Pcdha1 cDNA ORF clone, Rattus norvegicus(Norway rat)

Gene
Clones
gRNAs

Summary

Gene Symbol	Pcdha1
Entrez Gene ID	393085
Full Name	protocadherin alpha 1
Synonyms	rCNRv01
General protein information	Preferred Names protocadherin alpha 1 Names protocadherin alpha-1 cadherin-related neuronal receptor 1
Gene Type	protein-coding
Organism	Rattus norvegicus(Norway rat)
Genome	Chromosome: 18 Map Location: 18p11
Summary	synaptic cadherin gene organized into three closely linked clusters [RGD, Feb 2006].

mRNA and Protein(s)

mRNA	Protein	Name
NM_199503.1	NP_955797.1	protocadherin alpha-1 precursor

Pathways from BioSystems

Homologies

Homo sapiens (human)	PCDHA1	NP_061723.1
Rattus norvegicus (Norway rat)	Pcdha1	NP_955797.1
	PCDHA1	XP_001088861.1
Mus musculus (house mouse)	Pcdha1	NP_473413.1

Gene Ontology
Bibliography

Related articles in PubMed

Sequence analysis and expression mapping of the rat clustered protocadherin gene repertoires.
Zou C, Huang W, Ying G, Wu Q
Neuroscience144(2)579-603(2007 Jan)

Comparative genomics and diversifying selection of the clustered vertebrate protocadherin genes.
Wu Q
Genetics169(4)2179-88(2005 Apr)

Interaction with protocadherin-gamma regulates the cell surface expression of protocadherin-alpha.
Murata Y, Hamada S, Morishita H, Mutoh T, Yagi T
The Journal of biological chemistry279(47)49508-16(2004 Nov)

Genomic sequence and organization of the family of CNR/Pcdhalpha genes in rat.
Yanase H, Sugino H, Yagi T
Genomics83(4)717-26(2004 Apr)

Multiple variable first exons: a mechanism for cell- and tissue-specific gene regulation.
Zhang T, Haws P, Wu Q
Genome research14(1)79-89(2004 Jan)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following Pcdha1 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the Pcdha1 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)	Select
ORa05397	NM_199503.1 Latest version!	Rattus norvegicus protocadherin alpha 1 (Pcdha1), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	12-14	$559.30 $799.00

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** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

Pcdha1 ( NM_199503.1 ) cDNA ORF clone, Rattus norvegicus(Norway rat) -> NP_955797.1 Rattus norvegicus protocadherin alpha 1 (Pcdha1), mRNA.

Price & Availability↑

CloneID	ORa05397
Clone ID Related Accession (Same CDS sequence)	NM_199503.1
Accession Version	NM_199503.1 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 2847bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2019-04-18
Organism	Rattus norvegicus(Norway rat)
Product	protocadherin alpha-1 precursor
Comment	Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AB113384.1. On Jan 12, 2005 this sequence version replaced XM_344663.1. ##Evidence-Data-START## Transcript exon combination :: AB113384.1 [ECO:0000332] ##Evidence-Data-END##

ATGCTGTTTT CCAGGCTCCG AGGCCTGAGA GCCCGGCGCC TGCTTTTGCT CTCGCTTCTG 
CTTCTCGCAG CCTGGGAGGC AGGGAGCGGC CAGCTCCATT ACTCCGTCCC AGAGGAGGCC 
AAACACGGTA CCTTCGTGGG CCGCATCGCA CAGGACCTGG GGCTGGAGTT GGCGGAGCTG 
GTACCCCGCT TGTTCAGACT GGCGTCCAAG GACCGCGGAG ACCTTCTGGA GGTAAATCTG 
CAGAATGGCA TTTTGTTTGT GAATTCTCGG ATTGACCGGG AGGAGCTGTG CGGGAGGAGC 
ACGGAGTGTA GCATCCACCT GGAGGTGATC GTGGACAGGC CGCTGCAGGT TTTCCACGTG 
GAGGTGAAGG TTAAAGATAT TAATGATAAC CCACCGATTT TCAAAGGCTC AGAACAAAGG 
ATATTTATTC CTGAAAACAG ACAGCTAGAT TCACGGTTTC CACTAGAGGG CGCCGTGGAC 
GCGGACATTG GTGCCAATTC TCTTTTAACT TACACGCTGA GCCCCACTGA TTACTTTTCT 
TTGAAGGTAG AGACCACAGA CGAACTAAGT AAATCCCTTT CGCTTGAACT GAGAAAATCT 
TTGGATAGGG AAGAAACACC AGAACTTCAG TTATTACTGA CAGCCACCGA TGGGGGCAAG 
CCAGAGTTGG AGGGGGCAGT TCGGCTGCAG ATTACTGTGC TTGATGTTAA TGACAACGCC 
CCAGTGTTTG ACCAGGCCGT CTACAGAGCA CAGTTAACAG AATCTACAGT GAATGGAACA 
TTAGTGACCA CATTAAATGC CACTGACGCT GATGAAGGGG TCAATGGTGA AGTTGTGTTT 
TCCTTTGGCA ATGACGTTTC TCCTGACATT CAAGAAAAAT TCAAAGTGGA TTCTATTTCA 
GGAGAAATTA GGGTGATCGG TGATCTAGAT TATGAAAAAA CAAAATCCTA TGAAATTCAA 
GTAAAGGCAG TTGATAAAGG AACTCCCTCC ATGTCAAATC ACTGCAAGGT TTTGGTGAAA 
GTCCTGGATG TAAATGATAA TGTTCCGGAG CTGATGATCA CATCCTTGTC TTTGCCCATC 
AAAGAGGATG CCCCACTTAA CACTGTCGTC GCACTCATTA AGGTATCCGA CATTGACTCA 
GGTGTCAATG GGCAGGTGAC CTGCTCCCTG AGTCCTCATC TCCCCTTCAA GCTCGTGTCC 
ACCTTCAAGA ATTACTATTC GCTGGTGCTG GACGGTGCTT TGGACCGAGA GACCACAGCT 
GACTATAAGG TGGTGGTGAC AGCCCGGGAT GGGGGCTTAC CCTCGCTGTG GGCCACGGCC 
AGTGTGTCTG TGGAGGTGGC TGACGTGAAC GACAATGCTC CTGCGTTCGC GCAGCCCGAA 
TACACGGTGT TCGTGAAGGA GAATAATCCG CCTGGCGCGC ACATCTTCAC CGTGTCAGCA 
GTGGACGCGG ACGCGCAGGA GAACGCGCTG GTGTCCTACT CGCTGGTGGA GCGGAGGGTA 
GGCGAGCGCT TGCTATCGAG TTACGTATCT GTGCACGCGG AGAGCGGCAA GGTGTTCGCG 
CTGCAGCCTC TGGACCATGA GGAGGTGGAG CTGCTGCAGT TCCAGGTGAG CGCGCGGGAT 
GCTGGTGTGC CTGCCCTGGG CAGCAATGTG ACTCTGCAGG TGTTTGTGTT GGATGAGAAT 
GACAATGCAC CCACGCTGCT GGGGCCTCAC GCAGGCAGCG CAGTGAGCGA AATGGTGTCA 
CGGACAGTGG GTGCAGGATA TGTGGTGACG AAAGTGCGCG CAGTGGATGC GGACTCTGGC 
TACAATGCGT GGCTGTCATA TGAACTGCAA CCTCCTACTG GTGGTGCACG CAACCCGTTC 
CGCGTGGGGC TGTACACTGG TGAGATCAGC ACCACACGCT CCCTAGATGA GGTCGATGTT 
TCACGACAGC GTCTCTTGGT CCTGGTAAAG GACCATGGAG AGCCAATGCT GACTGCTACG 
GCTACCGTGT TGGTATCTCT GGTGGAAAGC AGTCCGATTC AGAAAGCCTC TTTGCCGGTA 
TTAACTGGCG CAGTGGGTTC CCGGGCGTCG CTGGTGGATG TCAACGTGTA CCTAATCATC 
GCCATCTGCG CAGTGTCCAG CCTGTTGGTG CTCACTCTGC TGCTGTACAC AGCGCTGCGC 
TGCTCAGCGA CACCAGCAGA TGGAGTCTGT GCTCCTGGGA AGCCCATGCT GGTGTGCTCC 
AGCGCGGTGG GAAGCTGGTC ATACTCACAG CAGAGGCGAC AGAGGGTGTG CTCTGGAGAG 
GGTCTGCCCA AGACCGACCT CATGGCCTTC AGCCCGGGTC TATCCCCAGG TTTGAACATA 
GCGGAAAGAA GTGACCACCC AGAAGTAAAT TCAGATCTTT CTGGTAACCC CCGACAGCCC 
AACCCTGACT GGCGCTACTC TGCCTCGCTA AGAGCCGGCA TGCACAGCTC TGTGCACCTG 
GAGGAGGCTG GCATTCTACG GGCTGGTCCA GGAGGGCCTG ATCAACAGTG GCCAACAGTA 
TCCAGTGCAA CACCAGAACC AGAGGCAGGA GAGGTGTCCC CTCCAGTGGG CGCTGGTGTC 
AACAGCAACA GCTGGACCTT TAAATACGGA CCCGGCAACC CCAAACAGCC CGGTCCCGGT 
GAGTTGCCAG ACAAATTCAT TATCCCAGGA TCTCCTGCAA TCATCTCCAT CCGGCAGGAG 
TCTGCTAACA ACCAAATTGA CAAAAGCGAT TTTATAACCT TCGGCAAAAA GGAGGAGACC 
AAGAAAAAGA AGAAAAAGAA GAAGGGTAAC AAGACCCAGG AGAAAAAAGA GAAAGGGAAC 
AGCACGACGG ACAACAGTGA CCAGTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_955797.1
CDS	1..2847
Translation	MLFSRLRGLRARRLLLLSLLLLAAWEAGSGQLHYSVPEEAKHGTFVGRIAQDLGLELAELVPRLFRLASKDRGDLLEVNLQNGILFVNSRIDREELCGRSTECSIHLEVIVDRPLQVFHVEVKVKDINDNPPIFKGSEQRIFIPENRQLDSRFPLEGAVDADIGANSLLTYTLSPTDYFSLKVETTDELSKSLSLELRKSLDREETPELQLLLTATDGGKPELEGAVRLQITVLDVNDNAPVFDQAVYRAQLTESTVNGTLVTTLNATDADEGVNGEVVFSFGNDVSPDIQEKFKVDSISGEIRVIGDLDYEKTKSYEIQVKAVDKGTPSMSNHCKVLVKVLDVNDNVPELMITSLSLPIKEDAPLNTVVALIKVSDIDSGVNGQVTCSLSPHLPFKLVSTFKNYYSLVLDGALDRETTADYKVVVTARDGGLPSLWATASVSVEVADVNDNAPAFAQPEYTVFVKENNPPGAHIFTVSAVDADAQENALVSYSLVERRVGERLLSSYVSVHAESGKVFALQPLDHEEVELLQFQVSARDAGVPALGSNVTLQVFVLDENDNAPTLLGPHAGSAVSEMVSRTVGAGYVVTKVRAVDADSGYNAWLSYELQPPTGGARNPFRVGLYTGEISTTRSLDEVDVSRQRLLVLVKDHGEPMLTATATVLVSLVESSPIQKASLPVLTGAVGSRASLVDVNVYLIIAICAVSSLLVLTLLLYTALRCSATPADGVCAPGKPMLVCSSAVGSWSYSQQRRQRVCSGEGLPKTDLMAFSPGLSPGLNIAERSDHPEVNSDLSGNPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWPTVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQPGPGELPDKFIIPGSPAIISIRQESANNQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ

Target ORF information:

RefSeq Version	NM_199503.1
Organism	Rattus norvegicus(Norway rat)
Definition	Rattus norvegicus protocadherin alpha 1 (Pcdha1), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_199503.1

ORF Insert Sequence:

ATGCTGTTTT CCAGGCTCCG AGGCCTGAGA GCCCGGCGCC TGCTTTTGCT CTCGCTTCTG 
CTTCTCGCAG CCTGGGAGGC AGGGAGCGGC CAGCTCCATT ACTCCGTCCC AGAGGAGGCC 
AAACACGGTA CCTTCGTGGG CCGCATCGCA CAGGACCTGG GGCTGGAGTT GGCGGAGCTG 
GTACCCCGCT TGTTCAGACT GGCGTCCAAG GACCGCGGAG ACCTTCTGGA GGTAAATCTG 
CAGAATGGCA TTTTGTTTGT GAATTCTCGG ATTGACCGGG AGGAGCTGTG CGGGAGGAGC 
ACGGAGTGTA GCATCCACCT GGAGGTGATC GTGGACAGGC CGCTGCAGGT TTTCCACGTG 
GAGGTGAAGG TTAAAGATAT TAATGATAAC CCACCGATTT TCAAAGGCTC AGAACAAAGG 
ATATTTATTC CTGAAAACAG ACAGCTAGAT TCACGGTTTC CACTAGAGGG CGCCGTGGAC 
GCGGACATTG GTGCCAATTC TCTTTTAACT TACACGCTGA GCCCCACTGA TTACTTTTCT 
TTGAAGGTAG AGACCACAGA CGAACTAAGT AAATCCCTTT CGCTTGAACT GAGAAAATCT 
TTGGATAGGG AAGAAACACC AGAACTTCAG TTATTACTGA CAGCCACCGA TGGGGGCAAG 
CCAGAGTTGG AGGGGGCAGT TCGGCTGCAG ATTACTGTGC TTGATGTTAA TGACAACGCC 
CCAGTGTTTG ACCAGGCCGT CTACAGAGCA CAGTTAACAG AATCTACAGT GAATGGAACA 
TTAGTGACCA CATTAAATGC CACTGACGCT GATGAAGGGG TCAATGGTGA AGTTGTGTTT 
TCCTTTGGCA ATGACGTTTC TCCTGACATT CAAGAAAAAT TCAAAGTGGA TTCTATTTCA 
GGAGAAATTA GGGTGATCGG TGATCTAGAT TATGAAAAAA CAAAATCCTA TGAAATTCAA 
GTAAAGGCAG TTGATAAAGG AACTCCCTCC ATGTCAAATC ACTGCAAGGT TTTGGTGAAA 
GTCCTGGATG TAAATGATAA TGTTCCGGAG CTGATGATCA CATCCTTGTC TTTGCCCATC 
AAAGAGGATG CCCCACTTAA CACTGTCGTC GCACTCATTA AGGTATCCGA CATTGACTCA 
GGTGTCAATG GGCAGGTGAC CTGCTCCCTG AGTCCTCATC TCCCCTTCAA GCTCGTGTCC 
ACCTTCAAGA ATTACTATTC GCTGGTGCTG GACGGTGCTT TGGACCGAGA GACCACAGCT 
GACTATAAGG TGGTGGTGAC AGCCCGGGAT GGGGGCTTAC CCTCGCTGTG GGCCACGGCC 
AGTGTGTCTG TGGAGGTGGC TGACGTGAAC GACAATGCTC CTGCGTTCGC GCAGCCCGAA 
TACACGGTGT TCGTGAAGGA GAATAATCCG CCTGGCGCGC ACATCTTCAC CGTGTCAGCA 
GTGGACGCGG ACGCGCAGGA GAACGCGCTG GTGTCCTACT CGCTGGTGGA GCGGAGGGTA 
GGCGAGCGCT TGCTATCGAG TTACGTATCT GTGCACGCGG AGAGCGGCAA GGTGTTCGCG 
CTGCAGCCTC TGGACCATGA GGAGGTGGAG CTGCTGCAGT TCCAGGTGAG CGCGCGGGAT 
GCTGGTGTGC CTGCCCTGGG CAGCAATGTG ACTCTGCAGG TGTTTGTGTT GGATGAGAAT 
GACAATGCAC CCACGCTGCT GGGGCCTCAC GCAGGCAGCG CAGTGAGCGA AATGGTGTCA 
CGGACAGTGG GTGCAGGATA TGTGGTGACG AAAGTGCGCG CAGTGGATGC GGACTCTGGC 
TACAATGCGT GGCTGTCATA TGAACTGCAA CCTCCTACTG GTGGTGCACG CAACCCGTTC 
CGCGTGGGGC TGTACACTGG TGAGATCAGC ACCACACGCT CCCTAGATGA GGTCGATGTT 
TCACGACAGC GTCTCTTGGT CCTGGTAAAG GACCATGGAG AGCCAATGCT GACTGCTACG 
GCTACCGTGT TGGTATCTCT GGTGGAAAGC AGTCCGATTC AGAAAGCCTC TTTGCCGGTA 
TTAACTGGCG CAGTGGGTTC CCGGGCGTCG CTGGTGGATG TCAACGTGTA CCTAATCATC 
GCCATCTGCG CAGTGTCCAG CCTGTTGGTG CTCACTCTGC TGCTGTACAC AGCGCTGCGC 
TGCTCAGCGA CACCAGCAGA TGGAGTCTGT GCTCCTGGGA AGCCCATGCT GGTGTGCTCC 
AGCGCGGTGG GAAGCTGGTC ATACTCACAG CAGAGGCGAC AGAGGGTGTG CTCTGGAGAG 
GGTCTGCCCA AGACCGACCT CATGGCCTTC AGCCCGGGTC TATCCCCAGG TTTGAACATA 
GCGGAAAGAA GTGACCACCC AGAAGTAAAT TCAGATCTTT CTGGTAACCC CCGACAGCCC 
AACCCTGACT GGCGCTACTC TGCCTCGCTA AGAGCCGGCA TGCACAGCTC TGTGCACCTG 
GAGGAGGCTG GCATTCTACG GGCTGGTCCA GGAGGGCCTG ATCAACAGTG GCCAACAGTA 
TCCAGTGCAA CACCAGAACC AGAGGCAGGA GAGGTGTCCC CTCCAGTGGG CGCTGGTGTC 
AACAGCAACA GCTGGACCTT TAAATACGGA CCCGGCAACC CCAAACAGCC CGGTCCCGGT 
GAGTTGCCAG ACAAATTCAT TATCCCAGGA TCTCCTGCAA TCATCTCCAT CCGGCAGGAG 
TCTGCTAACA ACCAAATTGA CAAAAGCGAT TTTATAACCT TCGGCAAAAA GGAGGAGACC 
AAGAAAAAGA AGAAAAAGAA GAAGGGTAAC AAGACCCAGG AGAAAAAAGA GAAAGGGAAC 
AGCACGACGG ACAACAGTGA CCAGTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PubMed

Sequence analysis and expression mapping of the rat clustered protocadherin gene repertoires.
Neuroscience144(2)579-603(2007 Jan)
Zou C,Huang W,Ying G,Wu Q

Comparative genomics and diversifying selection of the clustered vertebrate protocadherin genes.
Genetics169(4)2179-88(2005 Apr)
Wu Q

Interaction with protocadherin-gamma regulates the cell surface expression of protocadherin-alpha.
The Journal of biological chemistry279(47)49508-16(2004 Nov)
Murata Y,Hamada S,Morishita H,Mutoh T,Yagi T

Genomic sequence and organization of the family of CNR/Pcdhalpha genes in rat.
Genomics83(4)717-26(2004 Apr)
Yanase H,Sugino H,Yagi T

Multiple variable first exons: a mechanism for cell- and tissue-specific gene regulation.
Genome research14(1)79-89(2004 Jan)
Zhang T,Haws P,Wu Q

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Pcdha1 cDNA ORF clone, Rattus norvegicus(Norway rat)

Gene

Clones

gRNAs

Related articles in PubMed

Target ORF information:

Target ORF information:

ORF Insert Sequence:

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