Gene Symbol | LOC4324517 |
Entrez Gene ID | 4324517 |
Full Name | geranylgeranyl transferase type-1 subunit beta |
Synonyms | HACD,OsJ_000378,OsJ_00388,P0009G03.5,PAS2B |
Gene Type | protein-coding |
Organism | Oryza sativa Japonica Group(Japanese rice) |
ORF » Species Summary » Oryza sativa Japonica Group » LOC4324517 cDNA ORF clone
Gene Symbol | LOC4324517 |
Entrez Gene ID | 4324517 |
Full Name | geranylgeranyl transferase type-1 subunit beta |
Synonyms | HACD,OsJ_000378,OsJ_00388,P0009G03.5,PAS2B |
Gene Type | protein-coding |
Organism | Oryza sativa Japonica Group(Japanese rice) |
mRNA | Protein | Name |
---|---|---|
NM_001360630.1 | NP_001347559.1 | very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2B |
XM_015780954.1 | XP_015636440.1 | geranylgeranyl transferase type-1 subunit beta |
XM_026022837.1 | XP_025878622.1 | very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2B |
Homo sapiens (human) | PGGT1B | NP_005014.2 |
Mus musculus (house mouse) | Pggt1b | NP_766215.1 |
Gallus gallus (chicken) | PGGT1B | XP_003643150.1 |
Arabidopsis thaliana (thale cress) | PGGT-I | NP_181487.1 |
Xenopus tropicalis (tropical clawed frog) | pggt1b | NP_001008137.1 |
Pan troglodytes (chimpanzee) | PGGT1B | XP_526978.2 |
Canis lupus familiaris (dog) | PGGT1B | XP_538560.2 |
Rattus norvegicus (Norway rat) | Pggt1b | NP_112344.1 |
Drosophila melanogaster (fruit fly) | betaggt-I | NP_001260061.1 |
Bos taurus (cattle) | PGGT1B | NP_001015560.1 |
Oryza sativa (rice) | Os01g0150100 | NP_001042031.1 |
LOC696437 | XP_002808482.1 | |
Danio rerio (zebrafish) | pggt1b | NP_001025426.1 |
Anopheles gambiae (African malaria mosquito) | AgaP_AGAP008406 | XP_317045.4 |
Caenorhabditis elegans (roundworm) | Y48E1B.3 | NP_001254397.1 |
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
, , Kikuchi S, Satoh K, Nagata T, Kawagashira N, Doi K, Kishimoto N, Yazaki J, Ishikawa M, Yamada H, Ooka H, Hotta I, Kojima K, Namiki T, Ohneda E, Yahagi W, Suzuki K, Li CJ, Ohtsuki K, Shishiki T, , Otomo Y, Murakami K, Iida Y, Sugano S, Fujimura T, Suzuki Y, Tsunoda Y, Kurosaki T, Kodama T, Masuda H, Kobayashi M, Xie Q, Lu M, Narikawa R, Sugiyama A, Mizuno K, Yokomizo S, Niikura J, Ikeda R, Ishibiki J, Kawamata M, Yoshimura A, Miura J, Kusumegi T, Oka M, Ryu R, Ueda M, Matsubara K, , Kawai J, Carninci P, Adachi J, Aizawa K, Arakawa T, Fukuda S, Hara A, Hashizume W, Hayatsu N, Imotani K, Ishii Y, Itoh M, Kagawa I, Kondo S, Konno H, Miyazaki A, Osato N, Ota Y, Saito R, Sasaki D, Sato K, Shibata K, Shinagawa A, Shiraki T, Yoshino M, Hayashizaki Y, Yasunishi A
Science (New York, N.Y.)301(5631)376-9(2003 Jul)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following LOC4324517 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the LOC4324517 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | OOa43987 | |
Clone ID Related Accession (Same CDS sequence) | NM_001360630.1 | |
Accession Version | NM_001360630.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1044bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-08-06 | |
Organism | Oryza sativa Japonica Group(Japanese rice) | |
Product | very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2B | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from CI595119.1, AU173029.1 and AK071085.1. |
1 | ATGGCGGAGC CGGAGCAGCC GGAGTTCGCG CGCGAGCGGC ACGTGCTGTT TCTGGAGGCT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001347559.1 |
CDS | 113..1156 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001360630.1 |
1 | ATGGCGGAGC CGGAGCAGCC GGAGTTCGCG CGCGAGCGGC ACGTGCTGTT TCTGGAGGCT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OOa00394 | |
Clone ID Related Accession (Same CDS sequence) | XM_026022837.1 | |
Accession Version | XM_026022837.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 666bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2018-08-06 | |
Organism | Oryza sativa Japonica Group(Japanese rice) | |
Product | very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2B | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_029256.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Oryza sativa Japonica Group Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGACGGGCG TCGGGTCGGC GGTGCGGCGG CTCTACCTCT CCGTCTACAA CTGGGCCGTC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_025878622.1 |
CDS | 269..934 |
Translation |
Target ORF information:
Target ORF information:
|
XM_026022837.1 |
1 | ATGACGGGCG TCGGGTCGGC GGTGCGGCGG CTCTACCTCT CCGTCTACAA CTGGGCCGTC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OOa24961 | |
Clone ID Related Accession (Same CDS sequence) | XM_015780954.1 | |
Accession Version | XM_015780954.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1836bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-02-29 | |
Organism | Oryza sativa Japonica Group(Japanese rice) | |
Product | geranylgeranyl transferase type-1 subunit beta | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_015379174.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Oryza sativa Japonica Group Annotation Release 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.5 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 3% of CDS bases ##RefSeq-Attributes-END## |
1 | ATGGCGGAGC CGGAGCAGCC GGAGTTCGCG CGCGAGCGGC ACGTGCTGTT TCTGGAGGCT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_015636440.1 |
CDS | 170..2005 |
Translation |
Target ORF information:
Target ORF information:
|
XM_015780954.1 |
1 | ATGGCGGAGC CGGAGCAGCC GGAGTTCGCG CGCGAGCGGC ACGTGCTGTT TCTGGAGGCT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. |