ORF » Species Summary » Danio rerio » clp1 cDNA ORF clone

clp1 cDNA ORF clone, Danio rerio(zebrafish)

The following clp1 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the clp1 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID Accession No. Definition **Vector *Turnaround time Price (USD) Select
ODa19990 NM_001346238.1
Latest version!		 Danio rerio cleavage factor polyribonucleotide kinase subunit 1 (clp1), mRNA. pcDNA3.1-C-(k)DYK or customized vector 7-9 $258.30
$369.00

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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

  • Reference Sequences (Refseq)
    clp1 ( NM_001346238.1 ) cDNA ORF clone, Danio rerio(zebrafish) -> NP_001333167.1 Danio rerio cleavage factor polyribonucleotide kinase subunit 1 (clp1), mRNA.
    Price & Availability↑
    CloneID ODa19990
    Clone ID Related Accession (Same CDS sequence) NM_001346238.1
    Accession Version NM_001346238.1 Latest version! Documents for ORF clone product in default vector
    Sequence Information ORF Nucleotide Sequence (Length: 1332bp)
    Protein sequence
    SNP
    Vector pcDNA3.1-C-(k)DYK or customized vector User Manual
    Clone information Clone Map MSDS
    Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags
    ORF Insert Method CloneEZ™ Seamless cloning technology
    Insert Structure linear
    Update Date 2019-10-21
    Organism Danio rerio(zebrafish)
    Product polyribonucleotide 5'-hydroxyl-kinase Clp1
    Comment Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from CR855307.18. On Oct 4, 2016 this sequence version replaced XM_688892.7. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments. ##Evidence-Data-START## Transcript exon combination :: GDQH01023785.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA2168446, SAMEA2168447 [ECO:0000348] ##Evidence-Data-END## 

    1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    ATGACGGCAG AAGCTGCAGA AAAGTCTGTG GAGGAGGGCC TGAGCTCGTC GGGCAGCGCT 
    GGTTCTTCAG GCACCAGATT CGACCTGGAT AAAGAGACAG AACTGCGCTT TGAGGTGGAA 
    GCAGGAGAAC GAGTCCAGCT GGAGCTGCTG TCTGGCTTAG CTGAGATATT CGGATCTGAG 
    CTGAACCGCA ATAAGAAATA CACTTTCGGG CCTGGCTCTA AGATCGCTGT GTTTACCTGG 
    CAGGGCTGCG GTGTGGCACT TTCAGGCAAA ACAGAGGTGG CTTATGTCTC CAAAGATACC 
    CCGATGCTGC TGTACCTGAA CACACATGCG GCTCTAGAGC AGATGAGACG GCAGGCAGAG 
    AAAGACAACG AAAGAGGCCC TCGGGTAATG GTCGTCGGCC CAACCGATGT TGGAAAGTCA 
    ACAGTATGTC GGATGCTGCT GAATTATGCA GTGCGACTGG GACGCAGACC TACACTGGTG 
    GAGCTGGACG TCGGCCAGAG CAGTGTCTCA GTGCCTGGAA CCATGTCGGC TCTGTGCATC 
    GAGCGTCCTG CTGATGTTGA AGAAGGTTTC TCAGTTCAGG CGCCGCTCGT CTTTCATTTT 
    GGCTCCACCA CTCCAGGGAC AAACATCAAA CTTTACAACA AGCTGACTTC AAGCCTTGCA 
    GATGCGTTTT CCCAGCGCTG TGAGGTGAAC CGCAGAGCTA GCGTTGGCGG CTGCATCATC 
    AACACCTGTG GCTGGGTAAA AGGCTCCGGA TACCAGGCTC TGGTCCACTG CGCTTCAGCC 
    TTCCAGGTGG ATGTGGTTCT CGTCCTGGAC CAGGAGCGTT TATACAACGA GCTGAAACGA 
    GACCTTCCAC ACTTTGTCCG TGTCGTTTTA CTCCCAAAAT CCGGCGGAGT AGTGGAGCGC 
    TCCAAAGACT GCCGGCGAGA AACACGCGAC GAAAAGATCC GCGAATATTT CTACGGCTTC 
    CGAGGAACTT CGTTCTACCC TCACGCTTTT GATGTTCGCT TTTCAGATGT GCGCATTTAT 
    AAAATCGGTG CACCGTCAAT TCCTGACTCT TGTCTTCCTC TGGGGATGTC GCAAGACGAT 
    ACGCAGCTAA AGCTGGTGCC GGTGAGTCCT GGCCGAGATT TGACCCATCA TGTGTTGAGT 
    GTGAGTTCGG TGGACGATGA GGCGGAGGTG GGTCAAAGTC GGGGCATTTT GGAGAGTCCC 
    GCGTGTGGTT TTATTGTGGT GACGGCGGTG GACACACAAG CGCAGGTGAT GACGGTGCTT 
    TCGCCAGCTC CCAGACCGCT GCCACGACAC ACACTGCTCA TCATGGACAT TCGCTTCATT 
    GACCTCAAAT AA

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

    RefSeq NP_001333167.1
    CDS269..1600
    Translation

    Target ORF information:

    RefSeq Version NM_001346238.1
    Organism Danio rerio(zebrafish)
    Definition Danio rerio cleavage factor polyribonucleotide kinase subunit 1 (clp1), mRNA.

    Target ORF information:

    Epitope DYKDDDDK
    Bacterial selection AMPR
    Mammalian selection NeoR
    Vector pcDNA3.1+/C-(K)DYK
    		 NM_001346238.1

    ORF Insert Sequence:

    1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    ATGACGGCAG AAGCTGCAGA AAAGTCTGTG GAGGAGGGCC TGAGCTCGTC GGGCAGCGCT 
    GGTTCTTCAG GCACCAGATT CGACCTGGAT AAAGAGACAG AACTGCGCTT TGAGGTGGAA 
    GCAGGAGAAC GAGTCCAGCT GGAGCTGCTG TCTGGCTTAG CTGAGATATT CGGATCTGAG 
    CTGAACCGCA ATAAGAAATA CACTTTCGGG CCTGGCTCTA AGATCGCTGT GTTTACCTGG 
    CAGGGCTGCG GTGTGGCACT TTCAGGCAAA ACAGAGGTGG CTTATGTCTC CAAAGATACC 
    CCGATGCTGC TGTACCTGAA CACACATGCG GCTCTAGAGC AGATGAGACG GCAGGCAGAG 
    AAAGACAACG AAAGAGGCCC TCGGGTAATG GTCGTCGGCC CAACCGATGT TGGAAAGTCA 
    ACAGTATGTC GGATGCTGCT GAATTATGCA GTGCGACTGG GACGCAGACC TACACTGGTG 
    GAGCTGGACG TCGGCCAGAG CAGTGTCTCA GTGCCTGGAA CCATGTCGGC TCTGTGCATC 
    GAGCGTCCTG CTGATGTTGA AGAAGGTTTC TCAGTTCAGG CGCCGCTCGT CTTTCATTTT 
    GGCTCCACCA CTCCAGGGAC AAACATCAAA CTTTACAACA AGCTGACTTC AAGCCTTGCA 
    GATGCGTTTT CCCAGCGCTG TGAGGTGAAC CGCAGAGCTA GCGTTGGCGG CTGCATCATC 
    AACACCTGTG GCTGGGTAAA AGGCTCCGGA TACCAGGCTC TGGTCCACTG CGCTTCAGCC 
    TTCCAGGTGG ATGTGGTTCT CGTCCTGGAC CAGGAGCGTT TATACAACGA GCTGAAACGA 
    GACCTTCCAC ACTTTGTCCG TGTCGTTTTA CTCCCAAAAT CCGGCGGAGT AGTGGAGCGC 
    TCCAAAGACT GCCGGCGAGA AACACGCGAC GAAAAGATCC GCGAATATTT CTACGGCTTC 
    CGAGGAACTT CGTTCTACCC TCACGCTTTT GATGTTCGCT TTTCAGATGT GCGCATTTAT 
    AAAATCGGTG CACCGTCAAT TCCTGACTCT TGTCTTCCTC TGGGGATGTC GCAAGACGAT 
    ACGCAGCTAA AGCTGGTGCC GGTGAGTCCT GGCCGAGATT TGACCCATCA TGTGTTGAGT 
    GTGAGTTCGG TGGACGATGA GGCGGAGGTG GGTCAAAGTC GGGGCATTTT GGAGAGTCCC 
    GCGTGTGGTT TTATTGTGGT GACGGCGGTG GACACACAAG CGCAGGTGAT GACGGTGCTT 
    TCGCCAGCTC CCAGACCGCT GCCACGACAC ACACTGCTCA TCATGGACAT TCGCTTCATT 
    GACCTCAAAT AA

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

  • PubMed

    Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.
    BMC genomics17368(2016 05)
    Pasquier J,Cabau C,Nguyen T,Jouanno E,Severac D,Braasch I,Journot L,Pontarotti P,Klopp C,Postlethwait JH,Guiguen Y,Bobe J


    RFX transcription factors are essential for hearing in mice.
    Nature communications68549(2015 Oct)
    Elkon R,Milon B,Morrison L,Shah M,Vijayakumar S,Racherla M,Leitch CC,Silipino L,Hadi S,Weiss-Gayet M,Barras E,Schmid CD,Ait-Lounis A,Barnes A,Song Y,Eisenman DJ,Eliyahu E,Frolenkov GI,Strome SE,Durand B,Zaghloul NA,Jones SM,Reith W,Hertzano R


    CLP1 founder mutation links tRNA splicing and maturation to cerebellar development and neurodegeneration.
    Cell157(3)651-63(2014 Apr)
    Schaffer AE,Eggens VR,Caglayan AO,Reuter MS,Scott E,Coufal NG,Silhavy JL,Xue Y,Kayserili H,Yasuno K,Rosti RO,Abdellateef M,Caglar C,Kasher PR,Cazemier JL,Weterman MA,Cantagrel V,Cai N,Zweier C,Altunoglu U,Satkin NB,Aktar F,Tuysuz B,Yalcinkaya C,Caksen H,Bilguvar K,Fu XD,Trotta CR,Gabriel S,Reis A,Gunel M,Baas F,Gleeson JG


    The zebrafish reference genome sequence and its relationship to the human genome.
    Nature496(7446)498-503(2013 Apr)
    Howe K,Clark MD,Torroja CF,Torrance J,Berthelot C,Muffato M,Collins JE,Humphray S,McLaren K,Matthews L,McLaren S,Sealy I,Caccamo M,Churcher C,Scott C,Barrett JC,Koch R,Rauch GJ,White S,Chow W,Kilian B,Quintais LT,Guerra-Assun??o JA,Zhou Y,Gu Y,Yen J,Vogel JH,Eyre T,Redmond S,Banerjee R,Chi J,Fu B,Langley E,Maguire SF,Laird GK,Lloyd D,Kenyon E,Donaldson S,Sehra H,Almeida-King J,Loveland J,Trevanion S,Jones M,Quail M,Willey D,Hunt A,Burton J,Sims S,McLay K,Plumb B,Davis J,Clee C,Oliver K,Clark R,Riddle C,Elliot D,Eliott D,Threadgold G,Harden G,Ware D,Begum S,Mortimore B,Mortimer B,Kerry G,Heath P,Phillimore B,Tracey A,Corby N,Dunn M,Johnson C,Wood J,Clark S,Pelan S,Griffiths G,Smith M,Glithero R,Howden P,Barker N,Lloyd C,Stevens C,Harley J,Holt K,Panagiotidis G,Lovell J,Beasley H,Henderson C,Gordon D,Auger K,Wright D,Collins J,Raisen C,Dyer L,Leung K,Robertson L,Ambridge K,Leongamornlert D,McGuire S,Gilderthorp R,Griffiths C,Manthravadi D,Nichol S,Barker G,Whitehead S,Kay M,Brown J,Murnane C,Gray E,Humphries M,Sycamore N,Barker D,Saunders D,Wallis J,Babbage A,Hammond S,Mashreghi-Mohammadi M,Barr L,Martin S,Wray P,Ellington A,Matthews N,Ellwood M,Woodmansey R,Clark G,Cooper J,Cooper J,Tromans A,Grafham D,Skuce C,Pandian R,Andrews R,Harrison E,Kimberley A,Garnett J,Fosker N,Hall R,Garner P,Kelly D,Bird C,Palmer S,Gehring I,Berger A,Dooley CM,Ersan-?r?n Z,Eser C,Geiger H,Geisler M,Karotki L,Kirn A,Konantz J,Konantz M,Oberl?nder M,Rudolph-Geiger S,Teucke M,Lanz C,Raddatz G,Osoegawa K,Zhu B,Rapp A,Widaa S,Langford C,Yang F,Schuster SC,Carter NP,Harrow J,Ning Z,Herrero J,Searle SM,Enright A,Geisler R,Plasterk RH,Lee C,Westerfield M,de Jong PJ,Zon LI,Postlethwait JH,N?sslein-Volhard C,Hubbard TJ,Roest Crollius H,Rogers J,Stemple DL


    The zebrafish gene map defines ancestral vertebrate chromosomes.
    Genome research15(9)1307-14(2005 Sep)
    Woods IG,Wilson C,Friedlander B,Chang P,Reyes DK,Nix R,Kelly PD,Chu F,Postlethwait JH,Talbot WS


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