ORF » Species Summary » Populus trichocarpa » LOC7478832 cDNA ORF clone

LOC7478832 cDNA ORF clone, Populus trichocarpa(black cottonwood)

The following LOC7478832 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the LOC7478832 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID Accession No. Definition **Vector *Turnaround time Price (USD) Select
OPa05884 XM_002302668.3
Latest version!		 Populus trichocarpa putative indole-3-acetic acid-amido synthetase GH3.9 (LOC7478832), transcript variant X1, mRNA. pcDNA3.1-C-(k)DYK or customized vector 7-9 $342.30
$489.00
OPa424007 XM_024594626.1
Latest version!		 Populus trichocarpa putative indole-3-acetic acid-amido synthetase GH3.9 (LOC7478832), transcript variant X2, mRNA. pcDNA3.1-C-(k)DYK or customized vector 14-16 $307.30
$439.00
View Old Accession Versions >>
OPa05884 XM_002302668.2 Populus trichocarpa auxin-responsive GH3 family protein (POPTR_0002s20790g) mRNA, complete cds. pcDNA3.1-C-(k)DYK or customized vector 7-9 $342.30
$489.00
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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

  • Reference Sequences (Refseq)
    LOC7478832 ( XM_002302668.2 ) cDNA ORF clone, Populus trichocarpa(black cottonwood) -> XP_002302704.1 Populus trichocarpa auxin-responsive GH3 family protein (POPTR_0002s20790g) mRNA, complete cds.
    Price & Availability↑
    CloneID OPa05884
    Clone ID Related Accession (Same CDS sequence) XM_002302668.2 , XM_002302668.3
    Accession Version XM_002302668.2 Documents for ORF clone product in default vector
    Sequence Information ORF Nucleotide Sequence (Length: 1791bp)
    Protein sequence
    SNP
    Vector pcDNA3.1-C-(k)DYK or customized vector User Manual
    Clone information Clone Map MSDS
    Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags
    ORF Insert Method CloneEZ™ Seamless cloning technology
    Insert Structure linear
    Update Date 2013-12-30
    Organism Populus trichocarpa(Populus balsamifera subsp. trichocarpa)
    Product auxin-responsive GH3 family protein
    Comment Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NC_008468). On Dec 16, 2013 this sequence version replaced XM_002302668.1. COMPLETENESS: incomplete on the 5' end. 

    1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    1741
    ATGGATGGAA AGAAATTGGA GTACAAAGGT TGGGTTGCGT TGAAAGAAAT TGAGAGGCTC 
    ACAGAGAAGG CTGATGAAGT TCAGGAAACT ATACTGAAAG CGATCTTAAT GCAAAATGGG 
    GAAACTGAGT ATTTGAGTAA GTACATGAAG GGGTCAAAGG ACGTAGACGA GTTTAAGTTC 
    CATGTCCCTG TCATTACTTA CAAGGATGTC TGTCCTTATA TCCAAAGGAT TGCTACTGGA 
    GAAGACTCTT CTCTTGTCAC CGGTCATCCT GTTACTGAGA TGTTATGCAG TTCAGGGACT 
    TCTGCAGGAG AGCCTAAGTT AATGCCATCA ATAGCAGAAG ATCTAGATCG CCGAACCTTT 
    GTATATAACC TCATCATGCC GATAATGAAC CAGTACATCT TTGGTCTTGA TGAGGGCAAA 
    GCAATGTTCC TGTACTTTAT CAAGGCGGAA ATGTCTACTC CCTGTGGCTT ACCAGCTCGA 
    ACTGTGCTAA CTAGTTACTA CAAAAGCAAA CACTTCAAGT GCCGAACCCG TGATGCATTC 
    AATGATTTCA CTAGCCCGGA CCAAGCCATC CTATGCAAGG ATAGCAACCA GAGCATGTAT 
    TGCCAGTTGC TATCTGGTCT AGTTCACCGT CATCAAGTCC TAAGGCTTGG AGCTGTGTTT 
    GCGTCAGCTT TTCTTCGAGC CATTTCATTT CTTGAGCGCA ACTGGGGTCG TCTATGCAAT 
    GATATACGCA GTGGTGACTT AGATCCTACC ATCACAGATC CTGAATGTCG TTCATGCATG 
    TCAATGTTAC TAACATCACC AAATCCTTCT CTTGCGGATG AGATTGAGGA TATTTGTAGC 
    AATACATCAT GGAAGGGAAT TTTATGTCAC CTTTGGCCCA GAGCTAAGTA CATTGAGGCG 
    GTGGTGACTG GGTCTATGGC ACAATATATA CCATCGCTTG AGTATTATAG TGAAGGGAAG 
    TTGCCCTTGG TGTGTACAAT GTATGCATCC TCAGAGTGTT ATTTCGGTGT CAATTTGAAA 
    CCTTTATGCG ATCCTGCAGA CGTGGCTTTT ACCCTCTTGC CTAACATGTG TTATTTTGAG 
    TTTATACATC TGGGAGAGAA TGGGACCTGG TTAGTGAACA AAGATGAGGA AGGAGAAGTG 
    CCCAATGATA AGCTTGTCAA TTTGGTGAAT GTTAGACTCG GCTCCTACTA TGAGTTGGTG 
    GTTACTACCT TTGCTGGGCT ATATCGTTAT CGTATAGGCG ATGTACTCCG AGTGACAGGA 
    TTTCACAATA AAGCCCCGCA ATTCCAATTC ATTTGTAGGA GAAATGTCGT TCTCAGCATT 
    GACAATGACA AAACTAACGA GGAAGATCTT CACAAGAGCA TCACAGCTGC GAAGAAATTA 
    CTGGAACCCT ATGATGCCCT CCTCGTGGAA TACACTAGCT ATGCAGACAC ATCGTCTGTA 
    CCGGGGCACT ATGTGCTGTA TTGGGAAATT CTCCATGATG CATCATTCCC AGACTCTTCA 
    GCCCAACTTG ATGTCAAACT ACTCCAAGAA TGTTGCATTA GTGTAGAAGA AGAACTTGAT 
    TATGTGTACA GGCGATGCCG TGCTCACGAC AAGTCTGTAG GACCACTAGA GATACGTGTG 
    GTGGAGTCTG GCACATTTGA GGCACTAATG GATTTTTTCA TTGGCCAAGG GGCATCAATC 
    AATCAGTATA AAACACCAAG GAGCATCAAG TCGAATGCTG CTCTTAAGTT ACTTAATTCC 
    CATGTTAAGG CATCAGCTTT TAGTCCAAGA GATCCTGCTT GGATCCCTTG A

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

    RefSeq XP_002302704.1
    CDS1..1791
    Translation

    Target ORF information:

    RefSeq Version XM_002302668.2
    Organism Populus trichocarpa(Populus balsamifera subsp. trichocarpa)
    Definition Populus trichocarpa auxin-responsive GH3 family protein (POPTR_0002s20790g) mRNA, complete cds.

    Target ORF information:

    Epitope DYKDDDDK
    Bacterial selection AMPR
    Mammalian selection NeoR
    Vector pcDNA3.1+/C-(K)DYK
    		 XM_002302668.2

    ORF Insert Sequence:

    1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    1741
    ATGGATGGAA AGAAATTGGA GTACAAAGGT TGGGTTGCGT TGAAAGAAAT TGAGAGGCTC 
    ACAGAGAAGG CTGATGAAGT TCAGGAAACT ATACTGAAAG CGATCTTAAT GCAAAATGGG 
    GAAACTGAGT ATTTGAGTAA GTACATGAAG GGGTCAAAGG ACGTAGACGA GTTTAAGTTC 
    CATGTCCCTG TCATTACTTA CAAGGATGTC TGTCCTTATA TCCAAAGGAT TGCTACTGGA 
    GAAGACTCTT CTCTTGTCAC CGGTCATCCT GTTACTGAGA TGTTATGCAG TTCAGGGACT 
    TCTGCAGGAG AGCCTAAGTT AATGCCATCA ATAGCAGAAG ATCTAGATCG CCGAACCTTT 
    GTATATAACC TCATCATGCC GATAATGAAC CAGTACATCT TTGGTCTTGA TGAGGGCAAA 
    GCAATGTTCC TGTACTTTAT CAAGGCGGAA ATGTCTACTC CCTGTGGCTT ACCAGCTCGA 
    ACTGTGCTAA CTAGTTACTA CAAAAGCAAA CACTTCAAGT GCCGAACCCG TGATGCATTC 
    AATGATTTCA CTAGCCCGGA CCAAGCCATC CTATGCAAGG ATAGCAACCA GAGCATGTAT 
    TGCCAGTTGC TATCTGGTCT AGTTCACCGT CATCAAGTCC TAAGGCTTGG AGCTGTGTTT 
    GCGTCAGCTT TTCTTCGAGC CATTTCATTT CTTGAGCGCA ACTGGGGTCG TCTATGCAAT 
    GATATACGCA GTGGTGACTT AGATCCTACC ATCACAGATC CTGAATGTCG TTCATGCATG 
    TCAATGTTAC TAACATCACC AAATCCTTCT CTTGCGGATG AGATTGAGGA TATTTGTAGC 
    AATACATCAT GGAAGGGAAT TTTATGTCAC CTTTGGCCCA GAGCTAAGTA CATTGAGGCG 
    GTGGTGACTG GGTCTATGGC ACAATATATA CCATCGCTTG AGTATTATAG TGAAGGGAAG 
    TTGCCCTTGG TGTGTACAAT GTATGCATCC TCAGAGTGTT ATTTCGGTGT CAATTTGAAA 
    CCTTTATGCG ATCCTGCAGA CGTGGCTTTT ACCCTCTTGC CTAACATGTG TTATTTTGAG 
    TTTATACATC TGGGAGAGAA TGGGACCTGG TTAGTGAACA AAGATGAGGA AGGAGAAGTG 
    CCCAATGATA AGCTTGTCAA TTTGGTGAAT GTTAGACTCG GCTCCTACTA TGAGTTGGTG 
    GTTACTACCT TTGCTGGGCT ATATCGTTAT CGTATAGGCG ATGTACTCCG AGTGACAGGA 
    TTTCACAATA AAGCCCCGCA ATTCCAATTC ATTTGTAGGA GAAATGTCGT TCTCAGCATT 
    GACAATGACA AAACTAACGA GGAAGATCTT CACAAGAGCA TCACAGCTGC GAAGAAATTA 
    CTGGAACCCT ATGATGCCCT CCTCGTGGAA TACACTAGCT ATGCAGACAC ATCGTCTGTA 
    CCGGGGCACT ATGTGCTGTA TTGGGAAATT CTCCATGATG CATCATTCCC AGACTCTTCA 
    GCCCAACTTG ATGTCAAACT ACTCCAAGAA TGTTGCATTA GTGTAGAAGA AGAACTTGAT 
    TATGTGTACA GGCGATGCCG TGCTCACGAC AAGTCTGTAG GACCACTAGA GATACGTGTG 
    GTGGAGTCTG GCACATTTGA GGCACTAATG GATTTTTTCA TTGGCCAAGG GGCATCAATC 
    AATCAGTATA AAACACCAAG GAGCATCAAG TCGAATGCTG CTCTTAAGTT ACTTAATTCC 
    CATGTTAAGG CATCAGCTTT TAGTCCAAGA GATCCTGCTT GGATCCCTTG A

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

    LOC7478832 ( XM_002302668.3 ) cDNA ORF clone, Populus trichocarpa(black cottonwood) -> XP_002302704.1 Populus trichocarpa putative indole-3-acetic acid-amido synthetase GH3.9 (LOC7478832), transcript variant X1, mRNA.
    Price & Availability↑
    CloneID OPa05884
    Clone ID Related Accession (Same CDS sequence) XM_002302668.2 , XM_002302668.3
    Accession Version XM_002302668.3 Latest version! Documents for ORF clone product in default vector
    Sequence Information ORF Nucleotide Sequence (Length: 1791bp)
    Protein sequence
    SNP
    Vector pcDNA3.1-C-(k)DYK or customized vector User Manual
    Clone information Clone Map MSDS
    Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags
    ORF Insert Method CloneEZ™ Seamless cloning technology
    Insert Structure linear
    Update Date 2018-04-08
    Organism Populus trichocarpa(black cottonwood)
    Product putative indole-3-acetic acid-amido synthetase GH3.9 isoform X1
    Comment Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_037286.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Apr 9, 2018 this sequence version replaced XM_002302668.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Populus trichocarpa Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## 

    1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    1741
    ATGGATGGAA AGAAATTGGA GTACAAAGGT TGGGTTGCGT TGAAAGAAAT TGAGAGGCTC 
    ACAGAGAAGG CTGATGAAGT TCAGGAAACT ATACTGAAAG CGATCTTAAT GCAAAATGGG 
    GAAACTGAGT ATTTGAGTAA GTACATGAAG GGGTCAAAGG ACGTAGACGA GTTTAAGTTC 
    CATGTCCCTG TCATTACTTA CAAGGATGTC TGTCCTTATA TCCAAAGGAT TGCTACTGGA 
    GAAGACTCTT CTCTTGTCAC CGGTCATCCT GTTACTGAGA TGTTATGCAG TTCAGGGACT 
    TCTGCAGGAG AGCCTAAGTT AATGCCATCA ATAGCAGAAG ATCTAGATCG CCGAACCTTT 
    GTATATAACC TCATCATGCC GATAATGAAC CAGTACATCT TTGGTCTTGA TGAGGGCAAA 
    GCAATGTTCC TGTACTTTAT CAAGGCGGAA ATGTCTACTC CCTGTGGCTT ACCAGCTCGA 
    ACTGTGCTAA CTAGTTACTA CAAAAGCAAA CACTTCAAGT GCCGAACCCG TGATGCATTC 
    AATGATTTCA CTAGCCCGGA CCAAGCCATC CTATGCAAGG ATAGCAACCA GAGCATGTAT 
    TGCCAGTTGC TATCTGGTCT AGTTCACCGT CATCAAGTCC TAAGGCTTGG AGCTGTGTTT 
    GCGTCAGCTT TTCTTCGAGC CATTTCATTT CTTGAGCGCA ACTGGGGTCG TCTATGCAAT 
    GATATACGCA GTGGTGACTT AGATCCTACC ATCACAGATC CTGAATGTCG TTCATGCATG 
    TCAATGTTAC TAACATCACC AAATCCTTCT CTTGCGGATG AGATTGAGGA TATTTGTAGC 
    AATACATCAT GGAAGGGAAT TTTATGTCAC CTTTGGCCCA GAGCTAAGTA CATTGAGGCG 
    GTGGTGACTG GGTCTATGGC ACAATATATA CCATCGCTTG AGTATTATAG TGAAGGGAAG 
    TTGCCCTTGG TGTGTACAAT GTATGCATCC TCAGAGTGTT ATTTCGGTGT CAATTTGAAA 
    CCTTTATGCG ATCCTGCAGA CGTGGCTTTT ACCCTCTTGC CTAACATGTG TTATTTTGAG 
    TTTATACATC TGGGAGAGAA TGGGACCTGG TTAGTGAACA AAGATGAGGA AGGAGAAGTG 
    CCCAATGATA AGCTTGTCAA TTTGGTGAAT GTTAGACTCG GCTCCTACTA TGAGTTGGTG 
    GTTACTACCT TTGCTGGGCT ATATCGTTAT CGTATAGGCG ATGTACTCCG AGTGACAGGA 
    TTTCACAATA AAGCCCCGCA ATTCCAATTC ATTTGTAGGA GAAATGTCGT TCTCAGCATT 
    GACAATGACA AAACTAACGA GGAAGATCTT CACAAGAGCA TCACAGCTGC GAAGAAATTA 
    CTGGAACCCT ATGATGCCCT CCTCGTGGAA TACACTAGCT ATGCAGACAC ATCGTCTGTA 
    CCGGGGCACT ATGTGCTGTA TTGGGAAATT CTCCATGATG CATCATTCCC AGACTCTTCA 
    GCCCAACTTG ATGTCAAACT ACTCCAAGAA TGTTGCATTA GTGTAGAAGA AGAACTTGAT 
    TATGTGTACA GGCGATGCCG TGCTCACGAC AAGTCTGTAG GACCACTAGA GATACGTGTG 
    GTGGAGTCTG GCACATTTGA GGCACTAATG GATTTTTTCA TTGGCCAAGG GGCATCAATC 
    AATCAGTATA AAACACCAAG GAGCATCAAG TCGAATGCTG CTCTTAAGTT ACTTAATTCC 
    CATGTTAAGG CATCAGCTTT TAGTCCAAGA GATCCTGCTT GGATCCCTTG A

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

    RefSeq XP_002302704.1
    CDS79..1869
    Translation

    Target ORF information:

    RefSeq Version XM_002302668.3
    Organism Populus trichocarpa(black cottonwood)
    Definition Populus trichocarpa putative indole-3-acetic acid-amido synthetase GH3.9 (LOC7478832), transcript variant X1, mRNA.

    Target ORF information:

    Epitope DYKDDDDK
    Bacterial selection AMPR
    Mammalian selection NeoR
    Vector pcDNA3.1+/C-(K)DYK
    		 XM_002302668.3

    ORF Insert Sequence:

    1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    1741
    ATGGATGGAA AGAAATTGGA GTACAAAGGT TGGGTTGCGT TGAAAGAAAT TGAGAGGCTC 
    ACAGAGAAGG CTGATGAAGT TCAGGAAACT ATACTGAAAG CGATCTTAAT GCAAAATGGG 
    GAAACTGAGT ATTTGAGTAA GTACATGAAG GGGTCAAAGG ACGTAGACGA GTTTAAGTTC 
    CATGTCCCTG TCATTACTTA CAAGGATGTC TGTCCTTATA TCCAAAGGAT TGCTACTGGA 
    GAAGACTCTT CTCTTGTCAC CGGTCATCCT GTTACTGAGA TGTTATGCAG TTCAGGGACT 
    TCTGCAGGAG AGCCTAAGTT AATGCCATCA ATAGCAGAAG ATCTAGATCG CCGAACCTTT 
    GTATATAACC TCATCATGCC GATAATGAAC CAGTACATCT TTGGTCTTGA TGAGGGCAAA 
    GCAATGTTCC TGTACTTTAT CAAGGCGGAA ATGTCTACTC CCTGTGGCTT ACCAGCTCGA 
    ACTGTGCTAA CTAGTTACTA CAAAAGCAAA CACTTCAAGT GCCGAACCCG TGATGCATTC 
    AATGATTTCA CTAGCCCGGA CCAAGCCATC CTATGCAAGG ATAGCAACCA GAGCATGTAT 
    TGCCAGTTGC TATCTGGTCT AGTTCACCGT CATCAAGTCC TAAGGCTTGG AGCTGTGTTT 
    GCGTCAGCTT TTCTTCGAGC CATTTCATTT CTTGAGCGCA ACTGGGGTCG TCTATGCAAT 
    GATATACGCA GTGGTGACTT AGATCCTACC ATCACAGATC CTGAATGTCG TTCATGCATG 
    TCAATGTTAC TAACATCACC AAATCCTTCT CTTGCGGATG AGATTGAGGA TATTTGTAGC 
    AATACATCAT GGAAGGGAAT TTTATGTCAC CTTTGGCCCA GAGCTAAGTA CATTGAGGCG 
    GTGGTGACTG GGTCTATGGC ACAATATATA CCATCGCTTG AGTATTATAG TGAAGGGAAG 
    TTGCCCTTGG TGTGTACAAT GTATGCATCC TCAGAGTGTT ATTTCGGTGT CAATTTGAAA 
    CCTTTATGCG ATCCTGCAGA CGTGGCTTTT ACCCTCTTGC CTAACATGTG TTATTTTGAG 
    TTTATACATC TGGGAGAGAA TGGGACCTGG TTAGTGAACA AAGATGAGGA AGGAGAAGTG 
    CCCAATGATA AGCTTGTCAA TTTGGTGAAT GTTAGACTCG GCTCCTACTA TGAGTTGGTG 
    GTTACTACCT TTGCTGGGCT ATATCGTTAT CGTATAGGCG ATGTACTCCG AGTGACAGGA 
    TTTCACAATA AAGCCCCGCA ATTCCAATTC ATTTGTAGGA GAAATGTCGT TCTCAGCATT 
    GACAATGACA AAACTAACGA GGAAGATCTT CACAAGAGCA TCACAGCTGC GAAGAAATTA 
    CTGGAACCCT ATGATGCCCT CCTCGTGGAA TACACTAGCT ATGCAGACAC ATCGTCTGTA 
    CCGGGGCACT ATGTGCTGTA TTGGGAAATT CTCCATGATG CATCATTCCC AGACTCTTCA 
    GCCCAACTTG ATGTCAAACT ACTCCAAGAA TGTTGCATTA GTGTAGAAGA AGAACTTGAT 
    TATGTGTACA GGCGATGCCG TGCTCACGAC AAGTCTGTAG GACCACTAGA GATACGTGTG 
    GTGGAGTCTG GCACATTTGA GGCACTAATG GATTTTTTCA TTGGCCAAGG GGCATCAATC 
    AATCAGTATA AAACACCAAG GAGCATCAAG TCGAATGCTG CTCTTAAGTT ACTTAATTCC 
    CATGTTAAGG CATCAGCTTT TAGTCCAAGA GATCCTGCTT GGATCCCTTG A

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

    LOC7478832 ( XM_024594626.1 ) cDNA ORF clone, Populus trichocarpa(black cottonwood) -> XP_024450394.1 Populus trichocarpa putative indole-3-acetic acid-amido synthetase GH3.9 (LOC7478832), transcript variant X2, mRNA.
    Price & Availability↑
    CloneID OPa424007
    Clone ID Related Accession (Same CDS sequence) XM_024594626.1
    Accession Version XM_024594626.1 Latest version! Documents for ORF clone product in default vector
    Sequence Information ORF Nucleotide Sequence (Length: 1770bp)
    Protein sequence
    SNP
    Vector pcDNA3.1-C-(k)DYK or customized vector User Manual
    Clone information Clone Map MSDS
    Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags
    ORF Insert Method CloneEZ™ Seamless cloning technology
    Insert Structure linear
    Update Date 2018-04-08
    Organism Populus trichocarpa(black cottonwood)
    Product putative indole-3-acetic acid-amido synthetase GH3.9 isoform X2
    Comment Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_037286.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Populus trichocarpa Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## 

    1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    1741
    ATGGATGGAA AGAAATTGGA GTACAAAGGT TGGGTTGCGT TGAAAGAAAT TGAGAGGCTC 
    ACAGAGAAGG CTGATGAAGT TCAGGAAACT ATACTGAAAG CGATCTTAAT GCAAAATGGG 
    GAAACTGAGT ATTTGAGTAA GTACATGAAG GGGTCAAAGG ACGTAGACGA GTTTAAGTTC 
    CATGTCCCTG TCATTACTTA CAAGGATGTC TGTCCTTATA TCCAAAGGAT TGCTACTGGA 
    GAAGACTCTT CTCTTGTCAC CGGTCATCCT GTTACTGAGA TGTTATGCAG TTCAGGGACT 
    TCTGCAGGAG AGCCTAAGTT AATGCCATCA ATAGCAGAAG ATCTAGATCG CCGAACCTTT 
    GTATATAACC TCATCATGCC GATAATGAAC CAGTACATCT TTGGTCTTGA TGAGGGCAAA 
    GCAATGTTCC TGTACTTTAT CAAGGCGGAA ATGTCTACTC CCTGTGGCTT ACCAGCTCGA 
    ACTGTGCTAA CTAGTTACTA CAAAAGCAAA CACTTCAAGT GCCGAACCCG TGATGCATTC 
    AATGATTTCA CTAGCCCGGA CCAAGCCATC CTATGCAAGG ATAGCAACCA GAGCATGTAT 
    TGCCAGTTGC TATCTGGTCT AGTTCACCGT CATCAAGTCC TAAGGCTTGG AGCTGTGTTT 
    GCGTCAGCTT TTCTTCGAGC CATTTCATTT CTTGAGCGCA ACTGGGGTCG TCTATGCAAT 
    GATATACGCA GTGGTGACTT AGATCCTACC ATCACAGATC CTGAATGTCG TTCATGCATG 
    TCAATGTTAC TAACATCACC AAATCCTTCT CTTGCGGATG AGATTGAGGA TATTTGTAGC 
    AATACATCAT GGAAGGGAAT TTTATGTCAC CTTTGGCCCA GAGCTAAGTA CATTGAGGCG 
    GTGGTGACTG GGTCTATGGC ACAATATATA CCATCGCTTG AGTATTATAG TGAAGGGAAG 
    TTGCCCTTGG TGTGTACAAT GTATGCATCC TCAGAGTGTT ATTTCGGTGT CAATTTGAAA 
    CCTTTATGCG ATCCTGCAGA CGTGGCTTTT ACCCTCTTGC CTAACATGTG TTATTTTGAG 
    TTTATACATC TGGGAGAGAA TGGGACCTGG TTAGTGAACA AAGATGAGGA AGGAGAAGTG 
    CCCAATGATA AGCTTGTCAA TTTGGTGAAT GTTAGACTCG GCTCCTACTA TGAGTTGGTG 
    GTTACTACCT TTGCTGGCGA TGTACTCCGA GTGACAGGAT TTCACAATAA AGCCCCGCAA 
    TTCCAATTCA TTTGTAGGAG AAATGTCGTT CTCAGCATTG ACAATGACAA AACTAACGAG 
    GAAGATCTTC ACAAGAGCAT CACAGCTGCG AAGAAATTAC TGGAACCCTA TGATGCCCTC 
    CTCGTGGAAT ACACTAGCTA TGCAGACACA TCGTCTGTAC CGGGGCACTA TGTGCTGTAT 
    TGGGAAATTC TCCATGATGC ATCATTCCCA GACTCTTCAG CCCAACTTGA TGTCAAACTA 
    CTCCAAGAAT GTTGCATTAG TGTAGAAGAA GAACTTGATT ATGTGTACAG GCGATGCCGT 
    GCTCACGACA AGTCTGTAGG ACCACTAGAG ATACGTGTGG TGGAGTCTGG CACATTTGAG 
    GCACTAATGG ATTTTTTCAT TGGCCAAGGG GCATCAATCA ATCAGTATAA AACACCAAGG 
    AGCATCAAGT CGAATGCTGC TCTTAAGTTA CTTAATTCCC ATGTTAAGGC ATCAGCTTTT 
    AGTCCAAGAG ATCCTGCTTG GATCCCTTGA

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

    RefSeq XP_024450394.1
    CDS102..1871
    Translation

    Target ORF information:

    RefSeq Version XM_024594626.1
    Organism Populus trichocarpa(black cottonwood)
    Definition Populus trichocarpa putative indole-3-acetic acid-amido synthetase GH3.9 (LOC7478832), transcript variant X2, mRNA.

    Target ORF information:

    Epitope DYKDDDDK
    Bacterial selection AMPR
    Mammalian selection NeoR
    Vector pcDNA3.1+/C-(K)DYK
    		 XM_024594626.1

    ORF Insert Sequence:

    1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    1741
    ATGGATGGAA AGAAATTGGA GTACAAAGGT TGGGTTGCGT TGAAAGAAAT TGAGAGGCTC 
    ACAGAGAAGG CTGATGAAGT TCAGGAAACT ATACTGAAAG CGATCTTAAT GCAAAATGGG 
    GAAACTGAGT ATTTGAGTAA GTACATGAAG GGGTCAAAGG ACGTAGACGA GTTTAAGTTC 
    CATGTCCCTG TCATTACTTA CAAGGATGTC TGTCCTTATA TCCAAAGGAT TGCTACTGGA 
    GAAGACTCTT CTCTTGTCAC CGGTCATCCT GTTACTGAGA TGTTATGCAG TTCAGGGACT 
    TCTGCAGGAG AGCCTAAGTT AATGCCATCA ATAGCAGAAG ATCTAGATCG CCGAACCTTT 
    GTATATAACC TCATCATGCC GATAATGAAC CAGTACATCT TTGGTCTTGA TGAGGGCAAA 
    GCAATGTTCC TGTACTTTAT CAAGGCGGAA ATGTCTACTC CCTGTGGCTT ACCAGCTCGA 
    ACTGTGCTAA CTAGTTACTA CAAAAGCAAA CACTTCAAGT GCCGAACCCG TGATGCATTC 
    AATGATTTCA CTAGCCCGGA CCAAGCCATC CTATGCAAGG ATAGCAACCA GAGCATGTAT 
    TGCCAGTTGC TATCTGGTCT AGTTCACCGT CATCAAGTCC TAAGGCTTGG AGCTGTGTTT 
    GCGTCAGCTT TTCTTCGAGC CATTTCATTT CTTGAGCGCA ACTGGGGTCG TCTATGCAAT 
    GATATACGCA GTGGTGACTT AGATCCTACC ATCACAGATC CTGAATGTCG TTCATGCATG 
    TCAATGTTAC TAACATCACC AAATCCTTCT CTTGCGGATG AGATTGAGGA TATTTGTAGC 
    AATACATCAT GGAAGGGAAT TTTATGTCAC CTTTGGCCCA GAGCTAAGTA CATTGAGGCG 
    GTGGTGACTG GGTCTATGGC ACAATATATA CCATCGCTTG AGTATTATAG TGAAGGGAAG 
    TTGCCCTTGG TGTGTACAAT GTATGCATCC TCAGAGTGTT ATTTCGGTGT CAATTTGAAA 
    CCTTTATGCG ATCCTGCAGA CGTGGCTTTT ACCCTCTTGC CTAACATGTG TTATTTTGAG 
    TTTATACATC TGGGAGAGAA TGGGACCTGG TTAGTGAACA AAGATGAGGA AGGAGAAGTG 
    CCCAATGATA AGCTTGTCAA TTTGGTGAAT GTTAGACTCG GCTCCTACTA TGAGTTGGTG 
    GTTACTACCT TTGCTGGCGA TGTACTCCGA GTGACAGGAT TTCACAATAA AGCCCCGCAA 
    TTCCAATTCA TTTGTAGGAG AAATGTCGTT CTCAGCATTG ACAATGACAA AACTAACGAG 
    GAAGATCTTC ACAAGAGCAT CACAGCTGCG AAGAAATTAC TGGAACCCTA TGATGCCCTC 
    CTCGTGGAAT ACACTAGCTA TGCAGACACA TCGTCTGTAC CGGGGCACTA TGTGCTGTAT 
    TGGGAAATTC TCCATGATGC ATCATTCCCA GACTCTTCAG CCCAACTTGA TGTCAAACTA 
    CTCCAAGAAT GTTGCATTAG TGTAGAAGAA GAACTTGATT ATGTGTACAG GCGATGCCGT 
    GCTCACGACA AGTCTGTAGG ACCACTAGAG ATACGTGTGG TGGAGTCTGG CACATTTGAG 
    GCACTAATGG ATTTTTTCAT TGGCCAAGGG GCATCAATCA ATCAGTATAA AACACCAAGG 
    AGCATCAAGT CGAATGCTGC TCTTAAGTTA CTTAATTCCC ATGTTAAGGC ATCAGCTTTT 
    AGTCCAAGAG ATCCTGCTTG GATCCCTTGA

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

  • PubMed

    The genome of black cottonwood, Populus trichocarpa (Torr. & Gray).
    Science (New York, N.Y.)313(5793)1596-604(2006 Sep)
    Tuskan GA,Difazio S,Jansson S,Bohlmann J,Grigoriev I,Hellsten U,Putnam N,Ralph S,Rombauts S,Salamov A,Schein J,Sterck L,Aerts A,Bhalerao RR,Bhalerao RP,Blaudez D,Boerjan W,Brun A,Brunner A,Busov V,Campbell M,Carlson J,Chalot M,Chapman J,Chen GL,Cooper D,Coutinho PM,Couturier J,Covert S,Cronk Q,Cunningham R,Davis J,Degroeve S,D?jardin A,Depamphilis C,Detter J,Dirks B,Dubchak I,Duplessis S,Ehlting J,Ellis B,Gendler K,Goodstein D,Gribskov M,Grimwood J,Groover A,Gunter L,Hamberger B,Heinze B,Helariutta Y,Henrissat B,Holligan D,Holt R,Huang W,Islam-Faridi N,Jones S,Jones-Rhoades M,Jorgensen R,Joshi C,Kangasj?rvi J,Karlsson J,Kelleher C,Kirkpatrick R,Kirst M,Kohler A,Kalluri U,Larimer F,Leebens-Mack J,Lepl? JC,Locascio P,Lou Y,Lucas S,Martin F,Montanini B,Napoli C,Nelson DR,Nelson C,Nieminen K,Nilsson O,Pereda V,Peter G,Philippe R,Pilate G,Poliakov A,Razumovskaya J,Richardson P,Rinaldi C,Ritland K,Rouz? P,Ryaboy D,Schmutz J,Schrader J,Segerman B,Shin H,Siddiqui A,Sterky F,Terry A,Tsai CJ,Uberbacher E,Unneberg P,Vahala J,Wall K,Wessler S,Yang G,Yin T,Douglas C,Marra M,Sandberg G,Van de Peer Y,Rokhsar D


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