Pcdha12 cDNA ORF clone, Rattus norvegicus(Norway rat)

Gene
Clones
gRNAs

Summary

Gene Symbol	Pcdha12
Entrez Gene ID	116779
Full Name	protocadherin alpha 12
Synonyms	rCNRv12
General protein information	Preferred Names protocadherin alpha 12 Names protocadherin alpha 12
Gene Type	protein-coding
Organism	Rattus norvegicus(Norway rat)
Genome	Chromosome: 18 Map Location: 18p11
Summary	member of the cadherin superfamily of cell adhesion molecules; may play a role in spermatogenesis [RGD, Feb 2006].

mRNA and Protein(s)

mRNA	Protein	Name
NM_053940.1	NP_446392.1	protocadherin alpha 12 precursor

Pathways from BioSystems

Homologies

Homo sapiens (human)	PCDHA11	NP_061725.1
Rattus norvegicus (Norway rat)	Pcdha12	NP_446392.1
Mus musculus (house mouse)	Pcdha11	NP_034090.1
Pan troglodytes (chimpanzee)	PCDHA11	NP_001076057.1

Gene Ontology
Bibliography

Related articles in PubMed

Sequence analysis and expression mapping of the rat clustered protocadherin gene repertoires.
Zou C, Huang W, Ying G, Wu Q
Neuroscience144(2)579-603(2007 Jan)

Comparative genomics and diversifying selection of the clustered vertebrate protocadherin genes.
Wu Q
Genetics169(4)2179-88(2005 Apr)

Interaction with protocadherin-gamma regulates the cell surface expression of protocadherin-alpha.
Murata Y, Hamada S, Morishita H, Mutoh T, Yagi T
The Journal of biological chemistry279(47)49508-16(2004 Nov)

Genomic sequence and organization of the family of CNR/Pcdhalpha genes in rat.
Yanase H, Sugino H, Yagi T
Genomics83(4)717-26(2004 Apr)

Multiple variable first exons: a mechanism for cell- and tissue-specific gene regulation.
Zhang T, Haws P, Wu Q
Genome research14(1)79-89(2004 Jan)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following Pcdha12 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the Pcdha12 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)	Select
ORa11118	NM_053940.1 Latest version!	Rattus norvegicus protocadherin alpha 12 (Pcdha12), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	12-14	$559.30 $799.00

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** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

Pcdha12 ( NM_053940.1 ) cDNA ORF clone, Rattus norvegicus(Norway rat) -> NP_446392.1 Rattus norvegicus protocadherin alpha 12 (Pcdha12), mRNA.

Price & Availability↑

CloneID	ORa11118
Clone ID Related Accession (Same CDS sequence)	NM_053940.1
Accession Version	NM_053940.1 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 2853bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2017-09-30
Organism	Rattus norvegicus(Norway rat)
Product	protocadherin alpha 12 precursor
Comment	Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AB113395.1. ##Evidence-Data-START## Transcript exon combination :: AB113395.1, AY573974.1 [ECO:0000332] ##Evidence-Data-END##

ATGTTAGGTT TTCAGAGAAG GGGATCCTGC ACTCCGCCAC CTCTGCGCTG GTTACTTCTC 
CTCACAGCCT GGGAGATAGG GAGCGGCCAG CTCCACTACT CCATCCCTGA GGAGGCCAAA 
CACGGCACCT TCGTGGGCCG CATCGCCCAG GACCTGGGGC TGGAGCTGAC AGAGCTGGTG 
CCCCGTCTGT TCAGGGTGGC GTCCAAGGAC CGCGGAGACC TTCTGGAGGT AAATCTGCAG 
AATGGCATTT TGTTTGTGAA TTCTCGGATC GACCGGGAGG AGCTGTGCGG GAGGAGCGCG 
GAGTGCAACA TCCACCTGGA GGTGATCGTG GACAGGCCGC TGCAGGTTTT CCACGTGGAG 
GTGGAGGTGA GGGACATTAA TGACAACCCG CCAATGTTTC CTCTTAGAGA ACAAAGGCTG 
CTGATTTATG AATCCAAGCA ACCGGACTCA CGTTTTCCGC TAGAGGGAGC ATCTGATGCG 
GACATAGGGG AGAACGCTGT ATTGGTCTAC AGATTAAGTC AAAACGAGTA TTTTTCTTTA 
GAATCATCAA CCAATAGTAA GCAGATTAAA CGACCGTCAC TTATATTAAA GAAGACTCTA 
GATCGGGAGA AAACTCGGGA ACTTAATTTG CTATTAACAG CCACAGATGG CGGAAAACCA 
GAGCTCACCG GTACAGTTCA GCTTTGGGTT CACGTCTTGG ATGTTAACGA CAATGATCCG 
GTGTTCGATC ATTTAGAATA CAAGGTAAGA GTAATGGAAA ATGCTGCCAA GGAAACTCTT 
GTCATAAAGT TGAACGCCAC GGATCTAGAC GAAGGTGTAA ACGGGCAATT GGTATACTCT 
TTGATGTCCA TTAAGCCCAC TGGGAGGCAC TTATTTACTC TAGATGAAAA CAGCGGAGAA 
TTGAGGGTCA ACGGCACCTT AGACTACGAA GAGAACAAGT CTTATGAAAT AGAAGTGCTG 
GCCACGGATA AAGGAGCACC TCCAATGGTA GGTCACTGTG TAGTCTTCGT AGAAATCTTA 
GACACCAATG ACAACTCCCC TGAAGTGACA CTAACTTCGC TGTCCCTCCC AGTAAGAGAA 
GATGCGCAGC CAAATACAGT GATTGCTTTA ATTAGCATAT CCGACCTAGA TTCTGGTATC 
AATGGCCAAG TGACCTGCTC TCTTACACCC AATGTCCCCT TCAAGATCGT ATCCACCTTT 
AAAAACTATT ATTCTCTGGT ATTGGATAGC AGTCTAGACC GCGAGACGGT GTCAACCTAT 
GATTTGGTTG TGACAGCGCG GGATGGGGGT TCACCTTCAC TGTGTGCCAC CGCCAGCGTG 
TCTGTGGAGG TGGCTGACGT GAACGACAAT GCACCTGCGT TCGCGCAGCC CGAACACACG 
GTGTTCGTGA AGGAGAACAA CCCGCCTGGC GCGCACATCT TCACGGTGTC TGCGGAGGAT 
GCAGACGCGC AGGAGAACGC GCTGGTGTCC TACTCACTGG TGGAGCGGCG GGTGGGCGAG 
CGCTTGCTGT CGAGCTATGT CTCTGTGCAC GCTGAGAGCG GCAAGGTGTT CGCGCTGCAG 
CCTCTGGACC ATGAGGAGCT GGAGCTGCTG CAGTTCCAGG TGAGCGCTCA GGACGCTGGT 
GTGCCTGCCC TGGGCAGCAA TGTGACTCTG CAGGTGTTTG TGCTGGATGA AAACGACAAC 
GCACCCATGC TTCTGCCCCA CGGAGCTGTC GGACCTGGCG GGACAGTGAG CGAGCTTGTG 
CCTAGGTCGG TGGGTTCGGG CCATGTGGTC ACCAAGGTTC GCGCAGTGGA TGCGGACTCT 
GGTTACAATG CTTGGCTGTC ATACGAACTA CAATTGGGAA CAGGTGGAGT ACGCAGCCCC 
TTCCGTGTGG GTCTGTACAC GGGTGAGATC AGCACGACAC GTGCCCTGGA TGAGGTGGAC 
GCTCCTCGAC AGACTCTATT GGTGCTGGTG AAGGACCATG GTGAGCCAGC ACTGACAGCC 
ACTGCAACTG TATTAGTGTC TCTTGTGGAA AACAGTCAAG CTCCAAAGTC CTTTTCACAG 
GCATCAGGGC GTGCTTCAGC CCCAGACGCA TCGCTGGTGG ATGTCAACGT GTATTTGATC 
ATTGCCATCT GTGCAGTGTC CAGTCTGTTG GTGCTCACGC TGCTGCTGTA TACAGCGCTG 
CGCTGCTCGG CTTTGCCTAT GGTCAATGAG GCCGCTGGGG GGCCTGGGAA ACCCATGCTG 
GTGTGCTCCA GTGCGGTGGG GAGCTGGTCC TACTCACAGC AGAGGCGGCA GCGGGTGTGC 
TCTGGGGAAG TTCTTCCCAA GACAGACCTC ATGGCCTTTA GCCCCAGCCT ACCTCCCAAC 
ATGGATAGAG ATGAAAGGGA AAGGCAGGAG TCAGAATCAA ATCACCCTGG ACAGCCCCGA 
CAGCCCAACC CTGACTGGCG CTACTCTGCC TCGCTAAGAG CCGGCATGCA CAGCTCTGTG 
CACCTGGAGG AGGCTGGCAT TCTACGGGCT GGTCCAGGAG GGCCTGATCA ACAGTGGCCA 
ACAGTATCCA GTGCAACACC AGAACCAGAG GCAGGAGAGG TGTCCCCTCC AGTGGGCGCT 
GGTGTCAACA GCAACAGCTG GACCTTTAAA TACGGACCCG GCAACCCCAA ACAGCCCGGT 
CCCGGTGAGT TGCCAGACAA ATTCATTATC CCAGGATCTC CTGCAATCAT CTCCATCCGG 
CAGGAGTCTG CTAACAACCA AATTGACAAA AGCGATTTTA TAACCTTCGG CAAAAAGGAG 
GAGACCAAGA AAAAGAAGAA AAAGAAGAAG GGTAACAAGA CCCAGGAGAA AAAAGAGAAA 
GGGAACAGCA CGACGGACAA CAGTGACCAG TGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_446392.1
CDS	1..2853
Translation	MLGFQRRGSCTPPPLRWLLLLTAWEIGSGQLHYSIPEEAKHGTFVGRIAQDLGLELTELVPRLFRVASKDRGDLLEVNLQNGILFVNSRIDREELCGRSAECNIHLEVIVDRPLQVFHVEVEVRDINDNPPMFPLREQRLLIYESKQPDSRFPLEGASDADIGENAVLVYRLSQNEYFSLESSTNSKQIKRPSLILKKTLDREKTRELNLLLTATDGGKPELTGTVQLWVHVLDVNDNDPVFDHLEYKVRVMENAAKETLVIKLNATDLDEGVNGQLVYSLMSIKPTGRHLFTLDENSGELRVNGTLDYEENKSYEIEVLATDKGAPPMVGHCVVFVEILDTNDNSPEVTLTSLSLPVREDAQPNTVIALISISDLDSGINGQVTCSLTPNVPFKIVSTFKNYYSLVLDSSLDRETVSTYDLVVTARDGGSPSLCATASVSVEVADVNDNAPAFAQPEHTVFVKENNPPGAHIFTVSAEDADAQENALVSYSLVERRVGERLLSSYVSVHAESGKVFALQPLDHEELELLQFQVSAQDAGVPALGSNVTLQVFVLDENDNAPMLLPHGAVGPGGTVSELVPRSVGSGHVVTKVRAVDADSGYNAWLSYELQLGTGGVRSPFRVGLYTGEISTTRALDEVDAPRQTLLVLVKDHGEPALTATATVLVSLVENSQAPKSFSQASGRASAPDASLVDVNVYLIIAICAVSSLLVLTLLLYTALRCSALPMVNEAAGGPGKPMLVCSSAVGSWSYSQQRRQRVCSGEVLPKTDLMAFSPSLPPNMDRDERERQESESNHPGQPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWPTVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQPGPGELPDKFIIPGSPAIISIRQESANNQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ

Target ORF information:

RefSeq Version	NM_053940.1
Organism	Rattus norvegicus(Norway rat)
Definition	Rattus norvegicus protocadherin alpha 12 (Pcdha12), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_053940.1

ORF Insert Sequence:

ATGTTAGGTT TTCAGAGAAG GGGATCCTGC ACTCCGCCAC CTCTGCGCTG GTTACTTCTC 
CTCACAGCCT GGGAGATAGG GAGCGGCCAG CTCCACTACT CCATCCCTGA GGAGGCCAAA 
CACGGCACCT TCGTGGGCCG CATCGCCCAG GACCTGGGGC TGGAGCTGAC AGAGCTGGTG 
CCCCGTCTGT TCAGGGTGGC GTCCAAGGAC CGCGGAGACC TTCTGGAGGT AAATCTGCAG 
AATGGCATTT TGTTTGTGAA TTCTCGGATC GACCGGGAGG AGCTGTGCGG GAGGAGCGCG 
GAGTGCAACA TCCACCTGGA GGTGATCGTG GACAGGCCGC TGCAGGTTTT CCACGTGGAG 
GTGGAGGTGA GGGACATTAA TGACAACCCG CCAATGTTTC CTCTTAGAGA ACAAAGGCTG 
CTGATTTATG AATCCAAGCA ACCGGACTCA CGTTTTCCGC TAGAGGGAGC ATCTGATGCG 
GACATAGGGG AGAACGCTGT ATTGGTCTAC AGATTAAGTC AAAACGAGTA TTTTTCTTTA 
GAATCATCAA CCAATAGTAA GCAGATTAAA CGACCGTCAC TTATATTAAA GAAGACTCTA 
GATCGGGAGA AAACTCGGGA ACTTAATTTG CTATTAACAG CCACAGATGG CGGAAAACCA 
GAGCTCACCG GTACAGTTCA GCTTTGGGTT CACGTCTTGG ATGTTAACGA CAATGATCCG 
GTGTTCGATC ATTTAGAATA CAAGGTAAGA GTAATGGAAA ATGCTGCCAA GGAAACTCTT 
GTCATAAAGT TGAACGCCAC GGATCTAGAC GAAGGTGTAA ACGGGCAATT GGTATACTCT 
TTGATGTCCA TTAAGCCCAC TGGGAGGCAC TTATTTACTC TAGATGAAAA CAGCGGAGAA 
TTGAGGGTCA ACGGCACCTT AGACTACGAA GAGAACAAGT CTTATGAAAT AGAAGTGCTG 
GCCACGGATA AAGGAGCACC TCCAATGGTA GGTCACTGTG TAGTCTTCGT AGAAATCTTA 
GACACCAATG ACAACTCCCC TGAAGTGACA CTAACTTCGC TGTCCCTCCC AGTAAGAGAA 
GATGCGCAGC CAAATACAGT GATTGCTTTA ATTAGCATAT CCGACCTAGA TTCTGGTATC 
AATGGCCAAG TGACCTGCTC TCTTACACCC AATGTCCCCT TCAAGATCGT ATCCACCTTT 
AAAAACTATT ATTCTCTGGT ATTGGATAGC AGTCTAGACC GCGAGACGGT GTCAACCTAT 
GATTTGGTTG TGACAGCGCG GGATGGGGGT TCACCTTCAC TGTGTGCCAC CGCCAGCGTG 
TCTGTGGAGG TGGCTGACGT GAACGACAAT GCACCTGCGT TCGCGCAGCC CGAACACACG 
GTGTTCGTGA AGGAGAACAA CCCGCCTGGC GCGCACATCT TCACGGTGTC TGCGGAGGAT 
GCAGACGCGC AGGAGAACGC GCTGGTGTCC TACTCACTGG TGGAGCGGCG GGTGGGCGAG 
CGCTTGCTGT CGAGCTATGT CTCTGTGCAC GCTGAGAGCG GCAAGGTGTT CGCGCTGCAG 
CCTCTGGACC ATGAGGAGCT GGAGCTGCTG CAGTTCCAGG TGAGCGCTCA GGACGCTGGT 
GTGCCTGCCC TGGGCAGCAA TGTGACTCTG CAGGTGTTTG TGCTGGATGA AAACGACAAC 
GCACCCATGC TTCTGCCCCA CGGAGCTGTC GGACCTGGCG GGACAGTGAG CGAGCTTGTG 
CCTAGGTCGG TGGGTTCGGG CCATGTGGTC ACCAAGGTTC GCGCAGTGGA TGCGGACTCT 
GGTTACAATG CTTGGCTGTC ATACGAACTA CAATTGGGAA CAGGTGGAGT ACGCAGCCCC 
TTCCGTGTGG GTCTGTACAC GGGTGAGATC AGCACGACAC GTGCCCTGGA TGAGGTGGAC 
GCTCCTCGAC AGACTCTATT GGTGCTGGTG AAGGACCATG GTGAGCCAGC ACTGACAGCC 
ACTGCAACTG TATTAGTGTC TCTTGTGGAA AACAGTCAAG CTCCAAAGTC CTTTTCACAG 
GCATCAGGGC GTGCTTCAGC CCCAGACGCA TCGCTGGTGG ATGTCAACGT GTATTTGATC 
ATTGCCATCT GTGCAGTGTC CAGTCTGTTG GTGCTCACGC TGCTGCTGTA TACAGCGCTG 
CGCTGCTCGG CTTTGCCTAT GGTCAATGAG GCCGCTGGGG GGCCTGGGAA ACCCATGCTG 
GTGTGCTCCA GTGCGGTGGG GAGCTGGTCC TACTCACAGC AGAGGCGGCA GCGGGTGTGC 
TCTGGGGAAG TTCTTCCCAA GACAGACCTC ATGGCCTTTA GCCCCAGCCT ACCTCCCAAC 
ATGGATAGAG ATGAAAGGGA AAGGCAGGAG TCAGAATCAA ATCACCCTGG ACAGCCCCGA 
CAGCCCAACC CTGACTGGCG CTACTCTGCC TCGCTAAGAG CCGGCATGCA CAGCTCTGTG 
CACCTGGAGG AGGCTGGCAT TCTACGGGCT GGTCCAGGAG GGCCTGATCA ACAGTGGCCA 
ACAGTATCCA GTGCAACACC AGAACCAGAG GCAGGAGAGG TGTCCCCTCC AGTGGGCGCT 
GGTGTCAACA GCAACAGCTG GACCTTTAAA TACGGACCCG GCAACCCCAA ACAGCCCGGT 
CCCGGTGAGT TGCCAGACAA ATTCATTATC CCAGGATCTC CTGCAATCAT CTCCATCCGG 
CAGGAGTCTG CTAACAACCA AATTGACAAA AGCGATTTTA TAACCTTCGG CAAAAAGGAG 
GAGACCAAGA AAAAGAAGAA AAAGAAGAAG GGTAACAAGA CCCAGGAGAA AAAAGAGAAA 
GGGAACAGCA CGACGGACAA CAGTGACCAG TGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PubMed

Sequence analysis and expression mapping of the rat clustered protocadherin gene repertoires.
Neuroscience144(2)579-603(2007 Jan)
Zou C,Huang W,Ying G,Wu Q

Comparative genomics and diversifying selection of the clustered vertebrate protocadherin genes.
Genetics169(4)2179-88(2005 Apr)
Wu Q

Interaction with protocadherin-gamma regulates the cell surface expression of protocadherin-alpha.
The Journal of biological chemistry279(47)49508-16(2004 Nov)
Murata Y,Hamada S,Morishita H,Mutoh T,Yagi T

Genomic sequence and organization of the family of CNR/Pcdhalpha genes in rat.
Genomics83(4)717-26(2004 Apr)
Yanase H,Sugino H,Yagi T

Multiple variable first exons: a mechanism for cell- and tissue-specific gene regulation.
Genome research14(1)79-89(2004 Jan)
Zhang T,Haws P,Wu Q

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Pcdha12 cDNA ORF clone, Rattus norvegicus(Norway rat)

Gene

Clones

gRNAs

Related articles in PubMed

Target ORF information:

Target ORF information:

ORF Insert Sequence:

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