ORF » Species Summary » Populus trichocarpa » POPTR_0002s24930g cDNA ORF clone

POPTR_0002s24930g cDNA ORF clone, Populus trichocarpa(Populus balsamifera subsp. trichocarpa)

The following POPTR_0002s24930g gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the POPTR_0002s24930g cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID Accession No. Definition **Vector *Turnaround time Price (USD) Select
OPa07163 XM_006386823.2
Latest version!		 Populus trichocarpa probable glucan endo-1,3-beta-glucosidase A6 (LOC18096554), mRNA. pcDNA3.1-C-(k)DYK or customized vector 7-9 $258.30
$369.00
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OPa07163 XM_006386823.1 Populus trichocarpa 3-glucanase family protein (POPTR_0002s24930g) mRNA, complete cds. pcDNA3.1-C-(k)DYK or customized vector 7-9 $258.30
$369.00
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** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

  • Reference Sequences (Refseq)
    POPTR_0002s24930g ( XM_006386823.2 ) cDNA ORF clone, Populus trichocarpa(Populus balsamifera subsp. trichocarpa) -> XP_006386885.1 Populus trichocarpa probable glucan endo-1,3-beta-glucosidase A6 (LOC18096554), mRNA.
    Price & Availability↑
    CloneID OPa07163
    Clone ID Related Accession (Same CDS sequence) XM_006386823.2 , XM_006386823.1
    Accession Version XM_006386823.2 Latest version! Documents for ORF clone product in default vector
    Sequence Information ORF Nucleotide Sequence (Length: 1398bp)
    Protein sequence
    SNP
    Vector pcDNA3.1-C-(k)DYK or customized vector User Manual
    Clone information Clone Map MSDS
    Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags
    ORF Insert Method CloneEZ™ Seamless cloning technology
    Insert Structure linear
    Update Date 2018-04-08
    Organism Populus trichocarpa(black cottonwood)
    Product probable glucan endo-1,3-beta-glucosidase A6
    Comment Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_037286.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Apr 9, 2018 this sequence version replaced XM_006386823.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Populus trichocarpa Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## 

    1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    ATGATGGGGT TAGGTTTTGT CCCCATCTTC AGTCTCGCTC TCTTAGTTTC CATTTCAAGT 
    GCAGAGATCT CTAACAAGGT GGGCATAAAC TACGGTCAGC TAGGAAACAA TCTCCCATCT 
    CCTTCAGAGT CAGTGGAGCT ACTCAAATCT CTCAAAGCCA AACGAGTCAA GATCTATGAT 
    GCCAATCCAG ACATCCTTAA ATCCCTCAAA GACACCGACA TCCAAGTTTC CATTATGATC 
    CCTAACGAAC TCATACAAAA CATCTCCAAA AGCCAATCTC TCTCGGACCA CTGGGTTAAA 
    ACCAATGTCG TCCCTTACTA CTCCGATGTC AAAATCCGAT ATCTCCTCGT CGGGAACGAA 
    ATCCTCACAA ATCCTGACAC GGGCACATGG TTCAACCTTG TACCTGCCAT GCGCCGAATC 
    AAAGCTTCCT TAAAAACCCA CAAGATCACA AAAATCAAAG TCGGCACCCC GTCTGCCTTA 
    AACGTTCTCG AGTCTTCATT CCCACCATCG AATGGCACGT TCCGGTCCGA TATCTCCGGC 
    CCGATAATTA AACCGATGTT GCGATTCTTG GACCGGACCA AATCGTTCTT TTTCATCGAT 
    GTCTACCCTT ATTTCGCCTG GGCCGATAAC CACCAAAACA TCAATTTAGA CTACGCTCTT 
    TTCAAAGCCA AGAACGTAAC ATACACCGAC CCGGGTACAA ACTTAACCTA CACCAACCTC 
    TTAGACCAGA TGTTAGACGC TGTCGCTTTT GCGATGAAAC GGCTCGGGTA TCCGGACGTT 
    CGTATTTTTA TTGCAGAAAC GGGTTGGCCT AACGATGGAG ATATTGACCA AATCGGAGCA 
    AATATTTACA ACTCAGCCAC TTTCAATCGC AATGTGATAA AAAAACTCAC AACAAAACCC 
    GCAATTGGAA CCCCAGCCCG ACCCGGTTGG GTCATACCCA GTATCATCTT CGCCCTGTAT 
    AACGAGAACC AGAAACCGGG TCCGGGTACG GAGCGACATT TCGGATTATT GTACCCAAAT 
    GGGACCAAAA TCTACGAGAT TGATCTCAGT GGAGACACGC CGTTATCAGA GTACACAAAG 
    CCCTTGCCGG CTCCGACCAA TAACGAGCCA TATAAAGGGA AGATATGGTG CATGGTTGCT 
    AAAGGAGTCA ACGAGACTGC AGTGGGAGAT GCGTTATCAT ATGCTTGCTC GCAGGGGAAT 
    AAAACTTGTG ACGCGATCCA GACCGGAAAG GAGTGTTATA AGCCGGATTC GTTGTTTTGG 
    CATGCGAGTT ATGCGTTTAG TTCGTATTGG GCCCAGTTTA AGAAAAGTGG TGGGACCTGC 
    TCCTTCAACG GGTTAGCTAC GATGACGCCT AAGGATCCAA GTTTTGGACA TTGCAAGTTC 
    CCAGGTACAA CTCTTTGA

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

    RefSeq XP_006386885.1
    CDS390..1787
    Translation

    Target ORF information:

    RefSeq Version XM_006386823.2
    Organism Populus trichocarpa(black cottonwood)
    Definition Populus trichocarpa probable glucan endo-1,3-beta-glucosidase A6 (LOC18096554), mRNA.

    Target ORF information:

    Epitope DYKDDDDK
    Bacterial selection AMPR
    Mammalian selection NeoR
    Vector pcDNA3.1+/C-(K)DYK
    		 XM_006386823.2

    ORF Insert Sequence:

    1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    ATGATGGGGT TAGGTTTTGT CCCCATCTTC AGTCTCGCTC TCTTAGTTTC CATTTCAAGT 
    GCAGAGATCT CTAACAAGGT GGGCATAAAC TACGGTCAGC TAGGAAACAA TCTCCCATCT 
    CCTTCAGAGT CAGTGGAGCT ACTCAAATCT CTCAAAGCCA AACGAGTCAA GATCTATGAT 
    GCCAATCCAG ACATCCTTAA ATCCCTCAAA GACACCGACA TCCAAGTTTC CATTATGATC 
    CCTAACGAAC TCATACAAAA CATCTCCAAA AGCCAATCTC TCTCGGACCA CTGGGTTAAA 
    ACCAATGTCG TCCCTTACTA CTCCGATGTC AAAATCCGAT ATCTCCTCGT CGGGAACGAA 
    ATCCTCACAA ATCCTGACAC GGGCACATGG TTCAACCTTG TACCTGCCAT GCGCCGAATC 
    AAAGCTTCCT TAAAAACCCA CAAGATCACA AAAATCAAAG TCGGCACCCC GTCTGCCTTA 
    AACGTTCTCG AGTCTTCATT CCCACCATCG AATGGCACGT TCCGGTCCGA TATCTCCGGC 
    CCGATAATTA AACCGATGTT GCGATTCTTG GACCGGACCA AATCGTTCTT TTTCATCGAT 
    GTCTACCCTT ATTTCGCCTG GGCCGATAAC CACCAAAACA TCAATTTAGA CTACGCTCTT 
    TTCAAAGCCA AGAACGTAAC ATACACCGAC CCGGGTACAA ACTTAACCTA CACCAACCTC 
    TTAGACCAGA TGTTAGACGC TGTCGCTTTT GCGATGAAAC GGCTCGGGTA TCCGGACGTT 
    CGTATTTTTA TTGCAGAAAC GGGTTGGCCT AACGATGGAG ATATTGACCA AATCGGAGCA 
    AATATTTACA ACTCAGCCAC TTTCAATCGC AATGTGATAA AAAAACTCAC AACAAAACCC 
    GCAATTGGAA CCCCAGCCCG ACCCGGTTGG GTCATACCCA GTATCATCTT CGCCCTGTAT 
    AACGAGAACC AGAAACCGGG TCCGGGTACG GAGCGACATT TCGGATTATT GTACCCAAAT 
    GGGACCAAAA TCTACGAGAT TGATCTCAGT GGAGACACGC CGTTATCAGA GTACACAAAG 
    CCCTTGCCGG CTCCGACCAA TAACGAGCCA TATAAAGGGA AGATATGGTG CATGGTTGCT 
    AAAGGAGTCA ACGAGACTGC AGTGGGAGAT GCGTTATCAT ATGCTTGCTC GCAGGGGAAT 
    AAAACTTGTG ACGCGATCCA GACCGGAAAG GAGTGTTATA AGCCGGATTC GTTGTTTTGG 
    CATGCGAGTT ATGCGTTTAG TTCGTATTGG GCCCAGTTTA AGAAAAGTGG TGGGACCTGC 
    TCCTTCAACG GGTTAGCTAC GATGACGCCT AAGGATCCAA GTTTTGGACA TTGCAAGTTC 
    CCAGGTACAA CTCTTTGA

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

    POPTR_0002s24930g ( XM_006386823.1 ) cDNA ORF clone, Populus trichocarpa(Populus balsamifera subsp. trichocarpa) -> XP_006386885.1 Populus trichocarpa 3-glucanase family protein (POPTR_0002s24930g) mRNA, complete cds.
    Price & Availability↑
    CloneID OPa07163
    Clone ID Related Accession (Same CDS sequence) XM_006386823.2 , XM_006386823.1
    Accession Version XM_006386823.1 Documents for ORF clone product in default vector
    Sequence Information ORF Nucleotide Sequence (Length: 1398bp)
    Protein sequence
    SNP
    Vector pcDNA3.1-C-(k)DYK or customized vector User Manual
    Clone information Clone Map MSDS
    Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags
    ORF Insert Method CloneEZ™ Seamless cloning technology
    Insert Structure linear
    Update Date 2013-12-30
    Organism Populus trichocarpa(Populus balsamifera subsp. trichocarpa)
    Product 3-glucanase family protein
    Comment Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NC_008468). 

    1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    ATGATGGGGT TAGGTTTTGT CCCCATCTTC AGTCTCGCTC TCTTAGTTTC CATTTCAAGT 
    GCAGAGATCT CTAACAAGGT GGGCATAAAC TACGGTCAGC TAGGAAACAA TCTCCCATCT 
    CCTTCAGAGT CAGTGGAGCT ACTCAAATCT CTCAAAGCCA AACGAGTCAA GATCTATGAT 
    GCCAATCCAG ACATCCTTAA ATCCCTCAAA GACACCGACA TCCAAGTTTC CATTATGATC 
    CCTAACGAAC TCATACAAAA CATCTCCAAA AGCCAATCTC TCTCGGACCA CTGGGTTAAA 
    ACCAATGTCG TCCCTTACTA CTCCGATGTC AAAATCCGAT ATCTCCTCGT CGGGAACGAA 
    ATCCTCACAA ATCCTGACAC GGGCACATGG TTCAACCTTG TACCTGCCAT GCGCCGAATC 
    AAAGCTTCCT TAAAAACCCA CAAGATCACA AAAATCAAAG TCGGCACCCC GTCTGCCTTA 
    AACGTTCTCG AGTCTTCATT CCCACCATCG AATGGCACGT TCCGGTCCGA TATCTCCGGC 
    CCGATAATTA AACCGATGTT GCGATTCTTG GACCGGACCA AATCGTTCTT TTTCATCGAT 
    GTCTACCCTT ATTTCGCCTG GGCCGATAAC CACCAAAACA TCAATTTAGA CTACGCTCTT 
    TTCAAAGCCA AGAACGTAAC ATACACCGAC CCGGGTACAA ACTTAACCTA CACCAACCTC 
    TTAGACCAGA TGTTAGACGC TGTCGCTTTT GCGATGAAAC GGCTCGGGTA TCCGGACGTT 
    CGTATTTTTA TTGCAGAAAC GGGTTGGCCT AACGATGGAG ATATTGACCA AATCGGAGCA 
    AATATTTACA ACTCAGCCAC TTTCAATCGC AATGTGATAA AAAAACTCAC AACAAAACCC 
    GCAATTGGAA CCCCAGCCCG ACCCGGTTGG GTCATACCCA GTATCATCTT CGCCCTGTAT 
    AACGAGAACC AGAAACCGGG TCCGGGTACG GAGCGACATT TCGGATTATT GTACCCAAAT 
    GGGACCAAAA TCTACGAGAT TGATCTCAGT GGAGACACGC CGTTATCAGA GTACACAAAG 
    CCCTTGCCGG CTCCGACCAA TAACGAGCCA TATAAAGGGA AGATATGGTG CATGGTTGCT 
    AAAGGAGTCA ACGAGACTGC AGTGGGAGAT GCGTTATCAT ATGCTTGCTC GCAGGGGAAT 
    AAAACTTGTG ACGCGATCCA GACCGGAAAG GAGTGTTATA AGCCGGATTC GTTGTTTTGG 
    CATGCGAGTT ATGCGTTTAG TTCGTATTGG GCCCAGTTTA AGAAAAGTGG TGGGACCTGC 
    TCCTTCAACG GGTTAGCTAC GATGACGCCT AAGGATCCAA GTTTTGGACA TTGCAAGTTC 
    CCAGGTACAA CTCTTTGA

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

    RefSeq XP_006386885.1
    CDS383..1780
    Translation

    Target ORF information:

    RefSeq Version XM_006386823.1
    Organism Populus trichocarpa(Populus balsamifera subsp. trichocarpa)
    Definition Populus trichocarpa 3-glucanase family protein (POPTR_0002s24930g) mRNA, complete cds.

    Target ORF information:

    Epitope DYKDDDDK
    Bacterial selection AMPR
    Mammalian selection NeoR
    Vector pcDNA3.1+/C-(K)DYK
    		 XM_006386823.1

    ORF Insert Sequence:

    1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    ATGATGGGGT TAGGTTTTGT CCCCATCTTC AGTCTCGCTC TCTTAGTTTC CATTTCAAGT 
    GCAGAGATCT CTAACAAGGT GGGCATAAAC TACGGTCAGC TAGGAAACAA TCTCCCATCT 
    CCTTCAGAGT CAGTGGAGCT ACTCAAATCT CTCAAAGCCA AACGAGTCAA GATCTATGAT 
    GCCAATCCAG ACATCCTTAA ATCCCTCAAA GACACCGACA TCCAAGTTTC CATTATGATC 
    CCTAACGAAC TCATACAAAA CATCTCCAAA AGCCAATCTC TCTCGGACCA CTGGGTTAAA 
    ACCAATGTCG TCCCTTACTA CTCCGATGTC AAAATCCGAT ATCTCCTCGT CGGGAACGAA 
    ATCCTCACAA ATCCTGACAC GGGCACATGG TTCAACCTTG TACCTGCCAT GCGCCGAATC 
    AAAGCTTCCT TAAAAACCCA CAAGATCACA AAAATCAAAG TCGGCACCCC GTCTGCCTTA 
    AACGTTCTCG AGTCTTCATT CCCACCATCG AATGGCACGT TCCGGTCCGA TATCTCCGGC 
    CCGATAATTA AACCGATGTT GCGATTCTTG GACCGGACCA AATCGTTCTT TTTCATCGAT 
    GTCTACCCTT ATTTCGCCTG GGCCGATAAC CACCAAAACA TCAATTTAGA CTACGCTCTT 
    TTCAAAGCCA AGAACGTAAC ATACACCGAC CCGGGTACAA ACTTAACCTA CACCAACCTC 
    TTAGACCAGA TGTTAGACGC TGTCGCTTTT GCGATGAAAC GGCTCGGGTA TCCGGACGTT 
    CGTATTTTTA TTGCAGAAAC GGGTTGGCCT AACGATGGAG ATATTGACCA AATCGGAGCA 
    AATATTTACA ACTCAGCCAC TTTCAATCGC AATGTGATAA AAAAACTCAC AACAAAACCC 
    GCAATTGGAA CCCCAGCCCG ACCCGGTTGG GTCATACCCA GTATCATCTT CGCCCTGTAT 
    AACGAGAACC AGAAACCGGG TCCGGGTACG GAGCGACATT TCGGATTATT GTACCCAAAT 
    GGGACCAAAA TCTACGAGAT TGATCTCAGT GGAGACACGC CGTTATCAGA GTACACAAAG 
    CCCTTGCCGG CTCCGACCAA TAACGAGCCA TATAAAGGGA AGATATGGTG CATGGTTGCT 
    AAAGGAGTCA ACGAGACTGC AGTGGGAGAT GCGTTATCAT ATGCTTGCTC GCAGGGGAAT 
    AAAACTTGTG ACGCGATCCA GACCGGAAAG GAGTGTTATA AGCCGGATTC GTTGTTTTGG 
    CATGCGAGTT ATGCGTTTAG TTCGTATTGG GCCCAGTTTA AGAAAAGTGG TGGGACCTGC 
    TCCTTCAACG GGTTAGCTAC GATGACGCCT AAGGATCCAA GTTTTGGACA TTGCAAGTTC 
    CCAGGTACAA CTCTTTGA

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

  • PubMed

    The genome of black cottonwood, Populus trichocarpa (Torr. & Gray).
    Science (New York, N.Y.)313(5793)1596-604(2006 Sep)
    Tuskan GA,Difazio S,Jansson S,Bohlmann J,Grigoriev I,Hellsten U,Putnam N,Ralph S,Rombauts S,Salamov A,Schein J,Sterck L,Aerts A,Bhalerao RR,Bhalerao RP,Blaudez D,Boerjan W,Brun A,Brunner A,Busov V,Campbell M,Carlson J,Chalot M,Chapman J,Chen GL,Cooper D,Coutinho PM,Couturier J,Covert S,Cronk Q,Cunningham R,Davis J,Degroeve S,D?jardin A,Depamphilis C,Detter J,Dirks B,Dubchak I,Duplessis S,Ehlting J,Ellis B,Gendler K,Goodstein D,Gribskov M,Grimwood J,Groover A,Gunter L,Hamberger B,Heinze B,Helariutta Y,Henrissat B,Holligan D,Holt R,Huang W,Islam-Faridi N,Jones S,Jones-Rhoades M,Jorgensen R,Joshi C,Kangasj?rvi J,Karlsson J,Kelleher C,Kirkpatrick R,Kirst M,Kohler A,Kalluri U,Larimer F,Leebens-Mack J,Lepl? JC,Locascio P,Lou Y,Lucas S,Martin F,Montanini B,Napoli C,Nelson DR,Nelson C,Nieminen K,Nilsson O,Pereda V,Peter G,Philippe R,Pilate G,Poliakov A,Razumovskaya J,Richardson P,Rinaldi C,Ritland K,Rouz? P,Ryaboy D,Schmutz J,Schrader J,Segerman B,Shin H,Siddiqui A,Sterky F,Terry A,Tsai CJ,Uberbacher E,Unneberg P,Vahala J,Wall K,Wessler S,Yang G,Yin T,Douglas C,Marra M,Sandberg G,Van de Peer Y,Rokhsar D


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