Gene Symbol | LOC100002392 |
Entrez Gene ID | 100002392 |
Full Name | chemokine CCL-C17a |
Gene Type | protein-coding |
Organism | Danio rerio(zebrafish) |
ORF » Species Summary » Danio rerio » LOC100002392 cDNA ORF clone
Gene Symbol | LOC100002392 |
Entrez Gene ID | 100002392 |
Full Name | chemokine CCL-C17a |
Gene Type | protein-coding |
Organism | Danio rerio(zebrafish) |
mRNA | Protein | Name |
---|---|---|
XM_005174639.3 | XP_005174696.1 | uncharacterized protein LOC100002392 |
XM_005174639.4 | XP_005174696.1 | uncharacterized protein LOC100002392 |
NM_001115067.1 | NP_001108539.1 | uncharacterized protein LOC100002392 precursor |
NM_001361396.1 | NP_001348325.1 | uncharacterized protein LOC100002392 precursor |
Danio rerio (zebrafish) | LOC100141478 | XP_005162866.1 |
Danio rerio (zebrafish) | si:dkey-25o1.6 | NP_001108526.2 |
Danio rerio (zebrafish) | LOC100002392 | XP_005174696.1 |
Extensive expansion and diversification of the chemokine gene family in zebrafish: identification of a novel chemokine subfamily CX.
Nomiyama H, Hieshima K, Osada N, Kato-Unoki Y, Otsuka-Ono K, Takegawa S, Izawa T, Yoshizawa A, Kikuchi Y, Tanase S, Miura R, Kusuda J, Nakao M, Yoshie O
BMC genomics9222(2008 May)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following LOC100002392 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the LOC100002392 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | ODa04957 | |
Clone ID Related Accession (Same CDS sequence) | NM_001115067.1 | |
Accession Version | NM_001115067.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 336bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2014-09-10 | |
Organism | Danio rerio(zebrafish) | |
Product | uncharacterized protein LOC100002392 precursor | |
Comment | Comment: PREDICTED REFSEQ: This record has not been reviewed and the function is unknown. The reference sequence was derived from AB331764.1. On Mar 2, 2008 this sequence version replaced XM_001338420.1. ##Evidence-Data-START## Transcript exon combination :: AB331764.1 [ECO:0000332] ##Evidence-Data-END## |
1 | ATGATGAGTA TTTGTTGGAA ATTAGCTCTG ATGATGATGG TGGTTCTTGT TACATCACAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001108539.1 |
CDS | 1..336 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001115067.1 |
1 | ATGATGAGTA TTTGTTGGAA ATTAGCTCTG ATGATGATGG TGGTTCTTGT TACATCACAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ODa30286 | |
Clone ID Related Accession (Same CDS sequence) | XM_005174639.3 , XM_005174639.4 , NM_001361396.1 | |
Accession Version | NM_001361396.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 426bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2018-03-27 | |
Organism | Danio rerio(zebrafish) | |
Product | uncharacterized protein LOC100002392 precursor | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from CABZ01001434.1. On Mar 28, 2018 this sequence version replaced XM_005174639.4. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments. ##Evidence-Data-START## Transcript exon combination :: CN021049.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA2168446, SAMEA2168447 [ECO:0000348] ##Evidence-Data-END## |
1 | ATGGAAACAC AAAGAATCCT CGTGAGGAGT TTGACAATTG TTGTTATTGC ATCTGTTATC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001348325.1 |
CDS | 63..488 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001361396.1 |
1 | ATGGAAACAC AAAGAATCCT CGTGAGGAGT TTGACAATTG TTGTTATTGC ATCTGTTATC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ODa30286 | |
Clone ID Related Accession (Same CDS sequence) | XM_005174639.3 , XM_005174639.4 , NM_001361396.1 | |
Accession Version | XM_005174639.3 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 426bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-06-23 | |
Organism | Danio rerio(Zebrafish) | |
Product | uncharacterized protein LOC100002392 | |
Comment | MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003337066.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 24, 2016 this sequence version replaced XM_005174639.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGAAACAC AAAGAATCCT CGTGAGGAGT TTGACAATTG TTGTTATTGC ATCTGTTATC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_005174696.1 |
CDS | 57..482 |
Translation |
Target ORF information:
Target ORF information:
|
XM_005174639.3 |
1 | ATGGAAACAC AAAGAATCCT CGTGAGGAGT TTGACAATTG TTGTTATTGC ATCTGTTATC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ODa30286 | |
Clone ID Related Accession (Same CDS sequence) | XM_005174639.3 , XM_005174639.4 , NM_001361396.1 | |
Accession Version | XM_005174639.4 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 426bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2017-06-14 | |
Organism | Danio rerio(zebrafish) | |
Product | uncharacterized protein LOC100002392 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003337066.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 15, 2017 this sequence version replaced XM_005174639.3. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGAAACAC AAAGAATCCT CGTGAGGAGT TTGACAATTG TTGTTATTGC ATCTGTTATC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_005174696.1 |
CDS | 64..489 |
Translation |
Target ORF information:
Target ORF information:
|
XM_005174639.4 |
1 | ATGGAAACAC AAAGAATCCT CGTGAGGAGT TTGACAATTG TTGTTATTGC ATCTGTTATC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
Extensive expansion and diversification of the chemokine gene family in zebrafish: identification of a novel chemokine subfamily CX. |