Gene Symbol | LOC4343162 |
Entrez Gene ID | 4343162 |
Full Name | uncharacterized LOC4343162 |
Synonyms | ta7 |
Gene Type | protein-coding |
Organism | Oryza sativa Japonica Group(Japanese rice) |
ORF » Species Summary » Oryza sativa Japonica Group » LOC4343162 cDNA ORF clone
Gene Symbol | LOC4343162 |
Entrez Gene ID | 4343162 |
Full Name | uncharacterized LOC4343162 |
Synonyms | ta7 |
Gene Type | protein-coding |
Organism | Oryza sativa Japonica Group(Japanese rice) |
mRNA | Protein | Name |
---|---|---|
XM_015791708.1 | XP_015647194.1 | uncharacterized protein LOC4343162 isoform X2 |
XM_026027245.1 | XP_025883030.1 | uncharacterized LOC4343162 isoform X1 |
XM_026027247.1 | XP_025883032.1 | uncharacterized LOC4343162 isoform X2 |
XM_026027248.1 | XP_025883033.1 | uncharacterized LOC4343162 isoform X3 |
NM_001363628.1 | NP_001350557.1 | uncharacterized LOC4343162 |
XM_015791706.1 | XP_015647192.1 | uncharacterized protein LOC4343162 isoform X1 |
XM_015791707.1 | XP_015647193.1 | uncharacterized protein LOC4343162 isoform X1 |
XM_026027246.1 | XP_025883031.1 | uncharacterized LOC4343162 isoform X1 |
XM_015791709.1 | XP_015647195.1 | uncharacterized protein LOC4343162 isoform X3 |
Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction.
Jantasuriyarat C, Gowda M, Haller K, Hatfield J, Lu G, Stahlberg E, Zhou B, Li H, Kim H, Yu Y, Dean RA, Wing RA, Soderlund C, Wang GL
Plant physiology138(1)105-15(2005 May)
Development of an efficient method for the isolation of factors involved in gene transcription during rice embryo development.
Ye R, Yao QH, Xu ZH, Xue HW
The Plant journal : for cell and molecular biology38(2)348-57(2004 Apr)
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
, , Kikuchi S, Satoh K, Nagata T, Kawagashira N, Doi K, Kishimoto N, Yazaki J, Ishikawa M, Yamada H, Ooka H, Hotta I, Kojima K, Namiki T, Ohneda E, Yahagi W, Suzuki K, Li CJ, Ohtsuki K, Shishiki T, , Otomo Y, Murakami K, Iida Y, Sugano S, Fujimura T, Suzuki Y, Tsunoda Y, Kurosaki T, Kodama T, Masuda H, Kobayashi M, Xie Q, Lu M, Narikawa R, Sugiyama A, Mizuno K, Yokomizo S, Niikura J, Ikeda R, Ishibiki J, Kawamata M, Yoshimura A, Miura J, Kusumegi T, Oka M, Ryu R, Ueda M, Matsubara K, , Kawai J, Carninci P, Adachi J, Aizawa K, Arakawa T, Fukuda S, Hara A, Hashizume W, Hayatsu N, Imotani K, Ishii Y, Itoh M, Kagawa I, Kondo S, Konno H, Miyazaki A, Osato N, Ota Y, Saito R, Sasaki D, Sato K, Shibata K, Shinagawa A, Shiraki T, Yoshino M, Hayashizaki Y, Yasunishi A
Science (New York, N.Y.)301(5631)376-9(2003 Jul)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following LOC4343162 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the LOC4343162 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | OOa49067 | |
Clone ID Related Accession (Same CDS sequence) | NM_001363628.1 | |
Accession Version | NM_001363628.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1062bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-05-04 | |
Organism | Oryza sativa Japonica Group(Japanese rice) | |
Product | uncharacterized LOC4343162 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from CB675860.1, AP014963.1 and CB675861.1. ##Evidence-Data-START## RNAseq introns :: single sample supports all introns SAMN03003383, SAMN07627065 [ECO:0000348] ##Evidence-Data-END## |
1 | ATGACCTGCA GAATGGCAGC AGGCAAGCAA AAGAAACGTA TAATAAGGTC TACTAACTCA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001350557.1 |
CDS | 326..1387 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001363628.1 |
1 | ATGACCTGCA GAATGGCAGC AGGCAAGCAA AAGAAACGTA TAATAAGGTC TACTAACTCA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OOa37359 | |
Clone ID Related Accession (Same CDS sequence) | XM_026027245.1 , XM_015791706.1 , XM_015791707.1 , XM_026027246.1 | |
Accession Version | XM_026027245.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2784bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2018-08-06 | |
Organism | Oryza sativa Japonica Group(Japanese rice) | |
Product | uncharacterized LOC4343162 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_029262.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Oryza sativa Japonica Group Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGACCTGCA GAATGGCAGC AGGCAAGCAA AAGAAACGTA TAATAAGGTC TACTAACTCA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_025883030.1 |
CDS | 430..3213 |
Translation |
Target ORF information:
Target ORF information:
|
XM_026027245.1 |
1 | ATGACCTGCA GAATGGCAGC AGGCAAGCAA AAGAAACGTA TAATAAGGTC TACTAACTCA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OOa37359 | |
Clone ID Related Accession (Same CDS sequence) | XM_026027245.1 , XM_015791706.1 , XM_015791707.1 , XM_026027246.1 | |
Accession Version | XM_015791706.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2784bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-02-29 | |
Organism | Oryza sativa Japonica Group(Japanese rice) | |
Product | uncharacterized protein LOC4343162 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_015379180.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Oryza sativa Japonica Group Annotation Release 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.5 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGACCTGCA GAATGGCAGC AGGCAAGCAA AAGAAACGTA TAATAAGGTC TACTAACTCA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_015647192.1 |
CDS | 430..3213 |
Translation |
Target ORF information:
Target ORF information:
|
XM_015791706.1 |
1 | ATGACCTGCA GAATGGCAGC AGGCAAGCAA AAGAAACGTA TAATAAGGTC TACTAACTCA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OOa37359 | |
Clone ID Related Accession (Same CDS sequence) | XM_026027245.1 , XM_015791706.1 , XM_015791707.1 , XM_026027246.1 | |
Accession Version | XM_015791707.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2784bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-02-29 | |
Organism | Oryza sativa Japonica Group(Japanese rice) | |
Product | uncharacterized protein LOC4343162 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_015379180.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Oryza sativa Japonica Group Annotation Release 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.5 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGACCTGCA GAATGGCAGC AGGCAAGCAA AAGAAACGTA TAATAAGGTC TACTAACTCA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_015647193.1 |
CDS | 329..3112 |
Translation |
Target ORF information:
Target ORF information:
|
XM_015791707.1 |
1 | ATGACCTGCA GAATGGCAGC AGGCAAGCAA AAGAAACGTA TAATAAGGTC TACTAACTCA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OOa37359 | |
Clone ID Related Accession (Same CDS sequence) | XM_026027245.1 , XM_015791706.1 , XM_015791707.1 , XM_026027246.1 | |
Accession Version | XM_026027246.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2784bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2018-08-06 | |
Organism | Oryza sativa Japonica Group(Japanese rice) | |
Product | uncharacterized LOC4343162 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_029262.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Oryza sativa Japonica Group Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGACCTGCA GAATGGCAGC AGGCAAGCAA AAGAAACGTA TAATAAGGTC TACTAACTCA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_025883031.1 |
CDS | 329..3112 |
Translation |
Target ORF information:
Target ORF information:
|
XM_026027246.1 |
1 | ATGACCTGCA GAATGGCAGC AGGCAAGCAA AAGAAACGTA TAATAAGGTC TACTAACTCA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OOa37360 | |
Clone ID Related Accession (Same CDS sequence) | XM_015791708.1 , XM_026027247.1 | |
Accession Version | XM_015791708.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2706bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-02-29 | |
Organism | Oryza sativa Japonica Group(Japanese rice) | |
Product | uncharacterized protein LOC4343162 isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_015379180.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Oryza sativa Japonica Group Annotation Release 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.5 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGACCTGCA GAATGGCAGC AGGCAAGCAA AAGAAACGTA TAATAAGGTC TACTAACTCA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_015647194.1 |
CDS | 430..3135 |
Translation |
Target ORF information:
Target ORF information:
|
XM_015791708.1 |
1 | ATGACCTGCA GAATGGCAGC AGGCAAGCAA AAGAAACGTA TAATAAGGTC TACTAACTCA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OOa37360 | |
Clone ID Related Accession (Same CDS sequence) | XM_015791708.1 , XM_026027247.1 | |
Accession Version | XM_026027247.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2706bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2018-08-06 | |
Organism | Oryza sativa Japonica Group(Japanese rice) | |
Product | uncharacterized LOC4343162 isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_029262.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Oryza sativa Japonica Group Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGACCTGCA GAATGGCAGC AGGCAAGCAA AAGAAACGTA TAATAAGGTC TACTAACTCA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_025883032.1 |
CDS | 430..3135 |
Translation |
Target ORF information:
Target ORF information:
|
XM_026027247.1 |
1 | ATGACCTGCA GAATGGCAGC AGGCAAGCAA AAGAAACGTA TAATAAGGTC TACTAACTCA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OOa37361 | |
Clone ID Related Accession (Same CDS sequence) | XM_026027248.1 , XM_015791709.1 | |
Accession Version | XM_026027248.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2532bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2018-08-06 | |
Organism | Oryza sativa Japonica Group(Japanese rice) | |
Product | uncharacterized LOC4343162 isoform X3 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_029262.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Oryza sativa Japonica Group Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGACCTGCA GAATGGCAGC AGGCAAGCAA AAGAAACGTA TAATAAGGTC TACTAACTCA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_025883033.1 |
CDS | 430..2961 |
Translation |
Target ORF information:
Target ORF information:
|
XM_026027248.1 |
1 | ATGACCTGCA GAATGGCAGC AGGCAAGCAA AAGAAACGTA TAATAAGGTC TACTAACTCA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OOa37361 | |
Clone ID Related Accession (Same CDS sequence) | XM_026027248.1 , XM_015791709.1 | |
Accession Version | XM_015791709.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2532bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-02-29 | |
Organism | Oryza sativa Japonica Group(Japanese rice) | |
Product | uncharacterized protein LOC4343162 isoform X3 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_015379180.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Oryza sativa Japonica Group Annotation Release 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.5 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGACCTGCA GAATGGCAGC AGGCAAGCAA AAGAAACGTA TAATAAGGTC TACTAACTCA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_015647195.1 |
CDS | 430..2961 |
Translation |
Target ORF information:
Target ORF information:
|
XM_015791709.1 |
1 | ATGACCTGCA GAATGGCAGC AGGCAAGCAA AAGAAACGTA TAATAAGGTC TACTAACTCA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. |
Development of an efficient method for the isolation of factors involved in gene transcription during rice embryo development. |
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. |