Gene Symbol | LOC100488690 |
Entrez Gene ID | 100488690 |
Full Name | prominin 3 |
Gene Type | protein-coding |
Organism | Xenopus tropicalis(tropical clawed frog) |
ORF » Species Summary » Xenopus tropicalis » LOC100488690 cDNA ORF clone
Gene Symbol | LOC100488690 |
Entrez Gene ID | 100488690 |
Full Name | prominin 3 |
Gene Type | protein-coding |
Organism | Xenopus tropicalis(tropical clawed frog) |
mRNA | Protein | Name |
---|---|---|
XM_012966254.2 | XP_012821708.1 | prominin 3 isoform X1 |
XM_012966256.2 | XP_012821710.1 | prominin 3 isoform X1 |
XM_031904909.1 | XP_031760769.1 | prominin 3 isoform X1 |
XM_031904911.1 | XP_031760771.1 | prominin 3 isoform X1 |
XM_012966253.2 | XP_012821707.1 | prominin 3 isoform X1 |
XM_018095311.1 | XP_017950800.1 | prominin 3 isoform X1 |
XM_018095312.1 | XP_017950801.1 | prominin 3 isoform X2 |
NM_001256290.1 | NP_001243219.1 | prominin 3 |
XM_031904912.1 | XP_031760772.1 | prominin 3 isoform X1 |
XM_031904910.1 | XP_031760770.1 | prominin 3 isoform X1 |
Xenopus tropicalis (tropical clawed frog) | LOC100488690 | NP_001243219.1 |
Gallus gallus (chicken) | LOC423849 | XP_004942263.1 |
Danio rerio (zebrafish) | prom2 | XP_684527.3 |
Xenopus tropicalis (tropical clawed frog) | LOC100495294 | XP_002944338.2 |
Identification of three prominin homologs and characterization of their messenger RNA expression in Xenopus laevis tissues.
Han Z, Papermaster DS
Molecular vision171381-96(2011)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following LOC100488690 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the LOC100488690 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | OXa02987 | |
Clone ID Related Accession (Same CDS sequence) | NM_001256290.1 | |
Accession Version | NM_001256290.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2382bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-12-21 | |
Organism | Xenopus tropicalis(tropical clawed frog) | |
Product | prominin 3 | |
Comment | Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from HQ159404.1. On Jan 16, 2012 this sequence version replaced XM_002940570.1. ##Evidence-Data-START## Transcript exon combination :: HQ159404.1 [ECO:0000332] RNAseq introns :: mixed/partial sample support SAMD00028290, SAMD00028291 [ECO:0000350] ##Evidence-Data-END## |
1 | ATGGAGTTCA CAAACATAAC AACACCAAAC TATAGACCAG AAGCTGACCC AGCTAATGGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001243219.1 |
CDS | 396..2777 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001256290.1 |
1 | ATGGAGTTCA CAAACATAAC AACACCAAAC TATAGACCAG AAGCTGACCC AGCTAATGGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OXa34242 | |
Clone ID Related Accession (Same CDS sequence) | XM_012966254.2 , XM_012966256.2 , XM_012966253.2 , XM_018095311.1 | |
Accession Version | XM_012966254.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2406bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-09-07 | |
Organism | Xenopus tropicalis(tropical clawed frog) | |
Product | prominin 3 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_030683.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Sep 8, 2016 this sequence version replaced XM_012966254.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Xenopus tropicalis Annotation Release 103 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGAGTTCA CAAACATAAC AACACCAAAC TATAGACCAG AAGCTGACCC AGCTAATGGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_012821708.1 |
CDS | 760..3165 |
Translation |
Target ORF information:
Target ORF information:
|
XM_012966254.2 |
1 | ATGGAGTTCA CAAACATAAC AACACCAAAC TATAGACCAG AAGCTGACCC AGCTAATGGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OXa34242 | |
Clone ID Related Accession (Same CDS sequence) | XM_012966254.2 , XM_012966256.2 , XM_012966253.2 , XM_018095311.1 | |
Accession Version | XM_012966256.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2406bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-09-07 | |
Organism | Xenopus tropicalis(tropical clawed frog) | |
Product | prominin 3 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_030683.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Sep 8, 2016 this sequence version replaced XM_012966256.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Xenopus tropicalis Annotation Release 103 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGAGTTCA CAAACATAAC AACACCAAAC TATAGACCAG AAGCTGACCC AGCTAATGGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_012821710.1 |
CDS | 485..2890 |
Translation |
Target ORF information:
Target ORF information:
|
XM_012966256.2 |
1 | ATGGAGTTCA CAAACATAAC AACACCAAAC TATAGACCAG AAGCTGACCC AGCTAATGGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OXa34242 | |
Clone ID Related Accession (Same CDS sequence) | XM_012966254.2 , XM_012966256.2 , XM_012966253.2 , XM_018095311.1 | |
Accession Version | XM_012966253.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2406bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-09-07 | |
Organism | Xenopus tropicalis(tropical clawed frog) | |
Product | prominin 3 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_030683.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Sep 8, 2016 this sequence version replaced XM_012966253.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Xenopus tropicalis Annotation Release 103 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGAGTTCA CAAACATAAC AACACCAAAC TATAGACCAG AAGCTGACCC AGCTAATGGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_012821707.1 |
CDS | 692..3097 |
Translation |
Target ORF information:
Target ORF information:
|
XM_012966253.2 |
1 | ATGGAGTTCA CAAACATAAC AACACCAAAC TATAGACCAG AAGCTGACCC AGCTAATGGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OXa34242 | |
Clone ID Related Accession (Same CDS sequence) | XM_012966254.2 , XM_012966256.2 , XM_012966253.2 , XM_018095311.1 | |
Accession Version | XM_018095311.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2406bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-09-07 | |
Organism | Xenopus tropicalis(tropical clawed frog) | |
Product | prominin 3 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_030683.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Xenopus tropicalis Annotation Release 103 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGAGTTCA CAAACATAAC AACACCAAAC TATAGACCAG AAGCTGACCC AGCTAATGGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_017950800.1 |
CDS | 534..2939 |
Translation |
Target ORF information:
Target ORF information:
|
XM_018095311.1 |
1 | ATGGAGTTCA CAAACATAAC AACACCAAAC TATAGACCAG AAGCTGACCC AGCTAATGGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OXa45348 | |
Clone ID Related Accession (Same CDS sequence) | XM_018095312.1 | |
Accession Version | XM_018095312.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2148bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-09-07 | |
Organism | Xenopus tropicalis(tropical clawed frog) | |
Product | prominin 3 isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_030683.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Xenopus tropicalis Annotation Release 103 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGCCTTTGA CAGGATTTTG TTTTTGCTGC TGCCGATGCT GTGGGAACTG TGGGGGGAAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_017950801.1 |
CDS | 431..2578 |
Translation |
Target ORF information:
Target ORF information:
|
XM_018095312.1 |
1 | ATGCCTTTGA CAGGATTTTG TTTTTGCTGC TGCCGATGCT GTGGGAACTG TGGGGGGAAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OXa61303 | |
Clone ID Related Accession (Same CDS sequence) | XM_031904909.1 , XM_031904911.1 , XM_031904912.1 , XM_031904910.1 | |
Accession Version | XM_031904909.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2406bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-12-17 | |
Organism | Xenopus tropicalis(tropical clawed frog) | |
Product | prominin 3 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_030683.2) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Xenopus tropicalis Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.3 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGAGTTCA CAAACATAAC AACACCAAAC TATAGACCAG AAGCTGACCC AGCTAATGGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_031760769.1 |
CDS | 689..3094 |
Translation |
Target ORF information:
Target ORF information:
|
XM_031904909.1 |
1 | ATGGAGTTCA CAAACATAAC AACACCAAAC TATAGACCAG AAGCTGACCC AGCTAATGGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OXa61303 | |
Clone ID Related Accession (Same CDS sequence) | XM_031904909.1 , XM_031904911.1 , XM_031904912.1 , XM_031904910.1 | |
Accession Version | XM_031904911.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2406bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-12-17 | |
Organism | Xenopus tropicalis(tropical clawed frog) | |
Product | prominin 3 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_030683.2) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Xenopus tropicalis Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.3 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGAGTTCA CAAACATAAC AACACCAAAC TATAGACCAG AAGCTGACCC AGCTAATGGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_031760771.1 |
CDS | 487..2892 |
Translation |
Target ORF information:
Target ORF information:
|
XM_031904911.1 |
1 | ATGGAGTTCA CAAACATAAC AACACCAAAC TATAGACCAG AAGCTGACCC AGCTAATGGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OXa61303 | |
Clone ID Related Accession (Same CDS sequence) | XM_031904909.1 , XM_031904911.1 , XM_031904912.1 , XM_031904910.1 | |
Accession Version | XM_031904912.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2406bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-12-17 | |
Organism | Xenopus tropicalis(tropical clawed frog) | |
Product | prominin 3 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_030683.2) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Xenopus tropicalis Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.3 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGAGTTCA CAAACATAAC AACACCAAAC TATAGACCAG AAGCTGACCC AGCTAATGGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_031760772.1 |
CDS | 486..2891 |
Translation |
Target ORF information:
Target ORF information:
|
XM_031904912.1 |
1 | ATGGAGTTCA CAAACATAAC AACACCAAAC TATAGACCAG AAGCTGACCC AGCTAATGGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OXa61303 | |
Clone ID Related Accession (Same CDS sequence) | XM_031904909.1 , XM_031904911.1 , XM_031904912.1 , XM_031904910.1 | |
Accession Version | XM_031904910.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2406bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-12-17 | |
Organism | Xenopus tropicalis(tropical clawed frog) | |
Product | prominin 3 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_030683.2) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Xenopus tropicalis Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.3 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGAGTTCA CAAACATAAC AACACCAAAC TATAGACCAG AAGCTGACCC AGCTAATGGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_031760770.1 |
CDS | 757..3162 |
Translation |
Target ORF information:
Target ORF information:
|
XM_031904910.1 |
1 | ATGGAGTTCA CAAACATAAC AACACCAAAC TATAGACCAG AAGCTGACCC AGCTAATGGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
Identification of three prominin homologs and characterization of their messenger RNA expression in Xenopus laevis tissues. |