Gene Symbol | LOC100141478 |
Entrez Gene ID | 100141478 |
Full Name | chemokine CCL-CUa |
Gene Type | protein-coding |
Organism | Danio rerio(Zebrafish) |
ORF » Species Summary » Danio rerio » LOC100141478 cDNA ORF clone
Gene Symbol | LOC100141478 |
Entrez Gene ID | 100141478 |
Full Name | chemokine CCL-CUa |
Gene Type | protein-coding |
Organism | Danio rerio(Zebrafish) |
mRNA | Protein | Name |
---|---|---|
XM_021474558.1 | XP_021330233.1 | LOW QUALITY PROTEIN: chemokine CCL-CUa |
XM_021473802.1 | XP_021329477.1 | LOW QUALITY PROTEIN: chemokine CCL-CUa |
XM_021470351.1 | XP_021326026.1 | LOW QUALITY PROTEIN: chemokine CCL-CUa |
NM_001115100.1 | NP_001108572.1 | chemokine CCL-CUa precursor |
XM_017354030.1 | XP_017209519.1 | chemokine CCL-CUa |
Danio rerio (zebrafish) | LOC100141478 | XP_005162866.1 |
Danio rerio (zebrafish) | si:dkey-25o1.6 | NP_001108526.2 |
Danio rerio (zebrafish) | LOC100002392 | XP_005174696.1 |
Extensive expansion and diversification of the chemokine gene family in zebrafish: identification of a novel chemokine subfamily CX.
Nomiyama H, Hieshima K, Osada N, Kato-Unoki Y, Otsuka-Ono K, Takegawa S, Izawa T, Yoshizawa A, Kikuchi Y, Tanase S, Miura R, Kusuda J, Nakao M, Yoshie O
BMC genomics9222(2008 May)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following LOC100141478 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the LOC100141478 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | ODa35684 | |
Clone ID Related Accession (Same CDS sequence) | NM_001115100.1 | |
Accession Version | NM_001115100.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 300bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2017-07-02 | |
Organism | Danio rerio(zebrafish) | |
Product | chemokine CCL-CUa precursor | |
Comment | Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AB331774.1. On Aug 31, 2013 this sequence version replaced XM_005162809.1. ##Evidence-Data-START## Transcript exon combination :: AB331774.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA2168446, SAMEA2168447 [ECO:0000348] ##Evidence-Data-END## |
1 | ATGATGAGTA TTTGTTGGAA GTTAGCTCTG ATGATGATGA CAGTTCTTGT TACATCACAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001108572.1 |
CDS | 7..306 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001115100.1 |
1 | ATGATGAGTA TTTGTTGGAA GTTAGCTCTG ATGATGATGA CAGTTCTTGT TACATCACAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ODa141231 | |
Clone ID Related Accession (Same CDS sequence) | XM_021474558.1 , XM_021473802.1 , XM_021470351.1 | |
Accession Version | XM_021474558.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 291bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2017-06-14 | |
Organism | Danio rerio(zebrafish) | |
Product | LOW QUALITY PROTEIN: chemokine CCL-CUa | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_018395366.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## frameshifts :: corrected 2 indels ##RefSeq-Attributes-END## |
1 | ATGATGAATA TTTGTNTAAA GTTAGCTCTG ATGATGATGA CAGTTCTTGT TACATCACAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_021330233.1 |
CDS | 145..435 |
Translation |
Target ORF information:
Target ORF information:
|
XM_021474558.1 |
1 | ATGATGAATA TTTGTNTAAA GTTAGCTCTG ATGATGATGA CAGTTCTTGT TACATCACAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ODa141231 | |
Clone ID Related Accession (Same CDS sequence) | XM_021474558.1 , XM_021473802.1 , XM_021470351.1 | |
Accession Version | XM_021473802.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 291bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2017-06-14 | |
Organism | Danio rerio(zebrafish) | |
Product | LOW QUALITY PROTEIN: chemokine CCL-CUa | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_018395178.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## frameshifts :: corrected 2 indels ##RefSeq-Attributes-END## |
1 | ATGATGAATA TTTGTNTAAA GTTAGCTCTG ATGATGATGA CAGTTCTTGT TACATCACAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_021329477.1 |
CDS | 145..435 |
Translation |
Target ORF information:
Target ORF information:
|
XM_021473802.1 |
1 | ATGATGAATA TTTGTNTAAA GTTAGCTCTG ATGATGATGA CAGTTCTTGT TACATCACAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ODa141231 | |
Clone ID Related Accession (Same CDS sequence) | XM_021474558.1 , XM_021473802.1 , XM_021470351.1 | |
Accession Version | XM_021470351.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 291bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2017-06-14 | |
Organism | Danio rerio(zebrafish) | |
Product | LOW QUALITY PROTEIN: chemokine CCL-CUa | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007135.7) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## frameshifts :: corrected 2 indels ##RefSeq-Attributes-END## |
1 | ATGATGAATA TTTGTNTAAA GTTAGCTCTG ATGATGATGA CAGTTCTTGT TACATCACAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_021326026.1 |
CDS | 145..435 |
Translation |
Target ORF information:
Target ORF information:
|
XM_021470351.1 |
1 | ATGATGAATA TTTGTNTAAA GTTAGCTCTG ATGATGATGA CAGTTCTTGT TACATCACAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ODa57775 | |
Clone ID Related Accession (Same CDS sequence) | XM_017354030.1 | |
Accession Version | XM_017354030.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 615bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-06-23 | |
Organism | Danio rerio(Zebrafish) | |
Product | chemokine CCL-CUa | |
Comment | MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007135.6) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGACAGATG CTGTGGTAAA CAGGACTCTT TTTATATCTT TTGTTTACTG CAGAGCTCAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_017209519.1 |
CDS | 107..721 |
Translation |
Target ORF information:
Target ORF information:
|
XM_017354030.1 |
1 | ATGACAGATG CTGTGGTAAA CAGGACTCTT TTTATATCTT TTGTTTACTG CAGAGCTCAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
Extensive expansion and diversification of the chemokine gene family in zebrafish: identification of a novel chemokine subfamily CX. |