Six5 cDNA ORF clone, Rattus norvegicus(Norway rat)

Gene
Clones
gRNAs

Summary

Gene Symbol	Six5
Entrez Gene ID	308406
Full Name	SIX homeobox 5
General protein information	Preferred Names SIX homeobox 5 Names homeobox protein SIX5 sine oculis-related homeobox 5 homolog
Gene Type	protein-coding
Organism	Rattus norvegicus(Norway rat)
Genome	Chromosome: 1 Map Location: 1q21

mRNA and Protein(s)

mRNA	Protein	Name
NM_001372077.1	NP_001359006.1	homeobox protein SIX5
XM_003748780.4	XP_003748828.2	homeobox protein SIX5
XM_003753221.4	XP_003753269.1	homeobox protein SIX5

Pathways from BioSystems

Homologies

Homo sapiens (human)	SIX5	NP_787071.2
Mus musculus (house mouse)	Six5	NP_035513.1
Rattus norvegicus (Norway rat)	Six5	XP_003748828.1
Pan troglodytes (chimpanzee)	SIX5	XP_512758.2
Bos taurus (cattle)	SIX5	NP_001192695.1
	SIX5	XP_001111437.1
Canis lupus familiaris (dog)	SIX5	XP_005616928.1

Gene Ontology
Bibliography

Related articles in PubMed

Six family genes control the proliferation and differentiation of muscle satellite cells.
Yajima H, Motohashi N, Ono Y, Sato S, Ikeda K, Masuda S, Yada E, Kanesaki H, Miyagoe-Suzuki Y, Takeda S, Kawakami K
Experimental cell research316(17)2932-44(2010 Oct)

Six5 is required for spermatogenic cell survival and spermiogenesis.
Sarkar PS, Paul S, Han J, Reddy S
Human molecular genetics13(14)1421-31(2004 Jul)

Quantitative proteomic identification of six4 as the trex-binding factor in the muscle creatine kinase enhancer.
Himeda CL, Ranish JA, Angello JC, Maire P, Aebersold R, Hauschka SD
Molecular and cellular biology24(5)2132-43(2004 Mar)

Mice deficient in Six5 develop cataracts: implications for myotonic dystrophy.
Klesert TR, Cho DH, Clark JI, Maylie J, Adelman J, Snider L, Yuen EC, Soriano P, Tapscott SJ
Nature genetics25(1)105-9(2000 May)

Heterozygous loss of Six5 in mice is sufficient to cause ocular cataracts.
Sarkar PS, Appukuttan B, Han J, Ito Y, Ai C, Tsai W, Chai Y, Stout JT, Reddy S
Nature genetics25(1)110-4(2000 May)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following Six5 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the Six5 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)
ORa14252	NM_001372077.1 Latest version!	Rattus norvegicus SIX homeobox 5 (Six5), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	14-16	$391.30 $559.00
ORa14252	XM_003753221.4 Latest version!	Rattus norvegicus SIX homeobox 5 (Six5), transcript variant X1, mRNA.	pcDNA3.1-C-(k)DYK or customized vector	TBD	$391.30 $559.00
ORa14252	XM_003748780.4 Latest version!	Rattus norvegicus SIX homeobox 5 (Six5), transcript variant X1, mRNA.	pcDNA3.1-C-(k)DYK or customized vector	TBD	$391.30 $559.00

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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

Six5 ( NM_001372077.1 ) cDNA ORF clone, Rattus norvegicus(Norway rat) -> NP_001359006.1 Rattus norvegicus SIX homeobox 5 (Six5), mRNA.

Price & Availability↑

CloneID	ORa14252
Clone ID Related Accession (Same CDS sequence)	NM_001372077.1 , XM_003748780.4 , XM_003753221.4
Accession Version	NM_001372077.1 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 2163bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2019-08-06
Organism	Rattus norvegicus(Norway rat)
Product	homeobox protein SIX5
Comment	Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AC120692.6. On or before Aug 7, 2019 this sequence version replaced XM_003748780.4, XM_003753221.4. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments. ##Evidence-Data-START## RNAseq introns :: single sample supports all introns SAMD00052296, SAMD00052297 [ECO:0000348] ##Evidence-Data-END## ##RefSeq-Attributes-START## inferred exon combination :: based on alignments, homology ##RefSeq-Attributes-END##

ATGGCTACCT CGCCTGCCGA GCCGAGCGCG GGGCCGGCGG CTCAGGGGGA GGCGGCGGCG 
GCGACCGAGG AAGAGGAGGA AGAAGCGCGC CAGCTTCTGC AGACTCTTCA GGCAGCCGAG 
GGGGAGGCGG CGGCGGCCGG GGCGGGAGAG GGGGCGGCGG CGGATTCTGG GTCCCCGAGC 
GGCCCAGGGT CTCCACGCGA GACCGGGACC GAGGCGCCCA CTGGCCTTCG CTTCTCGCCC 
GAGCAGGTGG CATGCGTGTG CGAGGCGCTG CTGCAGGCGG GCCACGCCGG CCGCTTGAGC 
CGCTTCCTGG GCGCGCTGCC CCCGGCCGAG CGTCTACGTG GCAGCGATCC GGTGCTGCGC 
GCGCGGGCCC TAGTGGCCTT CCAGCGGGGT GAATATGCCG AGCTCTACCA GCTCCTTGAG 
AGCCGCCCTT TCCCCGCCGC CCACCACGCC TTCCTGCAGG ACCTCTACCT GCGCGCGCGC 
TACCACGAGG CCGAGCGGGC CCGTGGCCGT GCGCTGGGCG CGGTGGACAA ATACCGGCTG 
CGCAAGAAGT TCCCTCTGCC CAAGACCATC TGGGATGGCG AGGAGACGGT CTATTGCTTC 
AAGGAGCGCT CGCGAGCAGC GCTCAAGGCC TGCTACCGCG GCAACCGCTA TCCCACGCCA 
GACGAGAAGC GCCGCCTGGC CACGCTCACC GGCCTCTCAC TTACACAGGT CAGCAACTGG 
TTCAAGAACC GGCGACAGCG CGACCGTACT GGGACCGGCG GTGGAGCGCC CTGCAAAAGC 
GAGTCTGACG GGAACCCCAC TACGGAGGAT GAGTCCAGCC GCAGTCCGGA GGACCTGGAG 
AGGGGTGTGG CCTCCGTGGC TGCTGAGGCT CCCACCCAGA GTTCCATCTT CCTGGCAGGG 
GCCACCCCTT CTGCCACATG CCCTGCCTCC TCTTCTATCC TAGTGAACGG GAGCTTCCTG 
GCAGCCAGCA GTCCCCCAGC AGTGCTCCTC AATGGCAGCC CAGTCATCAT CAATAGCTTG 
ACCCTAGGAG AGGGCTCCAG CTTGGGGCCT CTGCTACTCA CAGGGGGAGG GGGTACCCCT 
CAACCACAGC CCAGTCCCCA AGGGGTCAGT GAGACCAAGA CTTCCCTGGT CCTGGACCCT 
CAGACAGGAG AGGTTCGACT GGATGAGGCT CAGTCTGAGG CCCCTGAGGC CAAAGGGGTT 
CATGGAACTA CTCCTGGAGA GGAAATCCCA GGAACCCTGC CCCAAGTAGT CCCAGGCCCC 
CCACCTGCCT CCACCTTCCC TTTGACCCCC GGAGCTGTGC CCTCTGTGGC TGCTCCTCAG 
GTTGTACCAC TCTCCCCTTC TTCTGGGTAC CCAACAGGCC TGAGCCCCAC CTCCCCACTG 
CTGAACTTGC CCCAGGTGGT GCCCACCTCT CAGGTGGTAA CCCTGCCTCA GGCTGTGGGA 
CCTCTCCAGC TGTTAGCAGC TGGACCAGGC AGTCCTGTGA AGGTGGCAGC TACAGCAGGG 
CCTACCAATG TGCACCTGAT AAACTCTAGT GTGGGAGTGA CTGCGCTGCA ACTTCCCTCA 
TCCGCTACTC CAGGAAACTT GCTCCTGGCC AACCCTGTGT CTGGCAGCCC CATTGTCACT 
GGGGTAGCTG TGCAGCAGGG CAGGATCCTC CTCACGGCCA CCTTCCCCAC CCGCATGCTC 
GTCTCCCAGG TCCTGCCTCC TGCTCCCAGT CTAGCCCTGC CCCTGAAGCA AGAGCCAGCT 
ATCACAGTGC CTGAAGGAGC CCTCCCAGTG GGCCCCAGCC CCACCCTCCC AGAGGGTCAC 
ACTCTGGGGC CAGTCTCTAC TCAGCCACTG CCACCTGCTC CTGCTGTCAC CTCTGCCACC 
AGCCTGCCTT TCTCCCCAGA CTCCTCTGGC CTGCTTTCCA GCTTCTCAGC ACCCCTACCT 
GAAGGTCTGA TGCTGTCACC TGCGGCTGTG CCAGTTTGGC CAGCAGGGCT GGAACTGAGC 
ACAGGAGTAG AGGGGCTGGG GACACAGGCC ACCCATACTG TGCTGAGGCT ACCAGACCCT 
GACCACCAGG GGCTGCTCCT GGGGGCCACA GCAGGGACTG AGGTTGACGA GGGCCTAGAA 
GCTGAGGCCA AGGTCCTGAC CCAGCTGCAG TCCGTGCCTG TGGAGGAGCC CTTGGAACTG 
TAA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_001359006.1
CDS	26..2188
Translation	MATSPAEPSAGPAAQGEAAAATEEEEEEARQLLQTLQAAEGEAAAAGAGEGAAADSGSPSGPGSPRETGTEAPTGLRFSPEQVACVCEALLQAGHAGRLSRFLGALPPAERLRGSDPVLRARALVAFQRGEYAELYQLLESRPFPAAHHAFLQDLYLRARYHEAERARGRALGAVDKYRLRKKFPLPKTIWDGEETVYCFKERSRAALKACYRGNRYPTPDEKRRLATLTGLSLTQVSNWFKNRRQRDRTGTGGGAPCKSESDGNPTTEDESSRSPEDLERGVASVAAEAPTQSSIFLAGATPSATCPASSSILVNGSFLAASSPPAVLLNGSPVIINSLTLGEGSSLGPLLLTGGGGTPQPQPSPQGVSETKTSLVLDPQTGEVRLDEAQSEAPEAKGVHGTTPGEEIPGTLPQVVPGPPPASTFPLTPGAVPSVAAPQVVPLSPSSGYPTGLSPTSPLLNLPQVVPTSQVVTLPQAVGPLQLLAAGPGSPVKVAATAGPTNVHLINSSVGVTALQLPSSATPGNLLLANPVSGSPIVTGVAVQQGRILLTATFPTRMLVSQVLPPAPSLALPLKQEPAITVPEGALPVGPSPTLPEGHTLGPVSTQPLPPAPAVTSATSLPFSPDSSGLLSSFSAPLPEGLMLSPAAVPVWPAGLELSTGVEGLGTQATHTVLRLPDPDHQGLLLGATAGTEVDEGLEAEAKVLTQLQSVPVEEPLEL

Target ORF information:

RefSeq Version	NM_001372077.1
Organism	Rattus norvegicus(Norway rat)
Definition	Rattus norvegicus SIX homeobox 5 (Six5), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_001372077.1

ORF Insert Sequence:

ATGGCTACCT CGCCTGCCGA GCCGAGCGCG GGGCCGGCGG CTCAGGGGGA GGCGGCGGCG 
GCGACCGAGG AAGAGGAGGA AGAAGCGCGC CAGCTTCTGC AGACTCTTCA GGCAGCCGAG 
GGGGAGGCGG CGGCGGCCGG GGCGGGAGAG GGGGCGGCGG CGGATTCTGG GTCCCCGAGC 
GGCCCAGGGT CTCCACGCGA GACCGGGACC GAGGCGCCCA CTGGCCTTCG CTTCTCGCCC 
GAGCAGGTGG CATGCGTGTG CGAGGCGCTG CTGCAGGCGG GCCACGCCGG CCGCTTGAGC 
CGCTTCCTGG GCGCGCTGCC CCCGGCCGAG CGTCTACGTG GCAGCGATCC GGTGCTGCGC 
GCGCGGGCCC TAGTGGCCTT CCAGCGGGGT GAATATGCCG AGCTCTACCA GCTCCTTGAG 
AGCCGCCCTT TCCCCGCCGC CCACCACGCC TTCCTGCAGG ACCTCTACCT GCGCGCGCGC 
TACCACGAGG CCGAGCGGGC CCGTGGCCGT GCGCTGGGCG CGGTGGACAA ATACCGGCTG 
CGCAAGAAGT TCCCTCTGCC CAAGACCATC TGGGATGGCG AGGAGACGGT CTATTGCTTC 
AAGGAGCGCT CGCGAGCAGC GCTCAAGGCC TGCTACCGCG GCAACCGCTA TCCCACGCCA 
GACGAGAAGC GCCGCCTGGC CACGCTCACC GGCCTCTCAC TTACACAGGT CAGCAACTGG 
TTCAAGAACC GGCGACAGCG CGACCGTACT GGGACCGGCG GTGGAGCGCC CTGCAAAAGC 
GAGTCTGACG GGAACCCCAC TACGGAGGAT GAGTCCAGCC GCAGTCCGGA GGACCTGGAG 
AGGGGTGTGG CCTCCGTGGC TGCTGAGGCT CCCACCCAGA GTTCCATCTT CCTGGCAGGG 
GCCACCCCTT CTGCCACATG CCCTGCCTCC TCTTCTATCC TAGTGAACGG GAGCTTCCTG 
GCAGCCAGCA GTCCCCCAGC AGTGCTCCTC AATGGCAGCC CAGTCATCAT CAATAGCTTG 
ACCCTAGGAG AGGGCTCCAG CTTGGGGCCT CTGCTACTCA CAGGGGGAGG GGGTACCCCT 
CAACCACAGC CCAGTCCCCA AGGGGTCAGT GAGACCAAGA CTTCCCTGGT CCTGGACCCT 
CAGACAGGAG AGGTTCGACT GGATGAGGCT CAGTCTGAGG CCCCTGAGGC CAAAGGGGTT 
CATGGAACTA CTCCTGGAGA GGAAATCCCA GGAACCCTGC CCCAAGTAGT CCCAGGCCCC 
CCACCTGCCT CCACCTTCCC TTTGACCCCC GGAGCTGTGC CCTCTGTGGC TGCTCCTCAG 
GTTGTACCAC TCTCCCCTTC TTCTGGGTAC CCAACAGGCC TGAGCCCCAC CTCCCCACTG 
CTGAACTTGC CCCAGGTGGT GCCCACCTCT CAGGTGGTAA CCCTGCCTCA GGCTGTGGGA 
CCTCTCCAGC TGTTAGCAGC TGGACCAGGC AGTCCTGTGA AGGTGGCAGC TACAGCAGGG 
CCTACCAATG TGCACCTGAT AAACTCTAGT GTGGGAGTGA CTGCGCTGCA ACTTCCCTCA 
TCCGCTACTC CAGGAAACTT GCTCCTGGCC AACCCTGTGT CTGGCAGCCC CATTGTCACT 
GGGGTAGCTG TGCAGCAGGG CAGGATCCTC CTCACGGCCA CCTTCCCCAC CCGCATGCTC 
GTCTCCCAGG TCCTGCCTCC TGCTCCCAGT CTAGCCCTGC CCCTGAAGCA AGAGCCAGCT 
ATCACAGTGC CTGAAGGAGC CCTCCCAGTG GGCCCCAGCC CCACCCTCCC AGAGGGTCAC 
ACTCTGGGGC CAGTCTCTAC TCAGCCACTG CCACCTGCTC CTGCTGTCAC CTCTGCCACC 
AGCCTGCCTT TCTCCCCAGA CTCCTCTGGC CTGCTTTCCA GCTTCTCAGC ACCCCTACCT 
GAAGGTCTGA TGCTGTCACC TGCGGCTGTG CCAGTTTGGC CAGCAGGGCT GGAACTGAGC 
ACAGGAGTAG AGGGGCTGGG GACACAGGCC ACCCATACTG TGCTGAGGCT ACCAGACCCT 
GACCACCAGG GGCTGCTCCT GGGGGCCACA GCAGGGACTG AGGTTGACGA GGGCCTAGAA 
GCTGAGGCCA AGGTCCTGAC CCAGCTGCAG TCCGTGCCTG TGGAGGAGCC CTTGGAACTG 
TAA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

Six5 ( XM_003748780.4 ) cDNA ORF clone, Rattus norvegicus(Norway rat) -> XP_003748828.2 Rattus norvegicus SIX homeobox 5 (Six5), transcript variant X1, mRNA.

Price & Availability↑

CloneID	ORa14252
Clone ID Related Accession (Same CDS sequence)	NM_001372077.1 , XM_003748780.4 , XM_003753221.4
Accession Version	XM_003748780.4 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 2163bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2016-07-25
Organism	Rattus norvegicus(Norway rat)
Product	homeobox protein SIX5
Comment	Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_005100.4) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Jul 26, 2016 this sequence version replaced XM_003748780.3. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Rattus norvegicus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END##

ATGGCTACCT CGCCTGCCGA GCCGAGCGCG GGGCCGGCGG CTCAGGGGGA GGCGGCGGCG 
GCGACCGAGG AAGAGGAGGA AGAAGCGCGC CAGCTTCTGC AGACTCTTCA GGCAGCCGAG 
GGGGAGGCGG CGGCGGCCGG GGCGGGAGAG GGGGCGGCGG CGGATTCTGG GTCCCCGAGC 
GGCCCAGGGT CTCCACGCGA GACCGGGACC GAGGCGCCCA CTGGCCTTCG CTTCTCGCCC 
GAGCAGGTGG CATGCGTGTG CGAGGCGCTG CTGCAGGCGG GCCACGCCGG CCGCTTGAGC 
CGCTTCCTGG GCGCGCTGCC CCCGGCCGAG CGTCTACGTG GCAGCGATCC GGTGCTGCGC 
GCGCGGGCCC TAGTGGCCTT CCAGCGGGGT GAATATGCCG AGCTCTACCA GCTCCTTGAG 
AGCCGCCCTT TCCCCGCCGC CCACCACGCC TTCCTGCAGG ACCTCTACCT GCGCGCGCGC 
TACCACGAGG CCGAGCGGGC CCGTGGCCGT GCGCTGGGCG CGGTGGACAA ATACCGGCTG 
CGCAAGAAGT TCCCTCTGCC CAAGACCATC TGGGATGGCG AGGAGACGGT CTATTGCTTC 
AAGGAGCGCT CGCGAGCAGC GCTCAAGGCC TGCTACCGCG GCAACCGCTA TCCCACGCCA 
GACGAGAAGC GCCGCCTGGC CACGCTCACC GGCCTCTCAC TTACACAGGT CAGCAACTGG 
TTCAAGAACC GGCGACAGCG CGACCGTACT GGGACCGGCG GTGGAGCGCC CTGCAAAAGC 
GAGTCTGACG GGAACCCCAC TACGGAGGAT GAGTCCAGCC GCAGTCCGGA GGACCTGGAG 
AGGGGTGTGG CCTCCGTGGC TGCTGAGGCT CCCACCCAGA GTTCCATCTT CCTGGCAGGG 
GCCACCCCTT CTGCCACATG CCCTGCCTCC TCTTCTATCC TAGTGAACGG GAGCTTCCTG 
GCAGCCAGCA GTCCCCCAGC AGTGCTCCTC AATGGCAGCC CAGTCATCAT CAATAGCTTG 
ACCCTAGGAG AGGGCTCCAG CTTGGGGCCT CTGCTACTCA CAGGGGGAGG GGGTACCCCT 
CAACCACAGC CCAGTCCCCA AGGGGTCAGT GAGACCAAGA CTTCCCTGGT CCTGGACCCT 
CAGACAGGAG AGGTTCGACT GGATGAGGCT CAGTCTGAGG CCCCTGAGGC CAAAGGGGTT 
CATGGAACTA CTCCTGGAGA GGAAATCCCA GGAACCCTGC CCCAAGTAGT CCCAGGCCCC 
CCACCTGCCT CCACCTTCCC TTTGACCCCC GGAGCTGTGC CCTCTGTGGC TGCTCCTCAG 
GTTGTACCAC TCTCCCCTTC TTCTGGGTAC CCAACAGGCC TGAGCCCCAC CTCCCCACTG 
CTGAACTTGC CCCAGGTGGT GCCCACCTCT CAGGTGGTAA CCCTGCCTCA GGCTGTGGGA 
CCTCTCCAGC TGTTAGCAGC TGGACCAGGC AGTCCTGTGA AGGTGGCAGC TACAGCAGGG 
CCTACCAATG TGCACCTGAT AAACTCTAGT GTGGGAGTGA CTGCGCTGCA ACTTCCCTCA 
TCCGCTACTC CAGGAAACTT GCTCCTGGCC AACCCTGTGT CTGGCAGCCC CATTGTCACT 
GGGGTAGCTG TGCAGCAGGG CAGGATCCTC CTCACGGCCA CCTTCCCCAC CCGCATGCTC 
GTCTCCCAGG TCCTGCCTCC TGCTCCCAGT CTAGCCCTGC CCCTGAAGCA AGAGCCAGCT 
ATCACAGTGC CTGAAGGAGC CCTCCCAGTG GGCCCCAGCC CCACCCTCCC AGAGGGTCAC 
ACTCTGGGGC CAGTCTCTAC TCAGCCACTG CCACCTGCTC CTGCTGTCAC CTCTGCCACC 
AGCCTGCCTT TCTCCCCAGA CTCCTCTGGC CTGCTTTCCA GCTTCTCAGC ACCCCTACCT 
GAAGGTCTGA TGCTGTCACC TGCGGCTGTG CCAGTTTGGC CAGCAGGGCT GGAACTGAGC 
ACAGGAGTAG AGGGGCTGGG GACACAGGCC ACCCATACTG TGCTGAGGCT ACCAGACCCT 
GACCACCAGG GGCTGCTCCT GGGGGCCACA GCAGGGACTG AGGTTGACGA GGGCCTAGAA 
GCTGAGGCCA AGGTCCTGAC CCAGCTGCAG TCCGTGCCTG TGGAGGAGCC CTTGGAACTG 
TAA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	XP_003748828.2
CDS	60..2222
Translation	MATSPAEPSAGPAAQGEAAAATEEEEEEARQLLQTLQAAEGEAAAAGAGEGAAADSGSPSGPGSPRETGTEAPTGLRFSPEQVACVCEALLQAGHAGRLSRFLGALPPAERLRGSDPVLRARALVAFQRGEYAELYQLLESRPFPAAHHAFLQDLYLRARYHEAERARGRALGAVDKYRLRKKFPLPKTIWDGEETVYCFKERSRAALKACYRGNRYPTPDEKRRLATLTGLSLTQVSNWFKNRRQRDRTGTGGGAPCKSESDGNPTTEDESSRSPEDLERGVASVAAEAPTQSSIFLAGATPSATCPASSSILVNGSFLAASSPPAVLLNGSPVIINSLTLGEGSSLGPLLLTGGGGTPQPQPSPQGVSETKTSLVLDPQTGEVRLDEAQSEAPEAKGVHGTTPGEEIPGTLPQVVPGPPPASTFPLTPGAVPSVAAPQVVPLSPSSGYPTGLSPTSPLLNLPQVVPTSQVVTLPQAVGPLQLLAAGPGSPVKVAATAGPTNVHLINSSVGVTALQLPSSATPGNLLLANPVSGSPIVTGVAVQQGRILLTATFPTRMLVSQVLPPAPSLALPLKQEPAITVPEGALPVGPSPTLPEGHTLGPVSTQPLPPAPAVTSATSLPFSPDSSGLLSSFSAPLPEGLMLSPAAVPVWPAGLELSTGVEGLGTQATHTVLRLPDPDHQGLLLGATAGTEVDEGLEAEAKVLTQLQSVPVEEPLEL

Target ORF information:

RefSeq Version	XM_003748780.4
Organism	Rattus norvegicus(Norway rat)
Definition	Rattus norvegicus SIX homeobox 5 (Six5), transcript variant X1, mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

XM_003748780.4

ORF Insert Sequence:

ATGGCTACCT CGCCTGCCGA GCCGAGCGCG GGGCCGGCGG CTCAGGGGGA GGCGGCGGCG 
GCGACCGAGG AAGAGGAGGA AGAAGCGCGC CAGCTTCTGC AGACTCTTCA GGCAGCCGAG 
GGGGAGGCGG CGGCGGCCGG GGCGGGAGAG GGGGCGGCGG CGGATTCTGG GTCCCCGAGC 
GGCCCAGGGT CTCCACGCGA GACCGGGACC GAGGCGCCCA CTGGCCTTCG CTTCTCGCCC 
GAGCAGGTGG CATGCGTGTG CGAGGCGCTG CTGCAGGCGG GCCACGCCGG CCGCTTGAGC 
CGCTTCCTGG GCGCGCTGCC CCCGGCCGAG CGTCTACGTG GCAGCGATCC GGTGCTGCGC 
GCGCGGGCCC TAGTGGCCTT CCAGCGGGGT GAATATGCCG AGCTCTACCA GCTCCTTGAG 
AGCCGCCCTT TCCCCGCCGC CCACCACGCC TTCCTGCAGG ACCTCTACCT GCGCGCGCGC 
TACCACGAGG CCGAGCGGGC CCGTGGCCGT GCGCTGGGCG CGGTGGACAA ATACCGGCTG 
CGCAAGAAGT TCCCTCTGCC CAAGACCATC TGGGATGGCG AGGAGACGGT CTATTGCTTC 
AAGGAGCGCT CGCGAGCAGC GCTCAAGGCC TGCTACCGCG GCAACCGCTA TCCCACGCCA 
GACGAGAAGC GCCGCCTGGC CACGCTCACC GGCCTCTCAC TTACACAGGT CAGCAACTGG 
TTCAAGAACC GGCGACAGCG CGACCGTACT GGGACCGGCG GTGGAGCGCC CTGCAAAAGC 
GAGTCTGACG GGAACCCCAC TACGGAGGAT GAGTCCAGCC GCAGTCCGGA GGACCTGGAG 
AGGGGTGTGG CCTCCGTGGC TGCTGAGGCT CCCACCCAGA GTTCCATCTT CCTGGCAGGG 
GCCACCCCTT CTGCCACATG CCCTGCCTCC TCTTCTATCC TAGTGAACGG GAGCTTCCTG 
GCAGCCAGCA GTCCCCCAGC AGTGCTCCTC AATGGCAGCC CAGTCATCAT CAATAGCTTG 
ACCCTAGGAG AGGGCTCCAG CTTGGGGCCT CTGCTACTCA CAGGGGGAGG GGGTACCCCT 
CAACCACAGC CCAGTCCCCA AGGGGTCAGT GAGACCAAGA CTTCCCTGGT CCTGGACCCT 
CAGACAGGAG AGGTTCGACT GGATGAGGCT CAGTCTGAGG CCCCTGAGGC CAAAGGGGTT 
CATGGAACTA CTCCTGGAGA GGAAATCCCA GGAACCCTGC CCCAAGTAGT CCCAGGCCCC 
CCACCTGCCT CCACCTTCCC TTTGACCCCC GGAGCTGTGC CCTCTGTGGC TGCTCCTCAG 
GTTGTACCAC TCTCCCCTTC TTCTGGGTAC CCAACAGGCC TGAGCCCCAC CTCCCCACTG 
CTGAACTTGC CCCAGGTGGT GCCCACCTCT CAGGTGGTAA CCCTGCCTCA GGCTGTGGGA 
CCTCTCCAGC TGTTAGCAGC TGGACCAGGC AGTCCTGTGA AGGTGGCAGC TACAGCAGGG 
CCTACCAATG TGCACCTGAT AAACTCTAGT GTGGGAGTGA CTGCGCTGCA ACTTCCCTCA 
TCCGCTACTC CAGGAAACTT GCTCCTGGCC AACCCTGTGT CTGGCAGCCC CATTGTCACT 
GGGGTAGCTG TGCAGCAGGG CAGGATCCTC CTCACGGCCA CCTTCCCCAC CCGCATGCTC 
GTCTCCCAGG TCCTGCCTCC TGCTCCCAGT CTAGCCCTGC CCCTGAAGCA AGAGCCAGCT 
ATCACAGTGC CTGAAGGAGC CCTCCCAGTG GGCCCCAGCC CCACCCTCCC AGAGGGTCAC 
ACTCTGGGGC CAGTCTCTAC TCAGCCACTG CCACCTGCTC CTGCTGTCAC CTCTGCCACC 
AGCCTGCCTT TCTCCCCAGA CTCCTCTGGC CTGCTTTCCA GCTTCTCAGC ACCCCTACCT 
GAAGGTCTGA TGCTGTCACC TGCGGCTGTG CCAGTTTGGC CAGCAGGGCT GGAACTGAGC 
ACAGGAGTAG AGGGGCTGGG GACACAGGCC ACCCATACTG TGCTGAGGCT ACCAGACCCT 
GACCACCAGG GGCTGCTCCT GGGGGCCACA GCAGGGACTG AGGTTGACGA GGGCCTAGAA 
GCTGAGGCCA AGGTCCTGAC CCAGCTGCAG TCCGTGCCTG TGGAGGAGCC CTTGGAACTG 
TAA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

Six5 ( XM_003753221.4 ) cDNA ORF clone, Rattus norvegicus(Norway rat) -> XP_003753269.1 Rattus norvegicus SIX homeobox 5 (Six5), transcript variant X1, mRNA.

Price & Availability↑

CloneID	ORa14252
Clone ID Related Accession (Same CDS sequence)	NM_001372077.1 , XM_003748780.4 , XM_003753221.4
Accession Version	XM_003753221.4 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 2163bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2016-07-25
Organism	Rattus norvegicus(Norway rat)
Product	homeobox protein SIX5
Comment	Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (AC_000069.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Jul 26, 2016 this sequence version replaced XM_003753221.3. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Rattus norvegicus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END##

ATGGCTACCT CGCCTGCCGA GCCGAGCGCG GGGCCGGCGG CTCAGGGGGA GGCGGCGGCG 
GCGACCGAGG AAGAGGAGGA AGAAGCGCGC CAGCTTCTGC AGACTCTTCA GGCAGCCGAG 
GGGGAGGCGG CGGCGGCCGG GGCGGGAGAG GGGGCGGCGG CGGATTCTGG GTCCCCGAGC 
GGCCCAGGGT CTCCACGCGA GACCGGGACC GAGGCGCCCA CTGGCCTTCG CTTCTCGCCC 
GAGCAGGTGG CATGCGTGTG CGAGGCGCTG CTGCAGGCGG GCCACGCCGG CCGCTTGAGC 
CGCTTCCTGG GCGCGCTGCC CCCGGCCGAG CGTCTACGTG GCAGCGATCC GGTGCTGCGC 
GCGCGGGCCC TAGTGGCCTT CCAGCGGGGT GAATATGCCG AGCTCTACCA GCTCCTTGAG 
AGCCGCCCTT TCCCCGCCGC CCACCACGCC TTCCTGCAGG ACCTCTACCT GCGCGCGCGC 
TACCACGAGG CCGAGCGGGC CCGTGGCCGT GCGCTGGGCG CGGTGGACAA ATACCGGCTG 
CGCAAGAAGT TCCCTCTGCC CAAGACCATC TGGGATGGCG AGGAGACGGT CTATTGCTTC 
AAGGAGCGCT CGCGAGCAGC GCTCAAGGCC TGCTACCGCG GCAACCGCTA TCCCACGCCA 
GACGAGAAGC GCCGCCTGGC CACGCTCACC GGCCTCTCAC TTACACAGGT CAGCAACTGG 
TTCAAGAACC GGCGACAGCG CGACCGTACT GGGACCGGCG GTGGAGCGCC CTGCAAAAGC 
GAGTCTGACG GGAACCCCAC TACGGAGGAT GAGTCCAGCC GCAGTCCGGA GGACCTGGAG 
AGGGGTGTGG CCTCCGTGGC TGCTGAGGCT CCCACCCAGA GTTCCATCTT CCTGGCAGGG 
GCCACCCCTT CTGCCACATG CCCTGCCTCC TCTTCTATCC TAGTGAACGG GAGCTTCCTG 
GCAGCCAGCA GTCCCCCAGC AGTGCTCCTC AATGGCAGCC CAGTCATCAT CAATAGCTTG 
ACCCTAGGAG AGGGCTCCAG CTTGGGGCCT CTGCTACTCA CAGGGGGAGG GGGTACCCCT 
CAACCACAGC CCAGTCCCCA AGGGGTCAGT GAGACCAAGA CTTCCCTGGT CCTGGACCCT 
CAGACAGGAG AGGTTCGACT GGATGAGGCT CAGTCTGAGG CCCCTGAGGC CAAAGGGGTT 
CATGGAACTA CTCCTGGAGA GGAAATCCCA GGAACCCTGC CCCAAGTAGT CCCAGGCCCC 
CCACCTGCCT CCACCTTCCC TTTGACCCCC GGAGCTGTGC CCTCTGTGGC TGCTCCTCAG 
GTTGTACCAC TCTCCCCTTC TTCTGGGTAC CCAACAGGCC TGAGCCCCAC CTCCCCACTG 
CTGAACTTGC CCCAGGTGGT GCCCACCTCT CAGGTGGTAA CCCTGCCTCA GGCTGTGGGA 
CCTCTCCAGC TGTTAGCAGC TGGACCAGGC AGTCCTGTGA AGGTGGCAGC TACAGCAGGG 
CCTACCAATG TGCACCTGAT AAACTCTAGT GTGGGAGTGA CTGCGCTGCA ACTTCCCTCA 
TCCGCTACTC CAGGAAACTT GCTCCTGGCC AACCCTGTGT CTGGCAGCCC CATTGTCACT 
GGGGTAGCTG TGCAGCAGGG CAGGATCCTC CTCACGGCCA CCTTCCCCAC CCGCATGCTC 
GTCTCCCAGG TCCTGCCTCC TGCTCCCAGT CTAGCCCTGC CCCTGAAGCA AGAGCCAGCT 
ATCACAGTGC CTGAAGGAGC CCTCCCAGTG GGCCCCAGCC CCACCCTCCC AGAGGGTCAC 
ACTCTGGGGC CAGTCTCTAC TCAGCCACTG CCACCTGCTC CTGCTGTCAC CTCTGCCACC 
AGCCTGCCTT TCTCCCCAGA CTCCTCTGGC CTGCTTTCCA GCTTCTCAGC ACCCCTACCT 
GAAGGTCTGA TGCTGTCACC TGCGGCTGTG CCAGTTTGGC CAGCAGGGCT GGAACTGAGC 
ACAGGAGTAG AGGGGCTGGG GACACAGGCC ACCCATACTG TGCTGAGGCT ACCAGACCCT 
GACCACCAGG GGCTGCTCCT GGGGGCCACA GCAGGGACTG AGGTTGACGA GGGCCTAGAA 
GCTGAGGCCA AGGTCCTGAC CCAGCTGCAG TCCGTGCCTG TGGAGGAGCC CTTGGAACTG 
TAA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	XP_003753269.1
CDS	60..2222
Translation	MATSPAEPSAGPAAQGEAAAATEEEEEEARQLLQTLQAAEGEAAAAGAGEGAAADSGSPSGPGSPRETGTEAPTGLRFSPEQVACVCEALLQAGHAGRLSRFLGALPPAERLRGSDPVLRARALVAFQRGEYAELYQLLESRPFPAAHHAFLQDLYLRARYHEAERARGRALGAVDKYRLRKKFPLPKTIWDGEETVYCFKERSRAALKACYRGNRYPTPDEKRRLATLTGLSLTQVSNWFKNRRQRDRTGTGGGAPCKSESDGNPTTEDESSRSPEDLERGVASVAAEAPTQSSIFLAGATPSATCPASSSILVNGSFLAASSPPAVLLNGSPVIINSLTLGEGSSLGPLLLTGGGGTPQPQPSPQGVSETKTSLVLDPQTGEVRLDEAQSEAPEAKGVHGTTPGEEIPGTLPQVVPGPPPASTFPLTPGAVPSVAAPQVVPLSPSSGYPTGLSPTSPLLNLPQVVPTSQVVTLPQAVGPLQLLAAGPGSPVKVAATAGPTNVHLINSSVGVTALQLPSSATPGNLLLANPVSGSPIVTGVAVQQGRILLTATFPTRMLVSQVLPPAPSLALPLKQEPAITVPEGALPVGPSPTLPEGHTLGPVSTQPLPPAPAVTSATSLPFSPDSSGLLSSFSAPLPEGLMLSPAAVPVWPAGLELSTGVEGLGTQATHTVLRLPDPDHQGLLLGATAGTEVDEGLEAEAKVLTQLQSVPVEEPLEL

Target ORF information:

RefSeq Version	XM_003753221.4
Organism	Rattus norvegicus(Norway rat)
Definition	Rattus norvegicus SIX homeobox 5 (Six5), transcript variant X1, mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

XM_003753221.4

ORF Insert Sequence:

ATGGCTACCT CGCCTGCCGA GCCGAGCGCG GGGCCGGCGG CTCAGGGGGA GGCGGCGGCG 
GCGACCGAGG AAGAGGAGGA AGAAGCGCGC CAGCTTCTGC AGACTCTTCA GGCAGCCGAG 
GGGGAGGCGG CGGCGGCCGG GGCGGGAGAG GGGGCGGCGG CGGATTCTGG GTCCCCGAGC 
GGCCCAGGGT CTCCACGCGA GACCGGGACC GAGGCGCCCA CTGGCCTTCG CTTCTCGCCC 
GAGCAGGTGG CATGCGTGTG CGAGGCGCTG CTGCAGGCGG GCCACGCCGG CCGCTTGAGC 
CGCTTCCTGG GCGCGCTGCC CCCGGCCGAG CGTCTACGTG GCAGCGATCC GGTGCTGCGC 
GCGCGGGCCC TAGTGGCCTT CCAGCGGGGT GAATATGCCG AGCTCTACCA GCTCCTTGAG 
AGCCGCCCTT TCCCCGCCGC CCACCACGCC TTCCTGCAGG ACCTCTACCT GCGCGCGCGC 
TACCACGAGG CCGAGCGGGC CCGTGGCCGT GCGCTGGGCG CGGTGGACAA ATACCGGCTG 
CGCAAGAAGT TCCCTCTGCC CAAGACCATC TGGGATGGCG AGGAGACGGT CTATTGCTTC 
AAGGAGCGCT CGCGAGCAGC GCTCAAGGCC TGCTACCGCG GCAACCGCTA TCCCACGCCA 
GACGAGAAGC GCCGCCTGGC CACGCTCACC GGCCTCTCAC TTACACAGGT CAGCAACTGG 
TTCAAGAACC GGCGACAGCG CGACCGTACT GGGACCGGCG GTGGAGCGCC CTGCAAAAGC 
GAGTCTGACG GGAACCCCAC TACGGAGGAT GAGTCCAGCC GCAGTCCGGA GGACCTGGAG 
AGGGGTGTGG CCTCCGTGGC TGCTGAGGCT CCCACCCAGA GTTCCATCTT CCTGGCAGGG 
GCCACCCCTT CTGCCACATG CCCTGCCTCC TCTTCTATCC TAGTGAACGG GAGCTTCCTG 
GCAGCCAGCA GTCCCCCAGC AGTGCTCCTC AATGGCAGCC CAGTCATCAT CAATAGCTTG 
ACCCTAGGAG AGGGCTCCAG CTTGGGGCCT CTGCTACTCA CAGGGGGAGG GGGTACCCCT 
CAACCACAGC CCAGTCCCCA AGGGGTCAGT GAGACCAAGA CTTCCCTGGT CCTGGACCCT 
CAGACAGGAG AGGTTCGACT GGATGAGGCT CAGTCTGAGG CCCCTGAGGC CAAAGGGGTT 
CATGGAACTA CTCCTGGAGA GGAAATCCCA GGAACCCTGC CCCAAGTAGT CCCAGGCCCC 
CCACCTGCCT CCACCTTCCC TTTGACCCCC GGAGCTGTGC CCTCTGTGGC TGCTCCTCAG 
GTTGTACCAC TCTCCCCTTC TTCTGGGTAC CCAACAGGCC TGAGCCCCAC CTCCCCACTG 
CTGAACTTGC CCCAGGTGGT GCCCACCTCT CAGGTGGTAA CCCTGCCTCA GGCTGTGGGA 
CCTCTCCAGC TGTTAGCAGC TGGACCAGGC AGTCCTGTGA AGGTGGCAGC TACAGCAGGG 
CCTACCAATG TGCACCTGAT AAACTCTAGT GTGGGAGTGA CTGCGCTGCA ACTTCCCTCA 
TCCGCTACTC CAGGAAACTT GCTCCTGGCC AACCCTGTGT CTGGCAGCCC CATTGTCACT 
GGGGTAGCTG TGCAGCAGGG CAGGATCCTC CTCACGGCCA CCTTCCCCAC CCGCATGCTC 
GTCTCCCAGG TCCTGCCTCC TGCTCCCAGT CTAGCCCTGC CCCTGAAGCA AGAGCCAGCT 
ATCACAGTGC CTGAAGGAGC CCTCCCAGTG GGCCCCAGCC CCACCCTCCC AGAGGGTCAC 
ACTCTGGGGC CAGTCTCTAC TCAGCCACTG CCACCTGCTC CTGCTGTCAC CTCTGCCACC 
AGCCTGCCTT TCTCCCCAGA CTCCTCTGGC CTGCTTTCCA GCTTCTCAGC ACCCCTACCT 
GAAGGTCTGA TGCTGTCACC TGCGGCTGTG CCAGTTTGGC CAGCAGGGCT GGAACTGAGC 
ACAGGAGTAG AGGGGCTGGG GACACAGGCC ACCCATACTG TGCTGAGGCT ACCAGACCCT 
GACCACCAGG GGCTGCTCCT GGGGGCCACA GCAGGGACTG AGGTTGACGA GGGCCTAGAA 
GCTGAGGCCA AGGTCCTGAC CCAGCTGCAG TCCGTGCCTG TGGAGGAGCC CTTGGAACTG 
TAA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PubMed

Six family genes control the proliferation and differentiation of muscle satellite cells.
Experimental cell research316(17)2932-44(2010 Oct)
Yajima H,Motohashi N,Ono Y,Sato S,Ikeda K,Masuda S,Yada E,Kanesaki H,Miyagoe-Suzuki Y,Takeda S,Kawakami K

Six5 is required for spermatogenic cell survival and spermiogenesis.
Human molecular genetics13(14)1421-31(2004 Jul)
Sarkar PS,Paul S,Han J,Reddy S

Quantitative proteomic identification of six4 as the trex-binding factor in the muscle creatine kinase enhancer.
Molecular and cellular biology24(5)2132-43(2004 Mar)
Himeda CL,Ranish JA,Angello JC,Maire P,Aebersold R,Hauschka SD

Mice deficient in Six5 develop cataracts: implications for myotonic dystrophy.
Nature genetics25(1)105-9(2000 May)
Klesert TR,Cho DH,Clark JI,Maylie J,Adelman J,Snider L,Yuen EC,Soriano P,Tapscott SJ

Heterozygous loss of Six5 in mice is sufficient to cause ocular cataracts.
Nature genetics25(1)110-4(2000 May)
Sarkar PS,Appukuttan B,Han J,Ito Y,Ai C,Tsai W,Chai Y,Stout JT,Reddy S

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Six5 cDNA ORF clone, Rattus norvegicus(Norway rat)

Gene

Clones

gRNAs

Related articles in PubMed

Target ORF information:

Target ORF information:

ORF Insert Sequence:

Target ORF information:

Target ORF information:

ORF Insert Sequence:

Target ORF information:

Target ORF information:

ORF Insert Sequence:

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