Gene Symbol | CAPS |
Entrez Gene ID | 100514564 |
Full Name | calcyphosine |
Gene Type | protein-coding |
Organism | Sus scrofa(pig) |
ORF » Species Summary » Sus scrofa » CAPS cDNA ORF clone
Gene Symbol | CAPS |
Entrez Gene ID | 100514564 |
Full Name | calcyphosine |
Gene Type | protein-coding |
Organism | Sus scrofa(pig) |
mRNA | Protein | Name |
---|---|---|
NM_001244976.1 | NP_001231905.1 | calcyphosin isoform b |
NM_001244977.1 | NP_001231906.1 | calcyphosin isoform c |
NM_001244975.1 | NP_001231904.1 | calcyphosin isoform a |
XM_005661298.3 | XP_005661355.1 | calcyphosin isoform X1 |
XM_005661298.2 | XP_005661355.1 | calcyphosin isoform X1 |
XM_005661299.2 | XP_005661356.1 | calcyphosin isoform X1 |
XM_005661299.3 | XP_005661356.1 | calcyphosin isoform X1 |
PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences.
Uenishi H, Eguchi-Ogawa T, Shinkai H, Okumura N, Suzuki K, Toki D, Hamasima N, Awata T
Nucleic acids research35(Database issue)D650-3(2007 Jan)
PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries.
Uenishi H, Eguchi T, Suzuki K, Sawazaki T, Toki D, Shinkai H, Okumura N, Hamasima N, Awata T
Nucleic acids research32(Database issue)D484-8(2004 Jan)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following CAPS gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the CAPS cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | OSe05335 | |
Clone ID Related Accession (Same CDS sequence) | NM_001244977.1 | |
Accession Version | NM_001244977.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 444bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2015-10-17 | |
Organism | Sus scrofa(pig) | |
Product | calcyphosin isoform c | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AK237847.1. Transcript Variant: This variant (3) uses an alternate in-frame splice site in the coding region, compared to variant 1. It encodes isoform c, which is shorter than isoform a. ##Evidence-Data-START## Transcript exon combination :: AK237847.1, CJ022540.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA1876824, SAMEA1876838 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. |
1 | ATGGATGCTG TGGACACCAC TATGGAGAAG CTCCGGGCTC AGTGTCTGTC CCGAGGGGCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001231906.1 |
CDS | 80..523 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001244977.1 |
1 | ATGGATGCTG TGGACACCAC TATGGAGAAG CTCCGGGCTC AGTGTCTGTC CCGAGGGGCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OSe30340 | |
Clone ID Related Accession (Same CDS sequence) | NM_001244975.1 | |
Accession Version | NM_001244975.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 570bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2015-10-17 | |
Organism | Sus scrofa(pig) | |
Product | calcyphosin isoform a | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AK234487.1. On or before Oct 13, 2011 this sequence version replaced XM_003123098.1, XM_003123099.1, XM_003123100.1. Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (a). ##Evidence-Data-START## Transcript exon combination :: AK234487.1, BP170079.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA1487420, SAMEA1876824 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. |
1 | ATGGATGCTG TGGACACCAC TATGGAGAAG CTCCGGGCTC AGTGTCTGTC CCGAGGGGCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001231904.1 |
CDS | 105..674 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001244975.1 |
1 | ATGGATGCTG TGGACACCAC TATGGAGAAG CTCCGGGCTC AGTGTCTGTC CCGAGGGGCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OSe30341 | |
Clone ID Related Accession (Same CDS sequence) | NM_001244976.1 | |
Accession Version | NM_001244976.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 504bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2015-10-17 | |
Organism | Sus scrofa(pig) | |
Product | calcyphosin isoform b | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AK231677.1. Transcript Variant: This variant (2) uses an alternate in-frame splice site in the coding region, compared to variant 1. It encodes isoform b, which is shorter than isoform a. ##Evidence-Data-START## Transcript exon combination :: AK231677.1, BP435449.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN02389761, SAMN02389765 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. |
1 | ATGGATGCTG TGGACACCAC TATGGAGAAG CTCCGGGCTC AGTGTCTGTC CCGAGGGGCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001231905.1 |
CDS | 80..583 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001244976.1 |
1 | ATGGATGCTG TGGACACCAC TATGGAGAAG CTCCGGGCTC AGTGTCTGTC CCGAGGGGCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OSe05333 | |
Clone ID Related Accession (Same CDS sequence) | XM_005661298.3 , XM_005661298.2 , XM_005661299.2 , XM_005661299.3 | |
Accession Version | XM_005661298.3 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 570bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2017-05-12 | |
Organism | Sus scrofa(pig) | |
Product | calcyphosin isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_010444.4) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On May 13, 2017 this sequence version replaced XM_005661298.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Sus scrofa Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGATGCTG TGGACACCAC TATGGAGAAG CTCCGGGCTC AGTGTCTGTC CCGAGGGGCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_005661355.1 |
CDS | 164..733 |
Translation |
Target ORF information:
Target ORF information:
|
XM_005661298.3 |
1 | ATGGATGCTG TGGACACCAC TATGGAGAAG CTCCGGGCTC AGTGTCTGTC CCGAGGGGCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OSe05333 | |
Clone ID Related Accession (Same CDS sequence) | XM_005661298.3 , XM_005661298.2 , XM_005661299.2 , XM_005661299.3 | |
Accession Version | XM_005661298.2 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 570bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2015-09-10 | |
Organism | Sus scrofa(Pig) | |
Product | calcyphosin isoform X1 | |
Comment | MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003609608.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Sep 11, 2015 this sequence version replaced XM_005661298.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Sus scrofa Annotation Release 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGATGCTG TGGACACCAC TATGGAGAAG CTCCGGGCTC AGTGTCTGTC CCGAGGGGCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_005661355.1 |
CDS | 108..677 |
Translation |
Target ORF information:
Target ORF information:
|
XM_005661298.2 |
1 | ATGGATGCTG TGGACACCAC TATGGAGAAG CTCCGGGCTC AGTGTCTGTC CCGAGGGGCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OSe05333 | |
Clone ID Related Accession (Same CDS sequence) | XM_005661298.3 , XM_005661298.2 , XM_005661299.2 , XM_005661299.3 | |
Accession Version | XM_005661299.2 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 570bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2015-09-10 | |
Organism | Sus scrofa(Pig) | |
Product | calcyphosin isoform X1 | |
Comment | MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003609608.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Sep 11, 2015 this sequence version replaced XM_005661299.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Sus scrofa Annotation Release 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGATGCTG TGGACACCAC TATGGAGAAG CTCCGGGCTC AGTGTCTGTC CCGAGGGGCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_005661356.1 |
CDS | 108..677 |
Translation |
Target ORF information:
Target ORF information:
|
XM_005661299.2 |
1 | ATGGATGCTG TGGACACCAC TATGGAGAAG CTCCGGGCTC AGTGTCTGTC CCGAGGGGCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OSe05333 | |
Clone ID Related Accession (Same CDS sequence) | XM_005661298.3 , XM_005661298.2 , XM_005661299.2 , XM_005661299.3 | |
Accession Version | XM_005661299.3 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 570bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2017-05-12 | |
Organism | Sus scrofa(pig) | |
Product | calcyphosin isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_010444.4) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On May 13, 2017 this sequence version replaced XM_005661299.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Sus scrofa Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGATGCTG TGGACACCAC TATGGAGAAG CTCCGGGCTC AGTGTCTGTC CCGAGGGGCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_005661356.1 |
CDS | 164..733 |
Translation |
Target ORF information:
Target ORF information:
|
XM_005661299.3 |
1 | ATGGATGCTG TGGACACCAC TATGGAGAAG CTCCGGGCTC AGTGTCTGTC CCGAGGGGCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. |
PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. |