGGGTAACG CCAGGAAACC GGAGCGTCAG 
GTGACCCGTA TGGTGGTGGT GATGATCGTG GCATTTATGG TGGCCTGGAC GCCGTACGCC 
GCTTTCTCCA TCATCATCAC TGCACATCCC AGCATGCACG TGGACCCACG TCTGGCAGCC 
ATTCCTGCAT TTGTGGCCAA AACAGCGGCA GTGTACAACC CCATCATCTA TGTGTTCATG 
AACAAACAGT TCAGAAAGTG TCTGGTTCAG CTCTTGAGTT GCAGTAAAGT GACTGTGGTG 
GAAGGAAATA ATAATCAGAC GACCGAACGT GCCGGCATGA CCAGCGGGAG CAACACTGGA 
GAGATGTCTG CCATCGCTGC TCGCGTCTCC GTCCCGAAAA CAGAGGAAAA TCCTGGAGAC 
CGCAGCACTT TCAGCCACAT CCCCATACCT GAGAACAAAG TGTGTCCCAT GTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_571661.1
CDS	234..1367
Translation	MEASSAAVNAVSPAEDPFSAPLSSIAPWNYSVLAALMFVVTALSLSENFTVMLVTFRFQQLRQPLNYIIVNLSLADFLVSLTGGSISFLTNYHGYFFLGKWACVLEGFAVTFFGIVALWSLAVLAFERFFVICRPLGNIRLRGKHAALGLVFVWSFSFIWTVPPVLGWSSYTVSRIGTTCEPNWYSGNFHDHTFIITLFSTCFIFPLGVIIVCYCKLIRKLRKVSNTHGRLGNARKPERQVTRMVVVMIVAFMVAWTPYAAFSIIITAHPSMHVDPRLAAIPAFVAKTAAVYNPIIYVFMNKQFRKCLVQLLSCSKVTVVEGNNNQTTERAGMTSGSNTGEMSAIAARVSVPKTEENPGDRSTFSHIPIPENKVCPM

Target ORF information:

RefSeq Version	NM_131586.2
Organism	Danio rerio(zebrafish)
Definition	Danio rerio vertebrate ancient long opsin a (valopa), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_131586.2

ORF Insert Sequence:

ATGGAGGCGT CCTCCGCGGC CGTGAACGCG GTTTCTCCCG CCGAAGACCC GTTCTCCGCG 
CCGCTGTCTT CCATCGCGCC CTGGAACTAC AGTGTTCTGG CGGCGCTGAT GTTCGTGGTG 
ACCGCGCTGT CTCTGTCCGA GAACTTCACC GTAATGCTGG TCACCTTCAG GTTCCAGCAG 
CTCCGGCAGC CGCTCAACTA CATCATCGTC AACCTGTCTC TGGCCGACTT CCTGGTGTCT 
CTGACCGGCG GCAGCATCAG CTTCCTCACC AACTATCACG GATATTTCTT CCTGGGGAAA 
TGGGCTTGCG TGCTCGAGGG CTTCGCCGTC ACCTTTTTCG GTATTGTGGC TCTGTGGTCT 
CTCGCCGTTC TGGCGTTCGA GCGGTTTTTC GTGATCTGCC GACCACTAGG GAACATTCGT 
CTGCGGGGCA AACATGCAGC TCTGGGTCTG GTGTTTGTCT GGAGTTTCTC CTTCATCTGG 
ACTGTTCCTC CTGTTCTAGG CTGGAGCAGC TATACTGTCA GCAGGATCGG TACCACCTGT 
GAACCCAACT GGTATTCAGG AAACTTCCAC GACCACACCT TCATCATCAC GTTATTCAGT 
ACCTGCTTCA TCTTCCCTCT GGGAGTGATC ATCGTCTGCT ACTGCAAACT CATCCGCAAA 
CTCAGAAAGG TCTCCAACAC CCATGGCAGG CTGGGTAACG CCAGGAAACC GGAGCGTCAG 
GTGACCCGTA TGGTGGTGGT GATGATCGTG GCATTTATGG TGGCCTGGAC GCCGTACGCC 
GCTTTCTCCA TCATCATCAC TGCACATCCC AGCATGCACG TGGACCCACG TCTGGCAGCC 
ATTCCTGCAT TTGTGGCCAA AACAGCGGCA GTGTACAACC CCATCATCTA TGTGTTCATG 
AACAAACAGT TCAGAAAGTG TCTGGTTCAG CTCTTGAGTT GCAGTAAAGT GACTGTGGTG 
GAAGGAAATA ATAATCAGAC GACCGAACGT GCCGGCATGA CCAGCGGGAG CAACACTGGA 
GAGATGTCTG CCATCGCTGC TCGCGTCTCC GTCCCGAAAA CAGAGGAAAA TCCTGGAGAC 
CGCAGCACTT TCAGCCACAT CCCCATACCT GAGAACAAAG TGTGTCCCAT GTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PubMed

Search strategy is regulated by somatostatin signaling and deep brain photoreceptors in zebrafish.
BMC biology15(1)4(2017 Jan)
Horstick EJ,Bayleyen Y,Sinclair JL,Burgess HA

The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons.
Nature genetics48(4)427-37(2016 Apr)
Braasch I,Gehrke AR,Smith JJ,Kawasaki K,Manousaki T,Pasquier J,Amores A,Desvignes T,Batzel P,Catchen J,Berlin AM,Campbell MS,Barrell D,Martin KJ,Mulley JF,Ravi V,Lee AP,Nakamura T,Chalopin D,Fan S,Wcisel D,Ca?estro C,Sydes J,Beaudry FE,Sun Y,Hertel J,Beam MJ,Fasold M,Ishiyama M,Johnson J,Kehr S,Lara M,Letaw JH,Litman GW,Litman RT,Mikami M,Ota T,Saha NR,Williams L,Stadler PF,Wang H,Taylor JS,Fontenot Q,Ferrara A,Searle SM,Aken B,Yandell M,Schneider I,Yoder JA,Volff JN,Meyer A,Amemiya CT,Venkatesh B,Holland PW,Guiguen Y,Bobe J,Shubin NH,Di Palma F,Alf?ldi J,Lindblad-Toh K,Postlethwait JH

Deep Brain Photoreceptor (val-opsin) Gene Knockout Using CRISPR/Cas Affects Chorion Formation and Embryonic Hatching in the Zebrafish.
PloS one11(10)e0165535(2016)
Hang CY,Moriya S,Ogawa S,Parhar IS

An extended family of novel vertebrate photopigments is widely expressed and displays a diversity of function.
Genome research25(11)1666-79(2015 Nov)
Davies WI,Tamai TK,Zheng L,Fu JK,Rihel J,Foster RG,Whitmore D,Hankins MW

Diversification of non-visual photopigment parapinopsin in spectral sensitivity for diverse pineal functions.
BMC biology1373(2015 Sep)
Koyanagi M,Wada S,Kawano-Yamashita E,Hara Y,Kuraku S,Kosaka S,Kawakami K,Tamotsu S,Tsukamoto H,Shichida Y,Terakita A

- Most Popular Services
  - 人工遺伝子合成& DNA合成-納期保証
- Services & Products

見積依頼

Eメール

japanmarket@genscript.com

電話

03-6811-6572

FAX

03-6811-6573
050-3174-7589(受注専用)

オンラインフォーム

オンライン注文

valopa cDNA ORF clone, Danio rerio(zebrafish)

Gene

Clones

gRNAs

Related articles in PubMed

Target ORF information:

Target ORF information:

ORF Insert Sequence:

Most Popular Services

Services & Products

見積依頼

Eメール

電話

FAX

オンラインフォーム

サポート

会社情報

サポート

会社情報