ATP5J cDNA ORF clone, Danio rerio(Zebrafish)

Gene
Clones
gRNAs

Summary

Gene Symbol	ATP5J
Entrez Gene ID	406599
Full Name	ATP synthase peripheral stalk subunit F6
Synonyms	atp5j,wu:fa66e04,zgc:77541
General protein information	Preferred Names ATP synthase peripheral stalk subunit F6 Names ATP synthase-coupling factor 6, mitochondrial ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F6 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F6
Gene Type	protein-coding
Organism	Danio rerio(Zebrafish)

mRNA and Protein(s)

mRNA	Protein	Name
XM_017352984.1	XP_017208473.1	ATP synthase-coupling factor 6, mitochondrial isoform X2
XM_005167990.4	XP_005168047.1	ATP synthase-coupling factor 6, mitochondrial isoform X2
NM_213307.1	NP_998472.1	ATP synthase-coupling factor 6, mitochondrial
XM_005167990.3	XP_005168047.1	ATP synthase-coupling factor 6, mitochondrial isoform X2
XM_017352970.2	XP_017208459.1	ATP synthase-coupling factor 6, mitochondrial isoform X1
XM_017352984.2	XP_017208473.1	ATP synthase-coupling factor 6, mitochondrial isoform X2
XM_017352970.1	XP_017208459.1	ATP synthase-coupling factor 6, mitochondrial isoform X1

Pathways from BioSystems

Homologies

Bos taurus (cattle)	ATP5J	NP_777142.1
Gallus gallus (chicken)	ATP5J	XP_001231639.1
Danio rerio (zebrafish)	atp5j	NP_998472.1
Homo sapiens (human)	ATP5J	NP_001003701.1
Pan troglodytes (chimpanzee)	ATP5J	XP_001158570.1
	ATP5J	XP_001105213.2
Xenopus tropicalis (tropical clawed frog)	atp5j	NP_001017042.1
Mus musculus (house mouse)	Atp5j	NP_058035.1
Canis lupus familiaris (dog)	ATP5J	XP_003434019.1
Rattus norvegicus (Norway rat)	Atp5j	NP_446054.1

Gene Ontology
Bibliography

Related articles in PubMed

Evolution of complexity in the zebrafish synapse proteome.
Bay?s ?, Collins MO, Reig-Viader R, Gou G, Goulding D, Izquierdo A, Choudhary JS, Emes RD, Grant SG
Nature communications814613(2017 Mar)

Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.
Pasquier J, Cabau C, Nguyen T, Jouanno E, Severac D, Braasch I, Journot L, Pontarotti P, Klopp C, Postlethwait JH, Guiguen Y, Bobe J
BMC genomics17368(2016 05)

Variation of DNA Methylome of Zebrafish Cells under Cold Pressure.
Han B, Li W, Chen Z, Xu Q, Luo J, Shi Y, Li X, Yan X, Zhang J
PloS one11(8)e0160358(2016)

RFX transcription factors are essential for hearing in mice.
Elkon R, Milon B, Morrison L, Shah M, Vijayakumar S, Racherla M, Leitch CC, Silipino L, Hadi S, Weiss-Gayet M, Barras E, Schmid CD, Ait-Lounis A, Barnes A, Song Y, Eisenman DJ, Eliyahu E, Frolenkov GI, Strome SE, Durand B, Zaghloul NA, Jones SM, Reith W, Hertzano R
Nature communications68549(2015 Oct)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following ATP5J gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the ATP5J cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)
ODa02730	NM_213307.1 Latest version!	Danio rerio ATP synthase peripheral stalk subunit F6 (atp5pf), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	7-9	$104.30 $149.00
ODa02730	XM_017352970.2 Latest version!	Danio rerio ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F6 (atp5j), transcript variant X1, mRNA.	pcDNA3.1-C-(k)DYK or customized vector	7-9	$104.30 $149.00
ODa05318	XM_017352984.2 Latest version!	Danio rerio ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F6 (atp5j), transcript variant X2, mRNA.	pcDNA3.1-C-(k)DYK or customized vector	7-9	$104.30 $149.00
ODa05318	XM_005167990.4 Latest version!	Danio rerio ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F6 (atp5j), transcript variant X3, mRNA.	pcDNA3.1-C-(k)DYK or customized vector	7-9	$104.30 $149.00
View Old Accession Versions >>
ODa05318	XM_005167990.3	Danio rerio ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F6 (atp5j), transcript variant X3, mRNA.	pcDNA3.1-C-(k)DYK or customized vector	7-9	$104.30 $149.00
ODa05318	XM_017352984.1	Danio rerio ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F6 (atp5j), transcript variant X2, mRNA.	pcDNA3.1-C-(k)DYK or customized vector	7-9	$104.30 $149.00
ODa02730	XM_017352970.1	Danio rerio ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F6 (atp5j), transcript variant X1, mRNA.	pcDNA3.1-C-(k)DYK or customized vector	7-9	$104.30 $149.00
Hide Old Accession Versions >>

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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

ATP5J ( NM_213307.1 ) cDNA ORF clone, Danio rerio(Zebrafish) -> NP_998472.1 Danio rerio ATP synthase peripheral stalk subunit F6 (atp5pf), mRNA.

Price & Availability↑

CloneID	ODa02730
Clone ID Related Accession (Same CDS sequence)	NM_213307.1 , XM_017352970.2 , XM_017352970.1
Accession Version	NM_213307.1 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 339bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2019-10-12
Organism	Danio rerio(zebrafish)
Product	ATP synthase-coupling factor 6, mitochondrial
Comment	Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC066613.1. ##Evidence-Data-START## Transcript exon combination :: BC066613.1, CK026118.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA3505371, SAMEA3505376 [ECO:0000348] ##Evidence-Data-END## ##RefSeq-Attributes-START## gene product(s) localized to mito. :: inferred from homology ##RefSeq-Attributes-END##

ATGGCTCTTC ACAGTGGATT TGCGCGTGTG TCGTCTCTGC TGCGTTCAGC GCTCAGCGTT 
TCTCTGCGCA GGAACATCGG CCTCTCCGCC GTCCTCTTCA ACAAGGCCAA AGACATGGAC 
CCCATTCAGA AACTCTTCCT GGACAAGATC CGAGACTACA ACAGCAAGAG CAAGGCGTCT 
GGTGGTGTAG TGGACGCTGG TCCGGTGTAT CAGAAGAATC TGGCGGAGGA AACCACTAAA 
CTGCAGCGTC TGTATGGAGG AGGAGATCTC AGCAAGTTCC CTCAGTTCAG CTTCACAGGT 
CTGACATGTG TAATGCGCAT CGTTACAGCA GATGACTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_998472.1
CDS	47..385
Translation	MALHSGFARVSSLLRSALSVSLRRNIGLSAVLFNKAKDMDPIQKLFLDKIRDYNSKSKASGGVVDAGPVYQKNLAEETTKLQRLYGGGDLSKFPQFSFTGLTCVMRIVTADD

Target ORF information:

RefSeq Version	NM_213307.1
Organism	Danio rerio(zebrafish)
Definition	Danio rerio ATP synthase peripheral stalk subunit F6 (atp5pf), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_213307.1

ORF Insert Sequence:

ATGGCTCTTC ACAGTGGATT TGCGCGTGTG TCGTCTCTGC TGCGTTCAGC GCTCAGCGTT 
TCTCTGCGCA GGAACATCGG CCTCTCCGCC GTCCTCTTCA ACAAGGCCAA AGACATGGAC 
CCCATTCAGA AACTCTTCCT GGACAAGATC CGAGACTACA ACAGCAAGAG CAAGGCGTCT 
GGTGGTGTAG TGGACGCTGG TCCGGTGTAT CAGAAGAATC TGGCGGAGGA AACCACTAAA 
CTGCAGCGTC TGTATGGAGG AGGAGATCTC AGCAAGTTCC CTCAGTTCAG CTTCACAGGT 
CTGACATGTG TAATGCGCAT CGTTACAGCA GATGACTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

ATP5J ( XM_017352970.2 ) cDNA ORF clone, Danio rerio(Zebrafish) -> XP_017208459.1 Danio rerio ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F6 (atp5j), transcript variant X1, mRNA.

Price & Availability↑

CloneID	ODa02730
Clone ID Related Accession (Same CDS sequence)	NM_213307.1 , XM_017352970.2 , XM_017352970.1
Accession Version	XM_017352970.2 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 339bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2017-06-14
Organism	Danio rerio(zebrafish)
Product	ATP synthase-coupling factor 6, mitochondrial isoform X1
Comment	Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007112.7) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jun 15, 2017 this sequence version replaced XM_017352970.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END##

ATGGCTCTTC ACAGTGGATT TGCGCGTGTG TCGTCTCTGC TGCGTTCAGC GCTCAGCGTT 
TCTCTGCGCA GGAACATCGG CCTCTCCGCC GTCCTCTTCA ACAAGGCCAA AGACATGGAC 
CCCATTCAGA AACTCTTCCT GGACAAGATC CGAGACTACA ACAGCAAGAG CAAGGCGTCT 
GGTGGTGTAG TGGACGCTGG TCCGGTGTAT CAGAAGAATC TGGCGGAGGA AACCACTAAA 
CTGCAGCGTC TGTATGGAGG AGGAGATCTC AGCAAGTTCC CTCAGTTCAG CTTCACAGGT 
CTGACATGTG TAATGCGCAT CGTTACAGCA GATGACTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	XP_017208459.1
CDS	113..451
Translation	MALHSGFARVSSLLRSALSVSLRRNIGLSAVLFNKAKDMDPIQKLFLDKIRDYNSKSKASGGVVDAGPVYQKNLAEETTKLQRLYGGGDLSKFPQFSFTGLTCVMRIVTADD

Target ORF information:

RefSeq Version	XM_017352970.2
Organism	Danio rerio(zebrafish)
Definition	Danio rerio ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F6 (atp5j), transcript variant X1, mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

XM_017352970.2

ORF Insert Sequence:

ATGGCTCTTC ACAGTGGATT TGCGCGTGTG TCGTCTCTGC TGCGTTCAGC GCTCAGCGTT 
TCTCTGCGCA GGAACATCGG CCTCTCCGCC GTCCTCTTCA ACAAGGCCAA AGACATGGAC 
CCCATTCAGA AACTCTTCCT GGACAAGATC CGAGACTACA ACAGCAAGAG CAAGGCGTCT 
GGTGGTGTAG TGGACGCTGG TCCGGTGTAT CAGAAGAATC TGGCGGAGGA AACCACTAAA 
CTGCAGCGTC TGTATGGAGG AGGAGATCTC AGCAAGTTCC CTCAGTTCAG CTTCACAGGT 
CTGACATGTG TAATGCGCAT CGTTACAGCA GATGACTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

ATP5J ( XM_017352970.1 ) cDNA ORF clone, Danio rerio(Zebrafish) -> XP_017208459.1 Danio rerio ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F6 (atp5j), transcript variant X1, mRNA.

Price & Availability↑

CloneID	ODa02730
Clone ID Related Accession (Same CDS sequence)	NM_213307.1 , XM_017352970.2 , XM_017352970.1
Accession Version	XM_017352970.1	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 339bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2016-06-23
Organism	Danio rerio(Zebrafish)
Product	ATP synthase-coupling factor 6, mitochondrial isoform X1
Comment	MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007112.6) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END##

ATGGCTCTTC ACAGTGGATT TGCGCGTGTG TCGTCTCTGC TGCGTTCAGC GCTCAGCGTT 
TCTCTGCGCA GGAACATCGG CCTCTCCGCC GTCCTCTTCA ACAAGGCCAA AGACATGGAC 
CCCATTCAGA AACTCTTCCT GGACAAGATC CGAGACTACA ACAGCAAGAG CAAGGCGTCT 
GGTGGTGTAG TGGACGCTGG TCCGGTGTAT CAGAAGAATC TGGCGGAGGA AACCACTAAA 
CTGCAGCGTC TGTATGGAGG AGGAGATCTC AGCAAGTTCC CTCAGTTCAG CTTCACAGGT 
CTGACATGTG TAATGCGCAT CGTTACAGCA GATGACTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	XP_017208459.1
CDS	116..454
Translation	MALHSGFARVSSLLRSALSVSLRRNIGLSAVLFNKAKDMDPIQKLFLDKIRDYNSKSKASGGVVDAGPVYQKNLAEETTKLQRLYGGGDLSKFPQFSFTGLTCVMRIVTADD

Target ORF information:

RefSeq Version	XM_017352970.1
Organism	Danio rerio(Zebrafish)
Definition	Danio rerio ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F6 (atp5j), transcript variant X1, mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

XM_017352970.1

ORF Insert Sequence:

ATGGCTCTTC ACAGTGGATT TGCGCGTGTG TCGTCTCTGC TGCGTTCAGC GCTCAGCGTT 
TCTCTGCGCA GGAACATCGG CCTCTCCGCC GTCCTCTTCA ACAAGGCCAA AGACATGGAC 
CCCATTCAGA AACTCTTCCT GGACAAGATC CGAGACTACA ACAGCAAGAG CAAGGCGTCT 
GGTGGTGTAG TGGACGCTGG TCCGGTGTAT CAGAAGAATC TGGCGGAGGA AACCACTAAA 
CTGCAGCGTC TGTATGGAGG AGGAGATCTC AGCAAGTTCC CTCAGTTCAG CTTCACAGGT 
CTGACATGTG TAATGCGCAT CGTTACAGCA GATGACTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

ATP5J ( XM_017352984.1 ) cDNA ORF clone, Danio rerio(Zebrafish) -> XP_017208473.1 Danio rerio ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F6 (atp5j), transcript variant X2, mRNA.

Price & Availability↑

CloneID	ODa05318
Clone ID Related Accession (Same CDS sequence)	XM_017352984.1 , XM_005167990.4 , XM_005167990.3 , XM_017352984.2
Accession Version	XM_017352984.1	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 330bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2016-06-23
Organism	Danio rerio(Zebrafish)
Product	ATP synthase-coupling factor 6, mitochondrial isoform X2
Comment	MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007112.6) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END##

ATGGCTCTTC ACAGTGGATT TGCGCGTGTG TCGTCTCTGC TGCGTTCAGC GCTCAGCGTT 
TCTCTGCGCA GGAACATCGG CCTCTCCGCC GTCCTCTTCA ACAAGGCCAA AGACATGGAC 
CCCATTCAGA AACTCTTCCT GGACAAGATC CGAGACTACA ACAGCAAGAG CAAGGCGTCT 
GGTGGTGTAG TGGACGCTGG TCCGGTGTAT CAGAAGAATC TGGCGGAGGA AACCACTAAA 
CTGCAGCGTC TGTATGGAGG AGGAGATCTC AGCAAGTTCC CTCAGTTCAG CTTCACAGAG 
CCTAAGCTGG ACGAGACGAC GACTAAATGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	XP_017208473.1
CDS	111..440
Translation	MALHSGFARVSSLLRSALSVSLRRNIGLSAVLFNKAKDMDPIQKLFLDKIRDYNSKSKASGGVVDAGPVYQKNLAEETTKLQRLYGGGDLSKFPQFSFTEPKLDETTTK

Target ORF information:

RefSeq Version	XM_017352984.1
Organism	Danio rerio(Zebrafish)
Definition	Danio rerio ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F6 (atp5j), transcript variant X2, mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

XM_017352984.1

ORF Insert Sequence:

ATGGCTCTTC ACAGTGGATT TGCGCGTGTG TCGTCTCTGC TGCGTTCAGC GCTCAGCGTT 
TCTCTGCGCA GGAACATCGG CCTCTCCGCC GTCCTCTTCA ACAAGGCCAA AGACATGGAC 
CCCATTCAGA AACTCTTCCT GGACAAGATC CGAGACTACA ACAGCAAGAG CAAGGCGTCT 
GGTGGTGTAG TGGACGCTGG TCCGGTGTAT CAGAAGAATC TGGCGGAGGA AACCACTAAA 
CTGCAGCGTC TGTATGGAGG AGGAGATCTC AGCAAGTTCC CTCAGTTCAG CTTCACAGAG 
CCTAAGCTGG ACGAGACGAC GACTAAATGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

ATP5J ( XM_005167990.4 ) cDNA ORF clone, Danio rerio(Zebrafish) -> XP_005168047.1 Danio rerio ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F6 (atp5j), transcript variant X3, mRNA.

Price & Availability↑

CloneID	ODa05318
Clone ID Related Accession (Same CDS sequence)	XM_017352984.1 , XM_005167990.4 , XM_005167990.3 , XM_017352984.2
Accession Version	XM_005167990.4 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 330bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2017-06-14
Organism	Danio rerio(zebrafish)
Product	ATP synthase-coupling factor 6, mitochondrial isoform X2
Comment	Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007112.7) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 15, 2017 this sequence version replaced XM_005167990.3. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END##

ATGGCTCTTC ACAGTGGATT TGCGCGTGTG TCGTCTCTGC TGCGTTCAGC GCTCAGCGTT 
TCTCTGCGCA GGAACATCGG CCTCTCCGCC GTCCTCTTCA ACAAGGCCAA AGACATGGAC 
CCCATTCAGA AACTCTTCCT GGACAAGATC CGAGACTACA ACAGCAAGAG CAAGGCGTCT 
GGTGGTGTAG TGGACGCTGG TCCGGTGTAT CAGAAGAATC TGGCGGAGGA AACCACTAAA 
CTGCAGCGTC TGTATGGAGG AGGAGATCTC AGCAAGTTCC CTCAGTTCAG CTTCACAGAG 
CCTAAGCTGG ACGAGACGAC GACTAAATGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	XP_005168047.1
CDS	127..456
Translation	MALHSGFARVSSLLRSALSVSLRRNIGLSAVLFNKAKDMDPIQKLFLDKIRDYNSKSKASGGVVDAGPVYQKNLAEETTKLQRLYGGGDLSKFPQFSFTEPKLDETTTK

Target ORF information:

RefSeq Version	XM_005167990.4
Organism	Danio rerio(zebrafish)
Definition	Danio rerio ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F6 (atp5j), transcript variant X3, mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

XM_005167990.4

ORF Insert Sequence:

ATGGCTCTTC ACAGTGGATT TGCGCGTGTG TCGTCTCTGC TGCGTTCAGC GCTCAGCGTT 
TCTCTGCGCA GGAACATCGG CCTCTCCGCC GTCCTCTTCA ACAAGGCCAA AGACATGGAC 
CCCATTCAGA AACTCTTCCT GGACAAGATC CGAGACTACA ACAGCAAGAG CAAGGCGTCT 
GGTGGTGTAG TGGACGCTGG TCCGGTGTAT CAGAAGAATC TGGCGGAGGA AACCACTAAA 
CTGCAGCGTC TGTATGGAGG AGGAGATCTC AGCAAGTTCC CTCAGTTCAG CTTCACAGAG 
CCTAAGCTGG ACGAGACGAC GACTAAATGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

ATP5J ( XM_005167990.3 ) cDNA ORF clone, Danio rerio(Zebrafish) -> XP_005168047.1 Danio rerio ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F6 (atp5j), transcript variant X3, mRNA.

Price & Availability↑

CloneID	ODa05318
Clone ID Related Accession (Same CDS sequence)	XM_017352984.1 , XM_005167990.4 , XM_005167990.3 , XM_017352984.2
Accession Version	XM_005167990.3	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 330bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2016-06-23
Organism	Danio rerio(Zebrafish)
Product	ATP synthase-coupling factor 6, mitochondrial isoform X2
Comment	MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007112.6) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 24, 2016 this sequence version replaced XM_005167990.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END##

ATGGCTCTTC ACAGTGGATT TGCGCGTGTG TCGTCTCTGC TGCGTTCAGC GCTCAGCGTT 
TCTCTGCGCA GGAACATCGG CCTCTCCGCC GTCCTCTTCA ACAAGGCCAA AGACATGGAC 
CCCATTCAGA AACTCTTCCT GGACAAGATC CGAGACTACA ACAGCAAGAG CAAGGCGTCT 
GGTGGTGTAG TGGACGCTGG TCCGGTGTAT CAGAAGAATC TGGCGGAGGA AACCACTAAA 
CTGCAGCGTC TGTATGGAGG AGGAGATCTC AGCAAGTTCC CTCAGTTCAG CTTCACAGAG 
CCTAAGCTGG ACGAGACGAC GACTAAATGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	XP_005168047.1
CDS	96..425
Translation	MALHSGFARVSSLLRSALSVSLRRNIGLSAVLFNKAKDMDPIQKLFLDKIRDYNSKSKASGGVVDAGPVYQKNLAEETTKLQRLYGGGDLSKFPQFSFTEPKLDETTTK

Target ORF information:

RefSeq Version	XM_005167990.3
Organism	Danio rerio(Zebrafish)
Definition	Danio rerio ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F6 (atp5j), transcript variant X3, mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

XM_005167990.3

ORF Insert Sequence:

ATGGCTCTTC ACAGTGGATT TGCGCGTGTG TCGTCTCTGC TGCGTTCAGC GCTCAGCGTT 
TCTCTGCGCA GGAACATCGG CCTCTCCGCC GTCCTCTTCA ACAAGGCCAA AGACATGGAC 
CCCATTCAGA AACTCTTCCT GGACAAGATC CGAGACTACA ACAGCAAGAG CAAGGCGTCT 
GGTGGTGTAG TGGACGCTGG TCCGGTGTAT CAGAAGAATC TGGCGGAGGA AACCACTAAA 
CTGCAGCGTC TGTATGGAGG AGGAGATCTC AGCAAGTTCC CTCAGTTCAG CTTCACAGAG 
CCTAAGCTGG ACGAGACGAC GACTAAATGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

ATP5J ( XM_017352984.2 ) cDNA ORF clone, Danio rerio(Zebrafish) -> XP_017208473.1 Danio rerio ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F6 (atp5j), transcript variant X2, mRNA.

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CloneID	ODa05318
Clone ID Related Accession (Same CDS sequence)	XM_017352984.1 , XM_005167990.4 , XM_005167990.3 , XM_017352984.2
Accession Version	XM_017352984.2 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 330bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2017-06-14
Organism	Danio rerio(zebrafish)
Product	ATP synthase-coupling factor 6, mitochondrial isoform X2
Comment	Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007112.7) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 15, 2017 this sequence version replaced XM_017352984.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END##

ATGGCTCTTC ACAGTGGATT TGCGCGTGTG TCGTCTCTGC TGCGTTCAGC GCTCAGCGTT 
TCTCTGCGCA GGAACATCGG CCTCTCCGCC GTCCTCTTCA ACAAGGCCAA AGACATGGAC 
CCCATTCAGA AACTCTTCCT GGACAAGATC CGAGACTACA ACAGCAAGAG CAAGGCGTCT 
GGTGGTGTAG TGGACGCTGG TCCGGTGTAT CAGAAGAATC TGGCGGAGGA AACCACTAAA 
CTGCAGCGTC TGTATGGAGG AGGAGATCTC AGCAAGTTCC CTCAGTTCAG CTTCACAGAG 
CCTAAGCTGG ACGAGACGAC GACTAAATGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	XP_017208473.1
CDS	110..439
Translation	MALHSGFARVSSLLRSALSVSLRRNIGLSAVLFNKAKDMDPIQKLFLDKIRDYNSKSKASGGVVDAGPVYQKNLAEETTKLQRLYGGGDLSKFPQFSFTEPKLDETTTK

Target ORF information:

RefSeq Version	XM_017352984.2
Organism	Danio rerio(zebrafish)
Definition	Danio rerio ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F6 (atp5j), transcript variant X2, mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

XM_017352984.2

ORF Insert Sequence:

ATGGCTCTTC ACAGTGGATT TGCGCGTGTG TCGTCTCTGC TGCGTTCAGC GCTCAGCGTT 
TCTCTGCGCA GGAACATCGG CCTCTCCGCC GTCCTCTTCA ACAAGGCCAA AGACATGGAC 
CCCATTCAGA AACTCTTCCT GGACAAGATC CGAGACTACA ACAGCAAGAG CAAGGCGTCT 
GGTGGTGTAG TGGACGCTGG TCCGGTGTAT CAGAAGAATC TGGCGGAGGA AACCACTAAA 
CTGCAGCGTC TGTATGGAGG AGGAGATCTC AGCAAGTTCC CTCAGTTCAG CTTCACAGAG 
CCTAAGCTGG ACGAGACGAC GACTAAATGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PubMed

Evolution of complexity in the zebrafish synapse proteome.
Nature communications814613(2017 Mar)
Bay?s ?,Collins MO,Reig-Viader R,Gou G,Goulding D,Izquierdo A,Choudhary JS,Emes RD,Grant SG

Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.
BMC genomics17368(2016 05)
Pasquier J,Cabau C,Nguyen T,Jouanno E,Severac D,Braasch I,Journot L,Pontarotti P,Klopp C,Postlethwait JH,Guiguen Y,Bobe J

Variation of DNA Methylome of Zebrafish Cells under Cold Pressure.
PloS one11(8)e0160358(2016)
Han B,Li W,Chen Z,Xu Q,Luo J,Shi Y,Li X,Yan X,Zhang J

RFX transcription factors are essential for hearing in mice.
Nature communications68549(2015 Oct)
Elkon R,Milon B,Morrison L,Shah M,Vijayakumar S,Racherla M,Leitch CC,Silipino L,Hadi S,Weiss-Gayet M,Barras E,Schmid CD,Ait-Lounis A,Barnes A,Song Y,Eisenman DJ,Eliyahu E,Frolenkov GI,Strome SE,Durand B,Zaghloul NA,Jones SM,Reith W,Hertzano R

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ATP5J cDNA ORF clone, Danio rerio(Zebrafish)

Gene

Clones

gRNAs

Related articles in PubMed

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ORF Insert Sequence:

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ORF Insert Sequence:

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Target ORF information:

ORF Insert Sequence:

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