VPS16 cDNA ORF clone, Gallus gallus(chicken)

Gene
Clones
gRNAs

Summary

Gene Symbol	VPS16
Entrez Gene ID	426571
Full Name	VPS16, CORVET/HOPS core subunit
General protein information	Preferred Names VPS16, CORVET/HOPS core subunit Names vacuolar protein sorting-associated protein 16 homolog vacuolar protein sorting 16 homolog
Gene Type	protein-coding
Organism	Gallus gallus(chicken)

mRNA and Protein(s)

mRNA	Protein	Name
NM_001271150.1	NP_001258079.1	vacuolar protein sorting-associated protein 16 homolog

Pathways from BioSystems

Homologies

Anopheles gambiae (African malaria mosquito)	AgaP_AGAP000529	XP_310557.3
Arabidopsis thaliana (thale cress)	VCL1	NP_565879.1
Rattus norvegicus (Norway rat)	Vps16	NP_001005541.1
Danio rerio (zebrafish)	vps16	NP_001091659.1
Drosophila melanogaster (fruit fly)	Vps16A	NP_649877.1
Schizosaccharomyces pombe (fission yeast)	vps16	NP_593444.1
Neurospora crassa	NCU06268	XP_962872.2
Oryza sativa (rice)	Os01g0666800	NP_001043804.2
Homo sapiens (human)	VPS16	NP_072097.2
Bos taurus (cattle)	VPS16	NP_001015522.1
Gallus gallus (chicken)	VPS16	NP_001258079.1
Magnaporthe oryzae (rice blast fungus)	MGG_05256	XP_003712813.1
Xenopus tropicalis (tropical clawed frog)	vps16	NP_001004976.1
	VPS16	XP_002798262.1
Canis lupus familiaris (dog)	VPS16	XP_003639898.1
Mus musculus (house mouse)	Vps16	NP_085036.3

Gene Ontology
Bibliography

Related articles in PubMed

Chicken genomics resource: sequencing and annotation of 35,407 ESTs from single and multiple tissue cDNA libraries and CAP3 assembly of a chicken gene index.
Carre W, Wang X, Porter TE, Nys Y, Tang J, Bernberg E, Morgan R, Burnside J, Aggrey SE, Simon J, Cogburn LA
Physiological genomics25(3)514-24(2006 May)

A comprehensive collection of chicken cDNAs.
Boardman PE, Sanz-Ezquerro J, Overton IM, Burt DW, Bosch E, Fong WT, Tickle C, Brown WR, Wilson SA, Hubbard SJ
Current biology : CB12(22)1965-9(2002 Nov)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following VPS16 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the VPS16 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)	Select
OGa23815	NM_001271150.1 Latest version!	Gallus gallus VPS16, CORVET/HOPS core subunit (VPS16), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	12-14	$510.30 $729.00

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** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

VPS16 ( NM_001271150.1 ) cDNA ORF clone, Gallus gallus(chicken) -> NP_001258079.1 Gallus gallus VPS16, CORVET/HOPS core subunit (VPS16), mRNA.

Price & Availability↑

CloneID	OGa23815
Clone ID Related Accession (Same CDS sequence)	NM_001271150.1
Accession Version	NM_001271150.1 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 2517bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2019-01-11
Organism	Gallus gallus(chicken)
Product	vacuolar protein sorting-associated protein 16 homolog
Comment	Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AADN05000016.1, BM488794.1, BI064686.1, CO505486.1, CO503884.1, BM426760.1, BQ484981.1, BG711074.1, BU435653.1 and BU465047.1. On or before Sep 5, 2012 this sequence version replaced XM_424209.3, XM_003643164.1. Sequence Note: This RefSeq record was created from transcript and genomic sequence data because no single transcript from the same strain was available for the full length of the gene. The extent of this transcript is supported by transcript alignments and orthologous data. ##Evidence-Data-START## Transcript exon combination :: ERR2368565.65220.1 [ECO:0000332] RNAseq introns :: mixed/partial sample support SAMEA2201357, SAMEA2201358 [ECO:0000350] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end.

ATGGACTGCT ACACGGCCAA CTGGAACCCG CTGGGCGAGG AGGCCTTCTA CCGCAAGTTC 
GAGCTGTACA CCATGGAGTG GGGCCTGAAG GAGGACCTGC GGGACTGCCT GGTGGCAGCT 
GCCCCGTACG GCGGGCCCAT AGCTCTGCTG AAGAACAACG CCAGGAAGGA GAAGTCCCCC 
AGCACCCGTC CGCTGTTAGA GATCTACTCG GCCTCGGGGC TGCTCCTGGC CAGCATCCCG 
TGGAAGAGTG GTCAGCTGGT GCAGCTGGGC TGGACAGCCA GCGAGGACCT GCTGTGCATC 
CAGGAGGATG GCACCGTTCT CATCTACAAC CTCTTCTGCG AGTTCAAGCG TCACTTCAGC 
ATGGGCAACG AGGTGCTGCA GAACCACGTG CTGGAGGCGA AGGTCTTCCA CACAGAGTAT 
GGCACCGGTG TGGCCATCCT CACTGGAGCA CACCGCTTCT CACTCACCAC CAACATCGAC 
GACCTGAAGC TGCGCAGGAT GCCCGAGGTG CCAGGTCTGC AGAAGCCACC CTCTTGCTGG 
GCTGTGCTGA CCCAAGATAG AGTGACCATC GTCCTGCTGG CGGTCGGCCA GGACCTGTAC 
CTGCTGGACA ACACCTCCTG CTCCGTGGTG ACCCCCCCTG GCATGAGCCC CTCTGCTGGT 
GCCTACCTGC AGATGGCCGT GTCCTTCAAC TACCGCTGCC TGGCGCTCTT CACTGACACC 
GGCTACATCT GGATGGGGTT GGCCACGCTG AAGGACAAGC TCTGCGAGTT CAACAGCACC 
ATCCGATCTC CACCCAAGCA GATGGTTTGG TGCACGCGTC CCCGCAGCCG GCAGCGCGCC 
GTGGTGGTGG CCTGGGACCG GCAGCTCATG GTGGCTGGGG ATTCCACGGA GTGCATCCGA 
TTTGTCCTGG ATGAGGACTC CTACCTGGTG CCGGAGCCCG ATGGGGTCCG GATCTTGTCT 
CGCACCTCCC ATGAATTCCT GCATGAGATC CCAGAAGCCA GCCAGGAAAT CTTCAAAATC 
GCTTCCATGG CACCAGGGGC GCTCCTGCTA GAGGCGCAGA AGGAGTACGA GAAGGAGAGC 
CAGAAGGCAG ATGAGTACCT GCGGGAGATC AAGGACCAGA AACTGCTCCC AGAAGCAGTG 
AGCCAGTGCA TCGAGGCAGC CGGCTATGAG CACGAGCCAG AGACGCAGAA GTCCCTGCTG 
CGGGCGGCCT CCTTTGGGAA GTGCTTCATT GACAAGTTCC CCCCGGAGAG CTTTGTGCGC 
ATGTGCCAGG ACCTGCGGGT GCTCAACTCC ATCCGAGACT ACCAGATCGG CATCCCCCTC 
ACCTTCACCC AATACAAGCG ACTCACCGTT GAGGTCTTGC TGGATAGGCT GGTCCTGCGG 
CGGCTCTACC CTCTGGCCAT CAGGATCTGT GAGTACCTGC GCCTCCCGGA GATCCAGGGC 
GTCAGCCGCA TCCTGGCCCA CTGGGCCTGC TACAAGGTGC AGCAGAAGGA CAAATCTGAT 
GAGGAGGTGG CTTATGCCAT CAACCAGAAG CTGGGTGACA CGCCGGGCAT CTCCTACTCT 
GAGATTGCCG CCCGAGCGTA CGACTGCGGC AGGACAGAGC TGGCCATCAA GCTGCTGGAG 
TACGAGCCGC GCTCCGGGGA GCAGGTCCCG CTGCTGCTGA AGATGAAGCG CAGCAAGCTG 
GCCCTGAGCA AAGCCATCGA GAGCGGGGAC ACGGACCTGG TCTACACTGT TGTGCTGCAC 
CTGAAGAACG AGCTGAACCG TGGCACCTTC TTCATGACGC TGCAGAACCA GCCGGTGGCT 
CTGAGCCTCT ACCGCCAGTT TTGCAAGCAC CAGGAGCGAG AGACACTGAA GGACTTGTAC 
AACCAGGATG ACAACCACCA GGAGCTCGGC AACTTCCACG TGCATTCCAG CTACTCGGAG 
AAGCGCATTG AAGGGCGGGT AGGAGCCCTG CAGAACGCTG TGGATGAGTA CTACAAGGCC 
AAGAATGAGT TTGCTGCCAA GGCCACAGAG GATCAGATCA AGCTCCTGCG GCTCCAGCGA 
CACCTCCAGG AGGACTTTGA CAAGCCCTAC CTCGACCTCT CCCTGCACAA CACCGTCTCC 
ACTCTGATCC AGGACGGCCA CCACAAGAAA GCTGAGCAGC TGTACCGGGA CTTCAAGATC 
CCTGACAAGC GGTACTGGTG GCTGAAGATC AGTGCCTTGG CCACCCGCGG GGACTGGGAG 
GAGATGGAGA AGTTCTCCAA GAGCAAGAAG TCGCCCATTG GGTACCTGCC CTTCGTGGAG 
ATTGCTGTGA AGCACCACAA CCGCTACGAG GCCAAGAAGT ACGCGCCCCG TGTCACCCCC 
GAGCAGCGGG TCAAGGCCTT CATCCTTGTG GGGGACCTGG AGCAGGCGGC TGACGCTGCC 
ATCGAGCACA AGAACGAGGC TGAGATGAAC CTTGTCCTGT CCAAGTGCTC TGCTGCCACC 
GACAGCGCCG TGATGGAGAA GCTGAACCGG GCTCGTGCCC AGCTGCTGAA GAAGTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_001258079.1
CDS	117..2633
Translation	MDCYTANWNPLGEEAFYRKFELYTMEWGLKEDLRDCLVAAAPYGGPIALLKNNARKEKSPSTRPLLEIYSASGLLLASIPWKSGQLVQLGWTASEDLLCIQEDGTVLIYNLFCEFKRHFSMGNEVLQNHVLEAKVFHTEYGTGVAILTGAHRFSLTTNIDDLKLRRMPEVPGLQKPPSCWAVLTQDRVTIVLLAVGQDLYLLDNTSCSVVTPPGMSPSAGAYLQMAVSFNYRCLALFTDTGYIWMGLATLKDKLCEFNSTIRSPPKQMVWCTRPRSRQRAVVVAWDRQLMVAGDSTECIRFVLDEDSYLVPEPDGVRILSRTSHEFLHEIPEASQEIFKIASMAPGALLLEAQKEYEKESQKADEYLREIKDQKLLPEAVSQCIEAAGYEHEPETQKSLLRAASFGKCFIDKFPPESFVRMCQDLRVLNSIRDYQIGIPLTFTQYKRLTVEVLLDRLVLRRLYPLAIRICEYLRLPEIQGVSRILAHWACYKVQQKDKSDEEVAYAINQKLGDTPGISYSEIAARAYDCGRTELAIKLLEYEPRSGEQVPLLLKMKRSKLALSKAIESGDTDLVYTVVLHLKNELNRGTFFMTLQNQPVALSLYRQFCKHQERETLKDLYNQDDNHQELGNFHVHSSYSEKRIEGRVGALQNAVDEYYKAKNEFAAKATEDQIKLLRLQRHLQEDFDKPYLDLSLHNTVSTLIQDGHHKKAEQLYRDFKIPDKRYWWLKISALATRGDWEEMEKFSKSKKSPIGYLPFVEIAVKHHNRYEAKKYAPRVTPEQRVKAFILVGDLEQAADAAIEHKNEAEMNLVLSKCSAATDSAVMEKLNRARAQLLKK

Target ORF information:

RefSeq Version	NM_001271150.1
Organism	Gallus gallus(chicken)
Definition	Gallus gallus VPS16, CORVET/HOPS core subunit (VPS16), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_001271150.1

ORF Insert Sequence:

ATGGACTGCT ACACGGCCAA CTGGAACCCG CTGGGCGAGG AGGCCTTCTA CCGCAAGTTC 
GAGCTGTACA CCATGGAGTG GGGCCTGAAG GAGGACCTGC GGGACTGCCT GGTGGCAGCT 
GCCCCGTACG GCGGGCCCAT AGCTCTGCTG AAGAACAACG CCAGGAAGGA GAAGTCCCCC 
AGCACCCGTC CGCTGTTAGA GATCTACTCG GCCTCGGGGC TGCTCCTGGC CAGCATCCCG 
TGGAAGAGTG GTCAGCTGGT GCAGCTGGGC TGGACAGCCA GCGAGGACCT GCTGTGCATC 
CAGGAGGATG GCACCGTTCT CATCTACAAC CTCTTCTGCG AGTTCAAGCG TCACTTCAGC 
ATGGGCAACG AGGTGCTGCA GAACCACGTG CTGGAGGCGA AGGTCTTCCA CACAGAGTAT 
GGCACCGGTG TGGCCATCCT CACTGGAGCA CACCGCTTCT CACTCACCAC CAACATCGAC 
GACCTGAAGC TGCGCAGGAT GCCCGAGGTG CCAGGTCTGC AGAAGCCACC CTCTTGCTGG 
GCTGTGCTGA CCCAAGATAG AGTGACCATC GTCCTGCTGG CGGTCGGCCA GGACCTGTAC 
CTGCTGGACA ACACCTCCTG CTCCGTGGTG ACCCCCCCTG GCATGAGCCC CTCTGCTGGT 
GCCTACCTGC AGATGGCCGT GTCCTTCAAC TACCGCTGCC TGGCGCTCTT CACTGACACC 
GGCTACATCT GGATGGGGTT GGCCACGCTG AAGGACAAGC TCTGCGAGTT CAACAGCACC 
ATCCGATCTC CACCCAAGCA GATGGTTTGG TGCACGCGTC CCCGCAGCCG GCAGCGCGCC 
GTGGTGGTGG CCTGGGACCG GCAGCTCATG GTGGCTGGGG ATTCCACGGA GTGCATCCGA 
TTTGTCCTGG ATGAGGACTC CTACCTGGTG CCGGAGCCCG ATGGGGTCCG GATCTTGTCT 
CGCACCTCCC ATGAATTCCT GCATGAGATC CCAGAAGCCA GCCAGGAAAT CTTCAAAATC 
GCTTCCATGG CACCAGGGGC GCTCCTGCTA GAGGCGCAGA AGGAGTACGA GAAGGAGAGC 
CAGAAGGCAG ATGAGTACCT GCGGGAGATC AAGGACCAGA AACTGCTCCC AGAAGCAGTG 
AGCCAGTGCA TCGAGGCAGC CGGCTATGAG CACGAGCCAG AGACGCAGAA GTCCCTGCTG 
CGGGCGGCCT CCTTTGGGAA GTGCTTCATT GACAAGTTCC CCCCGGAGAG CTTTGTGCGC 
ATGTGCCAGG ACCTGCGGGT GCTCAACTCC ATCCGAGACT ACCAGATCGG CATCCCCCTC 
ACCTTCACCC AATACAAGCG ACTCACCGTT GAGGTCTTGC TGGATAGGCT GGTCCTGCGG 
CGGCTCTACC CTCTGGCCAT CAGGATCTGT GAGTACCTGC GCCTCCCGGA GATCCAGGGC 
GTCAGCCGCA TCCTGGCCCA CTGGGCCTGC TACAAGGTGC AGCAGAAGGA CAAATCTGAT 
GAGGAGGTGG CTTATGCCAT CAACCAGAAG CTGGGTGACA CGCCGGGCAT CTCCTACTCT 
GAGATTGCCG CCCGAGCGTA CGACTGCGGC AGGACAGAGC TGGCCATCAA GCTGCTGGAG 
TACGAGCCGC GCTCCGGGGA GCAGGTCCCG CTGCTGCTGA AGATGAAGCG CAGCAAGCTG 
GCCCTGAGCA AAGCCATCGA GAGCGGGGAC ACGGACCTGG TCTACACTGT TGTGCTGCAC 
CTGAAGAACG AGCTGAACCG TGGCACCTTC TTCATGACGC TGCAGAACCA GCCGGTGGCT 
CTGAGCCTCT ACCGCCAGTT TTGCAAGCAC CAGGAGCGAG AGACACTGAA GGACTTGTAC 
AACCAGGATG ACAACCACCA GGAGCTCGGC AACTTCCACG TGCATTCCAG CTACTCGGAG 
AAGCGCATTG AAGGGCGGGT AGGAGCCCTG CAGAACGCTG TGGATGAGTA CTACAAGGCC 
AAGAATGAGT TTGCTGCCAA GGCCACAGAG GATCAGATCA AGCTCCTGCG GCTCCAGCGA 
CACCTCCAGG AGGACTTTGA CAAGCCCTAC CTCGACCTCT CCCTGCACAA CACCGTCTCC 
ACTCTGATCC AGGACGGCCA CCACAAGAAA GCTGAGCAGC TGTACCGGGA CTTCAAGATC 
CCTGACAAGC GGTACTGGTG GCTGAAGATC AGTGCCTTGG CCACCCGCGG GGACTGGGAG 
GAGATGGAGA AGTTCTCCAA GAGCAAGAAG TCGCCCATTG GGTACCTGCC CTTCGTGGAG 
ATTGCTGTGA AGCACCACAA CCGCTACGAG GCCAAGAAGT ACGCGCCCCG TGTCACCCCC 
GAGCAGCGGG TCAAGGCCTT CATCCTTGTG GGGGACCTGG AGCAGGCGGC TGACGCTGCC 
ATCGAGCACA AGAACGAGGC TGAGATGAAC CTTGTCCTGT CCAAGTGCTC TGCTGCCACC 
GACAGCGCCG TGATGGAGAA GCTGAACCGG GCTCGTGCCC AGCTGCTGAA GAAGTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PubMed

Chicken genomics resource: sequencing and annotation of 35,407 ESTs from single and multiple tissue cDNA libraries and CAP3 assembly of a chicken gene index.
Physiological genomics25(3)514-24(2006 May)
Carre W,Wang X,Porter TE,Nys Y,Tang J,Bernberg E,Morgan R,Burnside J,Aggrey SE,Simon J,Cogburn LA

A comprehensive collection of chicken cDNAs.
Current biology : CB12(22)1965-9(2002 Nov)
Boardman PE,Sanz-Ezquerro J,Overton IM,Burt DW,Bosch E,Fong WT,Tickle C,Brown WR,Wilson SA,Hubbard SJ

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VPS16 cDNA ORF clone, Gallus gallus(chicken)

Gene

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gRNAs

Related articles in PubMed

Target ORF information:

Target ORF information:

ORF Insert Sequence:

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