OPN1SW cDNA ORF clone, Canis lupus familiaris(Dog)

Gene
Clones
gRNAs

Summary

Gene Symbol	OPN1SW
Entrez Gene ID	482267
Full Name	opsin 1, short wave sensitive
General protein information	Preferred Names opsin 1, short wave sensitive Names short-wave-sensitive opsin 1 opsin 1 (cone pigments), short-wave-sensitive (color blindness, tritan)
Gene Type	protein-coding
Organism	Canis lupus familiaris(Dog)

mRNA and Protein(s)

mRNA	Protein	Name
XM_539386.5	XP_539386.2	short-wave-sensitive opsin 1
XM_539386.4	XP_539386.2	short-wave-sensitive opsin 1

Pathways from BioSystems

Homologies

Bos taurus (cattle)	OPN1SW	NP_776992.1
Mus musculus (house mouse)	Opn1sw	NP_031564.1
Homo sapiens (human)	OPN1SW	NP_001699.1
	OPN1SW	XP_001091869.1
Canis lupus familiaris (dog)	OPN1SW	XP_539386.2
Xenopus tropicalis (tropical clawed frog)	opn1sw	NP_001119548.1
Pan troglodytes (chimpanzee)	OPN1SW	NP_001009127.1
Rattus norvegicus (Norway rat)	Opn1sw	NP_112277.1
Danio rerio (zebrafish)	opn1sw1	NP_571394.1

Gene Ontology

The following OPN1SW gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the OPN1SW cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)
OCe16584	XM_539386.5 Latest version!	Canis lupus familiaris opsin 1, short wave sensitive (OPN1SW), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	7-9	$258.30 $369.00
View Old Accession Versions >>
OCe16584	XM_539386.4	Canis lupus familiaris opsin 1 (cone pigments), short-wave-sensitive (OPN1SW), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	7-9	$258.30 $369.00
Hide Old Accession Versions >>

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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

OPN1SW ( XM_539386.5 ) cDNA ORF clone, Canis lupus familiaris(Dog) -> XP_539386.2 Canis lupus familiaris opsin 1, short wave sensitive (OPN1SW), mRNA.

Price & Availability↑

CloneID	OCe16584
Clone ID Related Accession (Same CDS sequence)	XM_539386.5 , XM_539386.4
Accession Version	XM_539386.5 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 1047bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2017-09-04
Organism	Canis lupus familiaris(dog)
Product	short-wave-sensitive opsin 1
Comment	Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_006596.3) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Sep 5, 2017 this sequence version replaced XM_539386.4. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Canis lupus familiaris Annotation Release 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END##

ATGAGTAAGA TGTCAGGGGA AGAGGAGTTT TATCTGTTCA AGAACATCTC CTTGGTGGGG 
CCATGGGACG GGCCTCAGTA CCACATCGCC CCTGTCTGGG CCTTCCACCT CCAGGCAGTC 
TTCATGGGCT TTGTCTTCTT TGCAGGGACA CCACTCAATG GCACGGTGCT GGTGGCTACC 
CTGCGCTATA AAAAGTTGCG ACAGCCACTC AACTATATTC TGGTCAATGT GTCCCTGGGG 
GGCTTCCTCT ACTGCATCTC TGTCTCCACC GTCTTCATCG CCAGCTGTCA GGGATACTTC 
GTCTTTGGCC GCCATGTTTG TGCTTTGGAG GCCTTCCTGG GCTCTACAGC AGGTCTGGTG 
ACAGGCTGGT CACTGGCCTT CCTGGCCTTT GAGCGCTACA TTGTCATCTG TAAGCCCTTC 
GGCAACTTCC GCTTCAGCTC CAAGCACGCA CTGATGGTGG TCCTGGCTAC CTGGACCATT 
GGTATTGGCG TCTCCATCCC ACCTTTCTTT GGCTGGAGCC GGTTCATCCC GGAGGGCCTG 
CAGTGTTCCT GTGGCCCCGA CTGGTACACC GTGGGCACCA AATACCGCAG CGAGTATTAT 
ACCTGGTTCC TCTTCATCTT CTGCTTCATT GTACCTCTCT CCCTTATCTG CTTCTCCTAC 
TTGCAGCTGC TGAGAGCCCT CAGAGCTGTT GCAGCCCAGC AACAGGAGTC AGCTTCAACC 
CAGAAGGCCG AGAGGGAGGT GAGCCGTATG GTGGTGGTGA TGGTGGGATC GTTTTGTCTC 
TGTTACACAC CCTATGCTGC GATGGCCATG TATATGGTCA ACAACCGGAA TCACGGACTG 
GACTTACGGC TTGTCACCAT TCCTGCCTTC TTCTCCAAGA GTGCTTGTGT CTATAACCCC 
ATCATCTACT GCTTCATGAA TAAGCAGTTC CGAGCCTGCA TCATGGAGAT GGTGTGTGGG 
AAGTCCATGA CAGAGGATTC TGAAATGTCC AGCTCCCAGA AAACAGAAGT CTCCACTGTC 
TCTCCCAGTC AAGTTGGCCC CAACTAA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	XP_539386.2
CDS	192..1238
Translation	MSKMSGEEEFYLFKNISLVGPWDGPQYHIAPVWAFHLQAVFMGFVFFAGTPLNGTVLVATLRYKKLRQPLNYILVNVSLGGFLYCISVSTVFIASCQGYFVFGRHVCALEAFLGSTAGLVTGWSLAFLAFERYIVICKPFGNFRFSSKHALMVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRSEYYTWFLFIFCFIVPLSLICFSYLQLLRALRAVAAQQQESASTQKAEREVSRMVVVMVGSFCLCYTPYAAMAMYMVNNRNHGLDLRLVTIPAFFSKSACVYNPIIYCFMNKQFRACIMEMVCGKSMTEDSEMSSSQKTEVSTVSPSQVGPN

Target ORF information:

RefSeq Version	XM_539386.5
Organism	Canis lupus familiaris(dog)
Definition	Canis lupus familiaris opsin 1, short wave sensitive (OPN1SW), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

XM_539386.5

ORF Insert Sequence:

ATGAGTAAGA TGTCAGGGGA AGAGGAGTTT TATCTGTTCA AGAACATCTC CTTGGTGGGG 
CCATGGGACG GGCCTCAGTA CCACATCGCC CCTGTCTGGG CCTTCCACCT CCAGGCAGTC 
TTCATGGGCT TTGTCTTCTT TGCAGGGACA CCACTCAATG GCACGGTGCT GGTGGCTACC 
CTGCGCTATA AAAAGTTGCG ACAGCCACTC AACTATATTC TGGTCAATGT GTCCCTGGGG 
GGCTTCCTCT ACTGCATCTC TGTCTCCACC GTCTTCATCG CCAGCTGTCA GGGATACTTC 
GTCTTTGGCC GCCATGTTTG TGCTTTGGAG GCCTTCCTGG GCTCTACAGC AGGTCTGGTG 
ACAGGCTGGT CACTGGCCTT CCTGGCCTTT GAGCGCTACA TTGTCATCTG TAAGCCCTTC 
GGCAACTTCC GCTTCAGCTC CAAGCACGCA CTGATGGTGG TCCTGGCTAC CTGGACCATT 
GGTATTGGCG TCTCCATCCC ACCTTTCTTT GGCTGGAGCC GGTTCATCCC GGAGGGCCTG 
CAGTGTTCCT GTGGCCCCGA CTGGTACACC GTGGGCACCA AATACCGCAG CGAGTATTAT 
ACCTGGTTCC TCTTCATCTT CTGCTTCATT GTACCTCTCT CCCTTATCTG CTTCTCCTAC 
TTGCAGCTGC TGAGAGCCCT CAGAGCTGTT GCAGCCCAGC AACAGGAGTC AGCTTCAACC 
CAGAAGGCCG AGAGGGAGGT GAGCCGTATG GTGGTGGTGA TGGTGGGATC GTTTTGTCTC 
TGTTACACAC CCTATGCTGC GATGGCCATG TATATGGTCA ACAACCGGAA TCACGGACTG 
GACTTACGGC TTGTCACCAT TCCTGCCTTC TTCTCCAAGA GTGCTTGTGT CTATAACCCC 
ATCATCTACT GCTTCATGAA TAAGCAGTTC CGAGCCTGCA TCATGGAGAT GGTGTGTGGG 
AAGTCCATGA CAGAGGATTC TGAAATGTCC AGCTCCCAGA AAACAGAAGT CTCCACTGTC 
TCTCCCAGTC AAGTTGGCCC CAACTAA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

OPN1SW ( XM_539386.4 ) cDNA ORF clone, Canis lupus familiaris(Dog) -> XP_539386.2 Canis lupus familiaris opsin 1 (cone pigments), short-wave-sensitive (OPN1SW), mRNA.

Price & Availability↑

CloneID	OCe16584
Clone ID Related Accession (Same CDS sequence)	XM_539386.5 , XM_539386.4
Accession Version	XM_539386.4	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 1047bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2015-09-16
Organism	Canis lupus familiaris(Dog)
Product	short-wave-sensitive opsin 1
Comment	MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003726084.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Sep 17, 2015 this sequence version replaced XM_539386.3. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Canis lupus familiaris Annotation Release 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END##

ATGAGTAAGA TGTCAGGGGA AGAGGAGTTT TATCTGTTCA AGAACATCTC CTTGGTGGGG 
CCATGGGACG GGCCTCAGTA CCACATCGCC CCTGTCTGGG CCTTCCACCT CCAGGCAGTC 
TTCATGGGCT TTGTCTTCTT TGCAGGGACA CCACTCAATG GCACGGTGCT GGTGGCTACC 
CTGCGCTATA AAAAGTTGCG ACAGCCACTC AACTATATTC TGGTCAATGT GTCCCTGGGG 
GGCTTCCTCT ACTGCATCTC TGTCTCCACC GTCTTCATCG CCAGCTGTCA GGGATACTTC 
GTCTTTGGCC GCCATGTTTG TGCTTTGGAG GCCTTCCTGG GCTCTACAGC AGGTCTGGTG 
ACAGGCTGGT CACTGGCCTT CCTGGCCTTT GAGCGCTACA TTGTCATCTG TAAGCCCTTC 
GGCAACTTCC GCTTCAGCTC CAAGCACGCA CTGATGGTGG TCCTGGCTAC CTGGACCATT 
GGTATTGGCG TCTCCATCCC ACCTTTCTTT GGCTGGAGCC GGTTCATCCC GGAGGGCCTG 
CAGTGTTCCT GTGGCCCCGA CTGGTACACC GTGGGCACCA AATACCGCAG CGAGTATTAT 
ACCTGGTTCC TCTTCATCTT CTGCTTCATT GTACCTCTCT CCCTTATCTG CTTCTCCTAC 
TTGCAGCTGC TGAGAGCCCT CAGAGCTGTT GCAGCCCAGC AACAGGAGTC AGCTTCAACC 
CAGAAGGCCG AGAGGGAGGT GAGCCGTATG GTGGTGGTGA TGGTGGGATC GTTTTGTCTC 
TGTTACACAC CCTATGCTGC GATGGCCATG TATATGGTCA ACAACCGGAA TCACGGACTG 
GACTTACGGC TTGTCACCAT TCCTGCCTTC TTCTCCAAGA GTGCTTGTGT CTATAACCCC 
ATCATCTACT GCTTCATGAA TAAGCAGTTC CGAGCCTGCA TCATGGAGAT GGTGTGTGGG 
AAGTCCATGA CAGAGGATTC TGAAATGTCC AGCTCCCAGA AAACAGAAGT CTCCACTGTC 
TCTCCCAGTC AAGTTGGCCC CAACTAA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	XP_539386.2
CDS	88..1134
Translation	MSKMSGEEEFYLFKNISLVGPWDGPQYHIAPVWAFHLQAVFMGFVFFAGTPLNGTVLVATLRYKKLRQPLNYILVNVSLGGFLYCISVSTVFIASCQGYFVFGRHVCALEAFLGSTAGLVTGWSLAFLAFERYIVICKPFGNFRFSSKHALMVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRSEYYTWFLFIFCFIVPLSLICFSYLQLLRALRAVAAQQQESASTQKAEREVSRMVVVMVGSFCLCYTPYAAMAMYMVNNRNHGLDLRLVTIPAFFSKSACVYNPIIYCFMNKQFRACIMEMVCGKSMTEDSEMSSSQKTEVSTVSPSQVGPN

Target ORF information:

RefSeq Version	XM_539386.4
Organism	Canis lupus familiaris(Dog)
Definition	Canis lupus familiaris opsin 1 (cone pigments), short-wave-sensitive (OPN1SW), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

XM_539386.4

ORF Insert Sequence:

ATGAGTAAGA TGTCAGGGGA AGAGGAGTTT TATCTGTTCA AGAACATCTC CTTGGTGGGG 
CCATGGGACG GGCCTCAGTA CCACATCGCC CCTGTCTGGG CCTTCCACCT CCAGGCAGTC 
TTCATGGGCT TTGTCTTCTT TGCAGGGACA CCACTCAATG GCACGGTGCT GGTGGCTACC 
CTGCGCTATA AAAAGTTGCG ACAGCCACTC AACTATATTC TGGTCAATGT GTCCCTGGGG 
GGCTTCCTCT ACTGCATCTC TGTCTCCACC GTCTTCATCG CCAGCTGTCA GGGATACTTC 
GTCTTTGGCC GCCATGTTTG TGCTTTGGAG GCCTTCCTGG GCTCTACAGC AGGTCTGGTG 
ACAGGCTGGT CACTGGCCTT CCTGGCCTTT GAGCGCTACA TTGTCATCTG TAAGCCCTTC 
GGCAACTTCC GCTTCAGCTC CAAGCACGCA CTGATGGTGG TCCTGGCTAC CTGGACCATT 
GGTATTGGCG TCTCCATCCC ACCTTTCTTT GGCTGGAGCC GGTTCATCCC GGAGGGCCTG 
CAGTGTTCCT GTGGCCCCGA CTGGTACACC GTGGGCACCA AATACCGCAG CGAGTATTAT 
ACCTGGTTCC TCTTCATCTT CTGCTTCATT GTACCTCTCT CCCTTATCTG CTTCTCCTAC 
TTGCAGCTGC TGAGAGCCCT CAGAGCTGTT GCAGCCCAGC AACAGGAGTC AGCTTCAACC 
CAGAAGGCCG AGAGGGAGGT GAGCCGTATG GTGGTGGTGA TGGTGGGATC GTTTTGTCTC 
TGTTACACAC CCTATGCTGC GATGGCCATG TATATGGTCA ACAACCGGAA TCACGGACTG 
GACTTACGGC TTGTCACCAT TCCTGCCTTC TTCTCCAAGA GTGCTTGTGT CTATAACCCC 
ATCATCTACT GCTTCATGAA TAAGCAGTTC CGAGCCTGCA TCATGGAGAT GGTGTGTGGG 
AAGTCCATGA CAGAGGATTC TGAAATGTCC AGCTCCCAGA AAACAGAAGT CTCCACTGTC 
TCTCCCAGTC AAGTTGGCCC CAACTAA