Pcdhgc3 cDNA ORF clone, Rattus norvegicus(Norway rat)

Gene
Clones
gRNAs

Summary

Gene Symbol	Pcdhgc3
Entrez Gene ID	116782
Full Name	protocadherin gamma subfamily C, 3
General protein information	Preferred Names protocadherin gamma subfamily C, 3 Names protocadherin gamma-C3
Gene Type	protein-coding
Organism	Rattus norvegicus(Norway rat)
Genome	Chromosome: 18 Map Location: 18p11
Summary	may play a role in cell-cell adhesion during spermatogenesis [RGD, Feb 2006].

mRNA and Protein(s)

mRNA	Protein	Name
NM_053943.1	NP_446395.1	protocadherin gamma-C3

Pathways from BioSystems

Homologies

Homo sapiens (human)	PCDHGC3	NP_002579.2
Pan troglodytes (chimpanzee)	PCDHGC3	NP_001076040.1
Bos taurus (cattle)	PCDHGC3	NP_001107552.1
Gallus gallus (chicken)	PCDHGC3	NP_999839.1
Rattus norvegicus (Norway rat)	Pcdhgc3	NP_446395.1
Mus musculus (house mouse)	Pcdhgc3	NP_291059.1

Gene Ontology
Bibliography

Related articles in PubMed

Functional significance of isoform diversification in the protocadherin gamma gene cluster.
Chen WV, Alvarez FJ, Lefebvre JL, Friedman B, Nwakeze C, Geiman E, Smith C, Thu CA, Tapia JC, Tasic B, Sanes JR, Maniatis T
Neuron75(3)402-9(2012 Aug)

Sequence analysis and expression mapping of the rat clustered protocadherin gene repertoires.
Zou C, Huang W, Ying G, Wu Q
Neuroscience144(2)579-603(2007 Jan)

Comparative genomics and diversifying selection of the clustered vertebrate protocadherin genes.
Wu Q
Genetics169(4)2179-88(2005 Apr)

Interaction with protocadherin-gamma regulates the cell surface expression of protocadherin-alpha.
Murata Y, Hamada S, Morishita H, Mutoh T, Yagi T
The Journal of biological chemistry279(47)49508-16(2004 Nov)

Multiple variable first exons: a mechanism for cell- and tissue-specific gene regulation.
Zhang T, Haws P, Wu Q
Genome research14(1)79-89(2004 Jan)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following Pcdhgc3 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the Pcdhgc3 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)	Select
ORa42227	NM_053943.1 Latest version!	Rattus norvegicus protocadherin gamma subfamily C, 3 (Pcdhgc3), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	12-14	$475.30 $679.00

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** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

Pcdhgc3 ( NM_053943.1 ) cDNA ORF clone, Rattus norvegicus(Norway rat) -> NP_446395.1 Rattus norvegicus protocadherin gamma subfamily C, 3 (Pcdhgc3), mRNA.

Price & Availability↑

CloneID	ORa42227
Clone ID Related Accession (Same CDS sequence)	NM_053943.1
Accession Version	NM_053943.1 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 2805bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2017-10-01
Organism	Rattus norvegicus(Norway rat)
Product	protocadherin gamma-C3
Comment	Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AY574028.1. On Jul 27, 2005 this sequence version replaced XM_341600.2. ##Evidence-Data-START## Transcript exon combination :: AY574028.1, CD371569.1 [ECO:0000332] ##Evidence-Data-END##

ATGGTCGCAG AGGCCCGGAG CAGCGGACTG GTAAGCCCCG GGAGAACGGT GGGAGTTTTG 
CTTCTGCTAG CTGCCTTGAC CGAGGCTTCC ACCATCATTC ACTATGAGAT CCTGGAGGAG 
AGAGAGAAGG GGTTTCCCGT GGGTAACGTG GTCACGGATC TTGGTTTGGA TCTCGGCAGT 
CTGTCGGCCC GCAGGCTCCG GGTGGTGTCC GGAGCTAGCC GTAGGTTCTT TGAGGTGAAC 
TGGGAGACTG GAGAGATGTT CGTCAACGAT CGACTGGACC GAGAGGAGCT GTGTGGGACG 
CTGCCCTCCT GCACTGTAAC TCTGGAGTTG GTGGTAGAGA ACCCGCTGGA GCTGTTCAGC 
GCGGAAGTGG TGGTCCAGGA CATCAACGAC AACAATCCCT CTTTCCCCAC CGCGGAAATG 
AAATTGGAGA TTAGCGAGGC CATGGCGCCG GGGACGCGCT TTCCGCTCGA GAGCGCGCAC 
GATCCCGATG TGGGAAGCAA CTCTTTACAA ACCTATGAGC TGAGCCACAA CGAGTACTTT 
GCGCTCCGCG TGCAGACTCG AGAGGACGGC ACGAAATACG CGGAGCTGGT CCTGGAGCGC 
GCCCTAGATT GGGAACGGGA GCCAAGTGTC CAGTTGGTAC TGACCGCACT TGATGGAGGA 
ACCCCAGCTC GCTCCGCCAC CCTTCCAATT CGTATCACAG TGCTGGACGC GAATGACAAT 
GCTCCTGCCT TCAATCAGTC TTTGTATAGG GCGCGCGTCC GGGAGGATGC ACCCCCAGGC 
ACGCGCGTCG CCCAGGTTCG TGCAACTGAC CTGGATGAGG GCCTCAATGG AGAAATCGTT 
TACTCCTTCG GCAGCCACAA TCGTGCTGGG GTGCGGGAAC TATTCGCTTT AGACCTCGTA 
ACCGGGGTGC TGACAATCAA GGGTCGCCTG GACTTTGAAG ACACCAAACT CCATGAGATT 
TACATCCAGG CCAAAGACAA AGGTGCCAAT CCGGAAGGAG CGCATTGCAA AGTACTGGTA 
GAGGTTGTGG ACGTTAATGA CAATGCCCCG GAGATCACAG TCACCTCTGT ATACAGCCCA 
GTCCCTGAGG ATGCTCCTCT GGGGACTGTC ATTGCTTTGC TCAGTGTGAC TGATCTGGAT 
GCTGGAGAGA ACGGGCAGGT GACCTGCGAG GTTCCCCCGG GTCTCCCCTT CAGCCTGACT 
TCTTCCCTCA AGAATTACTT CACTTTGAAA ACCAGTGCAG CCCTGGATCG TGAGACCGTG 
CCCGAATACA ATCTCAGTAT CACAGCTCGA GACTCGGGAA CTCCCTCTCT CTCAGCTCTT 
ACAACAGTCA GGGTCCAAGT GTCCGATATC AACGACAATC CTCCTCAGTC ATCCCAATCC 
TCCTACGATG TGTATGTGGA GGAAAATAAC CTACCCGGAG TTCCTATATT AAACCTAAGT 
GTCTGGGACC CCGACGCCCC GCCCAATGCC CGCCTTTCTT TCTTTCTCTT GGAACCCGGA 
GCGGAAACTG GTCTCGTAGG TCGCTATTTC ACAATAAATC GTGACAATGG AATCTTGACA 
ACCTTAGTAC CCCTGGACTA TGAGGATCAG AGAGAGTTCC AGCTAACCGC TCATATAAAC 
GACGGAGGTA CCCCGGTTTT GGCCACCAAC ATCAGCGTGA ACATATTTGT TACTGACCGC 
AATGACAACG CCCCCCAGGT CCTGTATCCC CGGCCTGGCC AGAGTTCAGT GGAGGTGCTG 
CCTCGAGGTA CAGCGGCGGG CCACGTGGTC TCACGGGTGG TAGGCTGGGA CGCAGATGCA 
GGGCACAATG CCTGGCTCTC CTACAGCCTC ATGGGAGCCC CCAACCAGAG CCTTTTTGCC 
GTGGGGCTTC ACACGGGTCA GATCAGCACT GCCCGCCCAA TCCAGGACAC AGATTCACCA 
AGACAGATTC TCACAGTCTT GATCTCAGAC AATGGAGAAC CATTGCTCTC CACCACCGCC 
ACCCTGACTG TGTCAGTAAC TGAGGAGTCT CCGGAAGCCC GGGCCGAGTT CCCTTCTGGC 
TCAGCTCCCC GAGAACAGAA CAAAAATCTC ACCTTTTATC TACTTCTTTC TCTAATCTTA 
GTCTCTGTGG GATTCGCAGT TACAGTGTTG GGAGTGATCA TATTCAAAGT TTACAAGTGG 
AAGCGGTCTA GGGACCTCTA CCGAGCCCCA GTGAGCTCCC TGTACCGAAC CCCAGTGTCC 
TCCTTGCACG CAGACGCGGT GCGAGGAGGC CTAATGCCGC CGCACCTGTA CCATCAGGTG 
TACCTCACCA CGGACTCTCG CCGCAGCGAC CCACTGCTGA AGAAGCCTGG TGCGGCCAGC 
CCACTGGCCA GCCGCCAGAA CACGCTGCGA AGTTGTGATC CCGTGTTCTA TAGACAGGTG 
TTGGGTGCAG AGAGCGCCCC CCCTGGACAG CAAGCCCCGC CCAACACTGA CTGGCGTTTC 
TCTCAAGCCC AGAGACCCGG CACGAGCGGA TCCCAAAATG GGGATGAAAC CGGCACCTGG 
CCCAACAACC AGTTCGATAC AGAGATGCTG CAAGCCATGA TCTTGGCCTC TGCCAGTGAA 
GCCGCTGATG GGAGCTCCAC TCTGGGAGGG GGCACTGGCA CTATGGGTTT GAGCGCTCGA 
TATGGACCCC AGTTTACCCT GCAGCACGTG CCTGACTACC GCCAGAACGT GTACATCCCT 
GGCAGCAATG CCACACTGAC CAACGCAGCT GGCAAACGAG ATGGCAAGGC TCCGGCAGGC 
GGCAATGGCA ACAAGAAGAA GTCGGGCAAG AAAGAGAAGA AGTAA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_446395.1
CDS	58..2862
Translation	MVAEARSSGLVSPGRTVGVLLLLAALTEASTIIHYEILEEREKGFPVGNVVTDLGLDLGSLSARRLRVVSGASRRFFEVNWETGEMFVNDRLDREELCGTLPSCTVTLELVVENPLELFSAEVVVQDINDNNPSFPTAEMKLEISEAMAPGTRFPLESAHDPDVGSNSLQTYELSHNEYFALRVQTREDGTKYAELVLERALDWEREPSVQLVLTALDGGTPARSATLPIRITVLDANDNAPAFNQSLYRARVREDAPPGTRVAQVRATDLDEGLNGEIVYSFGSHNRAGVRELFALDLVTGVLTIKGRLDFEDTKLHEIYIQAKDKGANPEGAHCKVLVEVVDVNDNAPEITVTSVYSPVPEDAPLGTVIALLSVTDLDAGENGQVTCEVPPGLPFSLTSSLKNYFTLKTSAALDRETVPEYNLSITARDSGTPSLSALTTVRVQVSDINDNPPQSSQSSYDVYVEENNLPGVPILNLSVWDPDAPPNARLSFFLLEPGAETGLVGRYFTINRDNGILTTLVPLDYEDQREFQLTAHINDGGTPVLATNISVNIFVTDRNDNAPQVLYPRPGQSSVEVLPRGTAAGHVVSRVVGWDADAGHNAWLSYSLMGAPNQSLFAVGLHTGQISTARPIQDTDSPRQILTVLISDNGEPLLSTTATLTVSVTEESPEARAEFPSGSAPREQNKNLTFYLLLSLILVSVGFAVTVLGVIIFKVYKWKRSRDLYRAPVSSLYRTPVSSLHADAVRGGLMPPHLYHQVYLTTDSRRSDPLLKKPGAASPLASRQNTLRSCDPVFYRQVLGAESAPPGQQAPPNTDWRFSQAQRPGTSGSQNGDETGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGTGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK

Target ORF information:

RefSeq Version	NM_053943.1
Organism	Rattus norvegicus(Norway rat)
Definition	Rattus norvegicus protocadherin gamma subfamily C, 3 (Pcdhgc3), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_053943.1

ORF Insert Sequence:

ATGGTCGCAG AGGCCCGGAG CAGCGGACTG GTAAGCCCCG GGAGAACGGT GGGAGTTTTG 
CTTCTGCTAG CTGCCTTGAC CGAGGCTTCC ACCATCATTC ACTATGAGAT CCTGGAGGAG 
AGAGAGAAGG GGTTTCCCGT GGGTAACGTG GTCACGGATC TTGGTTTGGA TCTCGGCAGT 
CTGTCGGCCC GCAGGCTCCG GGTGGTGTCC GGAGCTAGCC GTAGGTTCTT TGAGGTGAAC 
TGGGAGACTG GAGAGATGTT CGTCAACGAT CGACTGGACC GAGAGGAGCT GTGTGGGACG 
CTGCCCTCCT GCACTGTAAC TCTGGAGTTG GTGGTAGAGA ACCCGCTGGA GCTGTTCAGC 
GCGGAAGTGG TGGTCCAGGA CATCAACGAC AACAATCCCT CTTTCCCCAC CGCGGAAATG 
AAATTGGAGA TTAGCGAGGC CATGGCGCCG GGGACGCGCT TTCCGCTCGA GAGCGCGCAC 
GATCCCGATG TGGGAAGCAA CTCTTTACAA ACCTATGAGC TGAGCCACAA CGAGTACTTT 
GCGCTCCGCG TGCAGACTCG AGAGGACGGC ACGAAATACG CGGAGCTGGT CCTGGAGCGC 
GCCCTAGATT GGGAACGGGA GCCAAGTGTC CAGTTGGTAC TGACCGCACT TGATGGAGGA 
ACCCCAGCTC GCTCCGCCAC CCTTCCAATT CGTATCACAG TGCTGGACGC GAATGACAAT 
GCTCCTGCCT TCAATCAGTC TTTGTATAGG GCGCGCGTCC GGGAGGATGC ACCCCCAGGC 
ACGCGCGTCG CCCAGGTTCG TGCAACTGAC CTGGATGAGG GCCTCAATGG AGAAATCGTT 
TACTCCTTCG GCAGCCACAA TCGTGCTGGG GTGCGGGAAC TATTCGCTTT AGACCTCGTA 
ACCGGGGTGC TGACAATCAA GGGTCGCCTG GACTTTGAAG ACACCAAACT CCATGAGATT 
TACATCCAGG CCAAAGACAA AGGTGCCAAT CCGGAAGGAG CGCATTGCAA AGTACTGGTA 
GAGGTTGTGG ACGTTAATGA CAATGCCCCG GAGATCACAG TCACCTCTGT ATACAGCCCA 
GTCCCTGAGG ATGCTCCTCT GGGGACTGTC ATTGCTTTGC TCAGTGTGAC TGATCTGGAT 
GCTGGAGAGA ACGGGCAGGT GACCTGCGAG GTTCCCCCGG GTCTCCCCTT CAGCCTGACT 
TCTTCCCTCA AGAATTACTT CACTTTGAAA ACCAGTGCAG CCCTGGATCG TGAGACCGTG 
CCCGAATACA ATCTCAGTAT CACAGCTCGA GACTCGGGAA CTCCCTCTCT CTCAGCTCTT 
ACAACAGTCA GGGTCCAAGT GTCCGATATC AACGACAATC CTCCTCAGTC ATCCCAATCC 
TCCTACGATG TGTATGTGGA GGAAAATAAC CTACCCGGAG TTCCTATATT AAACCTAAGT 
GTCTGGGACC CCGACGCCCC GCCCAATGCC CGCCTTTCTT TCTTTCTCTT GGAACCCGGA 
GCGGAAACTG GTCTCGTAGG TCGCTATTTC ACAATAAATC GTGACAATGG AATCTTGACA 
ACCTTAGTAC CCCTGGACTA TGAGGATCAG AGAGAGTTCC AGCTAACCGC TCATATAAAC 
GACGGAGGTA CCCCGGTTTT GGCCACCAAC ATCAGCGTGA ACATATTTGT TACTGACCGC 
AATGACAACG CCCCCCAGGT CCTGTATCCC CGGCCTGGCC AGAGTTCAGT GGAGGTGCTG 
CCTCGAGGTA CAGCGGCGGG CCACGTGGTC TCACGGGTGG TAGGCTGGGA CGCAGATGCA 
GGGCACAATG CCTGGCTCTC CTACAGCCTC ATGGGAGCCC CCAACCAGAG CCTTTTTGCC 
GTGGGGCTTC ACACGGGTCA GATCAGCACT GCCCGCCCAA TCCAGGACAC AGATTCACCA 
AGACAGATTC TCACAGTCTT GATCTCAGAC AATGGAGAAC CATTGCTCTC CACCACCGCC 
ACCCTGACTG TGTCAGTAAC TGAGGAGTCT CCGGAAGCCC GGGCCGAGTT CCCTTCTGGC 
TCAGCTCCCC GAGAACAGAA CAAAAATCTC ACCTTTTATC TACTTCTTTC TCTAATCTTA 
GTCTCTGTGG GATTCGCAGT TACAGTGTTG GGAGTGATCA TATTCAAAGT TTACAAGTGG 
AAGCGGTCTA GGGACCTCTA CCGAGCCCCA GTGAGCTCCC TGTACCGAAC CCCAGTGTCC 
TCCTTGCACG CAGACGCGGT GCGAGGAGGC CTAATGCCGC CGCACCTGTA CCATCAGGTG 
TACCTCACCA CGGACTCTCG CCGCAGCGAC CCACTGCTGA AGAAGCCTGG TGCGGCCAGC 
CCACTGGCCA GCCGCCAGAA CACGCTGCGA AGTTGTGATC CCGTGTTCTA TAGACAGGTG 
TTGGGTGCAG AGAGCGCCCC CCCTGGACAG CAAGCCCCGC CCAACACTGA CTGGCGTTTC 
TCTCAAGCCC AGAGACCCGG CACGAGCGGA TCCCAAAATG GGGATGAAAC CGGCACCTGG 
CCCAACAACC AGTTCGATAC AGAGATGCTG CAAGCCATGA TCTTGGCCTC TGCCAGTGAA 
GCCGCTGATG GGAGCTCCAC TCTGGGAGGG GGCACTGGCA CTATGGGTTT GAGCGCTCGA 
TATGGACCCC AGTTTACCCT GCAGCACGTG CCTGACTACC GCCAGAACGT GTACATCCCT 
GGCAGCAATG CCACACTGAC CAACGCAGCT GGCAAACGAG ATGGCAAGGC TCCGGCAGGC 
GGCAATGGCA ACAAGAAGAA GTCGGGCAAG AAAGAGAAGA AGTAA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PubMed

Functional significance of isoform diversification in the protocadherin gamma gene cluster.
Neuron75(3)402-9(2012 Aug)
Chen WV,Alvarez FJ,Lefebvre JL,Friedman B,Nwakeze C,Geiman E,Smith C,Thu CA,Tapia JC,Tasic B,Sanes JR,Maniatis T

Sequence analysis and expression mapping of the rat clustered protocadherin gene repertoires.
Neuroscience144(2)579-603(2007 Jan)
Zou C,Huang W,Ying G,Wu Q

Comparative genomics and diversifying selection of the clustered vertebrate protocadherin genes.
Genetics169(4)2179-88(2005 Apr)
Wu Q

Interaction with protocadherin-gamma regulates the cell surface expression of protocadherin-alpha.
The Journal of biological chemistry279(47)49508-16(2004 Nov)
Murata Y,Hamada S,Morishita H,Mutoh T,Yagi T

Multiple variable first exons: a mechanism for cell- and tissue-specific gene regulation.
Genome research14(1)79-89(2004 Jan)
Zhang T,Haws P,Wu Q

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Pcdhgc3 cDNA ORF clone, Rattus norvegicus(Norway rat)

Gene

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gRNAs

Related articles in PubMed

Target ORF information:

Target ORF information:

ORF Insert Sequence:

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