Ybx3 cDNA ORF clone, Rattus norvegicus(Norway rat)

Gene
Clones
gRNAs

Summary

Gene Symbol	Ybx3
Entrez Gene ID	83807
Full Name	Y box binding protein 3
Synonyms	Csda,Dbpa,Yb2
General protein information	Preferred Names Y box binding protein 3 Names Y-box-binding protein 3 DNA-binding protein A RYB-A Y-box-binding protein A cold shock domain protein A cold shock domain-containing protein A muscle Y-box protein YB2
Gene Type	protein-coding
Organism	Rattus norvegicus(Norway rat)
Genome	Chromosome: 4 Map Location: 4q42
Summary	acts as a transcriptional repressor of the nicotinic acetylcholine receptor delta-subunit gene [RGD, Feb 2006].

mRNA and Protein(s)

mRNA	Protein	Name
NM_031979.3	NP_114185.3	Y-box-binding protein 3

Pathways from BioSystems

Homologies

Canis lupus familiaris (dog)	CSDA	NP_001003127.1
Pan troglodytes (chimpanzee)	CSDA	XP_520744.3
Mus musculus (house mouse)	Ybx3	NP_620817.2
Gallus gallus (chicken)	CSDA	NP_990737.1
Homo sapiens (human)	YBX3	NP_003642.3
Rattus norvegicus (Norway rat)	Ybx3	NP_114185.3
Xenopus tropicalis (tropical clawed frog)	ybx3	NP_001015855.1
	LOC722347	XP_001118505.1
Bos taurus (cattle)	CSDA	NP_001091543.1

Gene Ontology
Bibliography

Related articles in PubMed

Stress- and Rho-activated ZO-1-associated nucleic acid binding protein binding to p21 mRNA mediates stabilization, translation, and cell survival.
Nie M, Balda MS, Matter K
Proceedings of the National Academy of Sciences of the United States of America109(27)10897-902(2012 Jul)

Insights into RNA biology from an atlas of mammalian mRNA-binding proteins.
Castello A, Fischer B, Eichelbaum K, Horos R, Beckmann BM, Strein C, Davey NE, Humphreys DT, Preiss T, Steinmetz LM, Krijgsveld J, Hentze MW
Cell149(6)1393-406(2012 Jun)

The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts.
Baltz AG, Munschauer M, Schwanh?usser B, Vasile A, Murakawa Y, Schueler M, Youngs N, Penfold-Brown D, Drew K, Milek M, Wyler E, Bonneau R, Selbach M, Dieterich C, Landthaler M
Molecular cell46(5)674-90(2012 Jun)

A highly conserved molecular switch binds MSY-3 to regulate myogenin repression in postnatal muscle.
Berghella L, De Angelis L, De Buysscher T, Mortazavi A, Biressi S, Forcales SV, Sirabella D, Cossu G, Wold BJ
Genes & development22(15)2125-38(2008 Aug)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following Ybx3 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the Ybx3 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)	Select
ORa08900	NM_031979.3 Latest version!	Rattus norvegicus Y box binding protein 3 (Ybx3), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	TBD	$223.30 $319.00

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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

Ybx3 ( NM_031979.3 ) cDNA ORF clone, Rattus norvegicus(Norway rat) -> NP_114185.3 Rattus norvegicus Y box binding protein 3 (Ybx3), mRNA.

Price & Availability↑

CloneID	ORa08900
Clone ID Related Accession (Same CDS sequence)	NM_031979.3
Accession Version	NM_031979.3 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 1086bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2019-02-15
Organism	Rattus norvegicus(Norway rat)
Product	Y-box-binding protein 3
Comment	Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from U22893.1. On May 9, 2012 this sequence version replaced NM_031979.2. Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications. ##Evidence-Data-START## Transcript exon combination :: U22893.1, BC105778.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN01906347, SAMN01906350 [ECO:0000348] ##Evidence-Data-END##

ATGAGCGAGG CGGGCGAGGC CACCACCGGC GGCACCACGC TCCCGCAGGC CGCGGCCGAC 
GCGCCCGCCG CGGCGCCCCC GGACCCCGCG CCTAAGAGCC CGGCGGCCAG CGGCGCGCCC 
CAGGCCCCGG CGCCCGCCGC GCTGCTCGCG GGGAGCCCCG GCGGAGACGC AGCCCCCGGG 
CCCGCCCCGG CCTCATCAGC CCCCGCGGGA AGCGAGGACG CGGAGAAGAA AGTTCTCGCC 
ACCAAAGTCC TTGGCACTGT CAAATGGTTC AACGTCAGAA ATGGATATGG ATTTATAAAC 
CGAAACGACA CCAAAGAAGA TGTGTTTGTA CACCAGACTG CCATCAAGAA GAATAATCCA 
CGCAAGTATC TGCGCAGTGT GGGGGATGGA GAAACTGTAG AGTTTGATGT GGTTGAAGGA 
GAAAAGGGTG CTGAAGCAGC AAATGTGACT GGCCCAGATG GAGTTCCTGT AGAAGGGAGT 
CGCTATGCTG CTGATCGGCG CCGGTACAGA CGCGGCTACT ATGGCAGGCG CCGAGGACCT 
CCCCGTAATT ACGCTGGGGA GGAGGAGGAG GAAGGGAGCG GCAGCAGTGA AGGATTTGAG 
CCCCCTGCCG CAGATGGGCA GTTCTCTGGG GCCAGGAATC AGCTGCGCCG CCCCCAGTAT 
CGCCCTCCGT ACCGGCAGCG GCGTTTCCCG CCTTACCACG TGGGACAGAC CTTTGACCGT 
CGCTCACGGG TCTTTCCCCA TCCCAACAGA ATGCAGGCTG GTGAGATTGG AGAGATGAAG 
GATGGAGTCC CCGAGGGAGC GCAGCTCCAG GTTCATCGGA ATCCCACTTA CCGCCCAAGG 
TTCCGCAGGG GACCTGCTCG CCCACGACCT GCCCCTGCTA TTGGAGAGGC TGAAGATAAA 
GAAAATCAGC AAGCGGCCAA TGGTCCAAAC CAGCCGTCTG CCCGCCGTGG ATTCCGACGC 
CCCTACAACT ACAGGCGCCG CCCCCGTCCC CTCAACGCTG TTTCACAAGA TGGCAAAGAG 
ACCAAGGCAG GTGAAGCACC AACTGAGAAC CCCGCTCCAG CCACCGAACA GAGCAGTGCC 
GAGTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_114185.3
CDS	184..1269
Translation	MSEAGEATTGGTTLPQAAADAPAAAPPDPAPKSPAASGAPQAPAPAALLAGSPGGDAAPGPAPASSAPAGSEDAEKKVLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYAADRRRYRRGYYGRRRGPPRNYAGEEEEEGSGSSEGFEPPAADGQFSGARNQLRRPQYRPPYRQRRFPPYHVGQTFDRRSRVFPHPNRMQAGEIGEMKDGVPEGAQLQVHRNPTYRPRFRRGPARPRPAPAIGEAEDKENQQAANGPNQPSARRGFRRPYNYRRRPRPLNAVSQDGKETKAGEAPTENPAPATEQSSAE

Target ORF information:

RefSeq Version	NM_031979.3
Organism	Rattus norvegicus(Norway rat)
Definition	Rattus norvegicus Y box binding protein 3 (Ybx3), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_031979.3

ORF Insert Sequence:

ATGAGCGAGG CGGGCGAGGC CACCACCGGC GGCACCACGC TCCCGCAGGC CGCGGCCGAC 
GCGCCCGCCG CGGCGCCCCC GGACCCCGCG CCTAAGAGCC CGGCGGCCAG CGGCGCGCCC 
CAGGCCCCGG CGCCCGCCGC GCTGCTCGCG GGGAGCCCCG GCGGAGACGC AGCCCCCGGG 
CCCGCCCCGG CCTCATCAGC CCCCGCGGGA AGCGAGGACG CGGAGAAGAA AGTTCTCGCC 
ACCAAAGTCC TTGGCACTGT CAAATGGTTC AACGTCAGAA ATGGATATGG ATTTATAAAC 
CGAAACGACA CCAAAGAAGA TGTGTTTGTA CACCAGACTG CCATCAAGAA GAATAATCCA 
CGCAAGTATC TGCGCAGTGT GGGGGATGGA GAAACTGTAG AGTTTGATGT GGTTGAAGGA 
GAAAAGGGTG CTGAAGCAGC AAATGTGACT GGCCCAGATG GAGTTCCTGT AGAAGGGAGT 
CGCTATGCTG CTGATCGGCG CCGGTACAGA CGCGGCTACT ATGGCAGGCG CCGAGGACCT 
CCCCGTAATT ACGCTGGGGA GGAGGAGGAG GAAGGGAGCG GCAGCAGTGA AGGATTTGAG 
CCCCCTGCCG CAGATGGGCA GTTCTCTGGG GCCAGGAATC AGCTGCGCCG CCCCCAGTAT 
CGCCCTCCGT ACCGGCAGCG GCGTTTCCCG CCTTACCACG TGGGACAGAC CTTTGACCGT 
CGCTCACGGG TCTTTCCCCA TCCCAACAGA ATGCAGGCTG GTGAGATTGG AGAGATGAAG 
GATGGAGTCC CCGAGGGAGC GCAGCTCCAG GTTCATCGGA ATCCCACTTA CCGCCCAAGG 
TTCCGCAGGG GACCTGCTCG CCCACGACCT GCCCCTGCTA TTGGAGAGGC TGAAGATAAA 
GAAAATCAGC AAGCGGCCAA TGGTCCAAAC CAGCCGTCTG CCCGCCGTGG ATTCCGACGC 
CCCTACAACT ACAGGCGCCG CCCCCGTCCC CTCAACGCTG TTTCACAAGA TGGCAAAGAG 
ACCAAGGCAG GTGAAGCACC AACTGAGAAC CCCGCTCCAG CCACCGAACA GAGCAGTGCC 
GAGTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PubMed

Stress- and Rho-activated ZO-1-associated nucleic acid binding protein binding to p21 mRNA mediates stabilization, translation, and cell survival.
Proceedings of the National Academy of Sciences of the United States of America109(27)10897-902(2012 Jul)
Nie M,Balda MS,Matter K

Insights into RNA biology from an atlas of mammalian mRNA-binding proteins.
Cell149(6)1393-406(2012 Jun)
Castello A,Fischer B,Eichelbaum K,Horos R,Beckmann BM,Strein C,Davey NE,Humphreys DT,Preiss T,Steinmetz LM,Krijgsveld J,Hentze MW

The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts.
Molecular cell46(5)674-90(2012 Jun)
Baltz AG,Munschauer M,Schwanh?usser B,Vasile A,Murakawa Y,Schueler M,Youngs N,Penfold-Brown D,Drew K,Milek M,Wyler E,Bonneau R,Selbach M,Dieterich C,Landthaler M

A highly conserved molecular switch binds MSY-3 to regulate myogenin repression in postnatal muscle.
Genes & development22(15)2125-38(2008 Aug)
Berghella L,De Angelis L,De Buysscher T,Mortazavi A,Biressi S,Forcales SV,Sirabella D,Cossu G,Wold BJ

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Ybx3 cDNA ORF clone, Rattus norvegicus(Norway rat)

Gene

Clones

gRNAs

Related articles in PubMed

Target ORF information:

Target ORF information:

ORF Insert Sequence:

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