Pcdha11 cDNA ORF clone, Mus musculus(house mouse)

Gene
Clones
gRNAs

Summary

Gene Symbol	Pcdha11
Entrez Gene ID	12942
Full Name	protocadherin alpha 11
Synonyms	A830022B16Rik,Cnr7,Crnr7
General protein information	Preferred Names protocadherin alpha 11 Names protocadherin alpha-11 cadherin-related neuronal receptor 7
Gene Type	protein-coding
Organism	Mus musculus(house mouse)
Genome	Chromosome: 18 Map Location: 18\|18 B2-B3

mRNA and Protein(s)

mRNA	Protein	Name
NM_009960.1	NP_034090.1	protocadherin alpha-11 precursor

Pathways from BioSystems

Homologies

Homo sapiens (human)	PCDHA11	NP_061725.1
Rattus norvegicus (Norway rat)	Pcdha12	NP_446392.1
Mus musculus (house mouse)	Pcdha11	NP_034090.1
Pan troglodytes (chimpanzee)	PCDHA11	NP_001076057.1

Gene Ontology
Bibliography

Related articles in PubMed

Developmental epigenetic modification regulates stochastic expression of clustered protocadherin genes, generating single neuron diversity.
Toyoda S, Kawaguchi M, Kobayashi T, Tarusawa E, Toyama T, Okano M, Oda M, Nakauchi H, Yoshimura Y, Sanbo M, Hirabayashi M, Hirayama T, Hirabayashi T, Yagi T
Neuron82(1)94-108(2014 Apr)

Monoallelic yet combinatorial expression of variable exons of the protocadherin-alpha gene cluster in single neurons.
Esumi S, Kakazu N, Taguchi Y, Hirayama T, Sasaki A, Hirabayashi T, Koide T, Kitsukawa T, Hamada S, Yagi T
Nature genetics37(2)171-6(2005 Feb)

CNR/Pcdhalpha family in subplate neurons, and developing cortical connectivity.
Morishita H, Murata Y, Esumi S, Hamada S, Yagi T
Neuroreport15(17)2595-9(2004 Dec)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following Pcdha11 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the Pcdha11 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)	Select
OMu05226	NM_009960.1 Latest version!	Mus musculus protocadherin alpha 11 (Pcdha11), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	12-14	$559.30 $799.00

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** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

Pcdha11 ( NM_009960.1 ) cDNA ORF clone, Mus musculus(house mouse) -> NP_034090.1 Mus musculus protocadherin alpha 11 (Pcdha11), mRNA.

Price & Availability↑

CloneID	OMu05226
Clone ID Related Accession (Same CDS sequence)	NM_009960.1
Accession Version	NM_009960.1 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 2853bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2019-09-10
Organism	Mus musculus(house mouse)
Product	protocadherin alpha-11 precursor
Comment	Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AY013758.1. On May 4, 2006 this sequence version replaced XM_991317.1. Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications. ##Evidence-Data-START## Transcript exon combination :: AY013758.1, SRR1660821.190293.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN01164131, SAMN01164132 [ECO:0000348] ##Evidence-Data-END##

ATGTTAAGTT TTCAGAGAAG GGGATCCTGC ACTCTGCCAC CGCTGCGCTG GCTTCTTCTC 
CTCGCTGCCT GGGAGGCAGG GAGCGGCCAG CTCCACTACT CTATCCCAGA GGAGGCCAAA 
CACGGCACCT TCGTGGGCCG CATCGCGCAG GACCTGGGGC TGGAGCTGAC GGAGCTGGTG 
CCCCGCCTGT TCAGGGTGGC GTCCAAGGAC CGCGGGGACC TTCTGGAGGT AAATCTGCAG 
AATGGCATTT TGTTTGTGAA TTCTCGGATC GACCGGGAGG AGCTGTGCGG GCGGAGCGCG 
GAGTGCAGCA TCCACCTGGA GGTGATCGTG GACAGGCCGC TGCAGGTTTT CCACGTGGAG 
GTGGAGGTGA GGGACATTAA TGACAACCCG CCAGTGTTTC CTCTTAGAGA ACAAAGGCTG 
CTTATTTCTG AATCCAAGCA ACCAGACTCG CGTTTTCCGC TAGAGGGAGC GTCTGATGCG 
GACATAGGAG AGAACGCTGT ATTGGTCTAC AGATTAAGTC AAAACGAGTA TTTTTCTTTA 
GAACCACCAA TCAATAGTAA GCAAACTAAA AGACCGTCAC TTATATTAAA GAAGGTTCTA 
GATCGGGAGA AAACCCCGGA ACTTAATTTG CTATTAACAG CCACAGATGG GGGAAAACCG 
GAGCTCACGG GTACAGTTCA GCTTTGGGTT CGTGTCTTAG ATGTTAACGA CAATGATCCA 
GTGTTCGATC ATTTAGAATA CAAGGTAAGA ATAATGGAAA ATGCTGCTAA AGAAACTCTT 
GTCATAACGT TGAACGCCAC GGATCTAGAC GAAGGTGCAA ACGGGCAACT GGTATACTCT 
TTGATGTCCA TTAAGCCCAC TGGGAGGCAT TTATTTACCC TAGATGAAAA AAATGGAGAA 
TTGAGGGTCA ACGGGACTTT AGATTATGAA GAGAACAAAT TGTATGAAAT AGAAGTGCTG 
GCCACGGATA AAGGAACACC TCCAATGGTA GGTCACTGTG TAGTCTTGGT AGAAATCTTA 
GACACCAATG ACAACTCCCC TGAAGTGACA TTAACTTCGC TGTCCCTCCC AGTAAGAGAG 
GATGCCCAGC CAAATACAGT CATTGCTTTA ATTAGCGTAT CCGACCTTGA TTCTGGAATC 
AATGGCCAAG TGACCTGCTC TCTTACACCC AATGTCCCCT TCAAGATTGT ATCCACCTTT 
AAAAATTATT ATTCTCTGGT ACTGGATAGC AGTCTGGACC GCGAGAGAGT GTCAACTTAT 
GATTTGGTTG TGATAGCGCG GGACGGGGGC TCGCCTTCAC TGTCTGCCAC TGTCAGCGTG 
TCCGTGGAAG TGGCTGACGT GAACGACAAT GCTCCAGTGT TCGCGCAGCC TGAATACACG 
GTGTTCGTGA AGGAGAACAA CCCGCCTGGA GCGCACATCT TTACAGTGTC AGCGATGGAT 
GCGGATGCGC AGGAGAACGC GCTGGTGTCC TACTCGCTGG TGGAGCGGAG GGTGGGCGAG 
CGCTTGCTGT CGAGCTATGT GTCTGTGCAC GCGGAGAGCG GCAAGGTGTT CGCGCTGCAG 
CCTCTGGACC ATGAGGAGCT GGAGCTGCTG CAGTTCCAGG TGAGCGCGCG GGATGCTGGT 
GTGCCTGCCC TGGGCAGCAA TGTGACTCTG CAGGTGTTTG TGCTGGATGA GAATGACAAT 
GCGCCCACGC TGCTGCCTCA TGGAGCTGTT GGAGCTGGTG GGGCAGTGAG CGAGCTTGTG 
TCTCGGTCGG TGGGATCGGG CCATGTAGTC ACCAAGGTGC GGGCAGTGGA TGCCGACTCT 
GGTTACAATG CTTGGCTGTC ATATGAAGTA CAGTTGGGAA CAGGTGGCGT ACGCAGCCCC 
TTCCGCGTGG GTCTGTACAC GGGTGAGATC AGCACGACGC GTGCCTTGGA TGAGGTGGAC 
TCTCCTCGGC AGACTCTATT GGTGCTGGTG AAGGACCATG GTGAGCCAGC ACTGACAGCC 
ACTGCAACTG TTTTAGTGTC TCTTGTGGAA AGCGGCCAAG CTCCAAAGTC CTTTTCACAG 
GCATCAGGTC GTGCTTCAGC CCCGGAGGCA TCGCTGGTGG ATGTCAACGT GTATTTGATT 
ATCGCCATCT GCGCAGTGTC CAGCCTGTTG GTACTCACGC TGCTGCTGTA TACAGCGCTG 
CGCTGCTCAG CATTGCCTAT GGTCAATGAG GCCACTGGGG GGCCTGGAAA GCCCATGCTG 
GTGTGCTCCA GCGAGGTGGG GAGCTGGTCC TACTCACAGC AGAGGCGGCA GAGGGTGTGC 
TCTGGGGAAG TTCTTCCCAA GACCGACCTC ATGGCATTTA GCCCCAGCCT ACCTCCCAAC 
CTGGGTAGAG ATGAAAGGGA AAGACAGGAG TCAGAGTCAA GTCACCCTGG ACAGCCCCGG 
CAGCCCAACC CTGACTGGCG CTACTCTGCC TCGCTAAGAG CAGGCATGCA CAGCTCTGTG 
CACCTGGAGG AGGCTGGCAT TCTACGGGCT GGTCCAGGAG GGCCTGATCA GCAGTGGCCA 
ACAGTATCCA GTGCAACACC AGAACCTGAG GCAGGAGAGG TGTCCCCTCC GGTGGGCGCC 
GGTGTCAACA GCAACAGCTG GACCTTTAAA TACGGACCAG GCAACCCCAA ACAGTCCGGT 
CCCGGTGAGT TGCCAGACAA ATTCATTATC CCAGGATCTC CTGCAATCAT CTCCATCCGG 
CAGGAGCCTG CTAACAACCA AATTGACAAA AGCGATTTTA TAACCTTCGG CAAAAAGGAG 
GAGACCAAGA AAAAGAAGAA AAAGAAGAAG GGTAACAAGA CCCAGGAGAA AAAAGAGAAA 
GGGAACAGCA CGACGGACAA CAGTGACCAG TGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_034090.1
CDS	1..2853
Translation	MLSFQRRGSCTLPPLRWLLLLAAWEAGSGQLHYSIPEEAKHGTFVGRIAQDLGLELTELVPRLFRVASKDRGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVEVEVRDINDNPPVFPLREQRLLISESKQPDSRFPLEGASDADIGENAVLVYRLSQNEYFSLEPPINSKQTKRPSLILKKVLDREKTPELNLLLTATDGGKPELTGTVQLWVRVLDVNDNDPVFDHLEYKVRIMENAAKETLVITLNATDLDEGANGQLVYSLMSIKPTGRHLFTLDEKNGELRVNGTLDYEENKLYEIEVLATDKGTPPMVGHCVVLVEILDTNDNSPEVTLTSLSLPVREDAQPNTVIALISVSDLDSGINGQVTCSLTPNVPFKIVSTFKNYYSLVLDSSLDRERVSTYDLVVIARDGGSPSLSATVSVSVEVADVNDNAPVFAQPEYTVFVKENNPPGAHIFTVSAMDADAQENALVSYSLVERRVGERLLSSYVSVHAESGKVFALQPLDHEELELLQFQVSARDAGVPALGSNVTLQVFVLDENDNAPTLLPHGAVGAGGAVSELVSRSVGSGHVVTKVRAVDADSGYNAWLSYEVQLGTGGVRSPFRVGLYTGEISTTRALDEVDSPRQTLLVLVKDHGEPALTATATVLVSLVESGQAPKSFSQASGRASAPEASLVDVNVYLIIAICAVSSLLVLTLLLYTALRCSALPMVNEATGGPGKPMLVCSSEVGSWSYSQQRRQRVCSGEVLPKTDLMAFSPSLPPNLGRDERERQESESSHPGQPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWPTVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIRQEPANNQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ

Target ORF information:

RefSeq Version	NM_009960.1
Organism	Mus musculus(house mouse)
Definition	Mus musculus protocadherin alpha 11 (Pcdha11), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_009960.1

ORF Insert Sequence:

ATGTTAAGTT TTCAGAGAAG GGGATCCTGC ACTCTGCCAC CGCTGCGCTG GCTTCTTCTC 
CTCGCTGCCT GGGAGGCAGG GAGCGGCCAG CTCCACTACT CTATCCCAGA GGAGGCCAAA 
CACGGCACCT TCGTGGGCCG CATCGCGCAG GACCTGGGGC TGGAGCTGAC GGAGCTGGTG 
CCCCGCCTGT TCAGGGTGGC GTCCAAGGAC CGCGGGGACC TTCTGGAGGT AAATCTGCAG 
AATGGCATTT TGTTTGTGAA TTCTCGGATC GACCGGGAGG AGCTGTGCGG GCGGAGCGCG 
GAGTGCAGCA TCCACCTGGA GGTGATCGTG GACAGGCCGC TGCAGGTTTT CCACGTGGAG 
GTGGAGGTGA GGGACATTAA TGACAACCCG CCAGTGTTTC CTCTTAGAGA ACAAAGGCTG 
CTTATTTCTG AATCCAAGCA ACCAGACTCG CGTTTTCCGC TAGAGGGAGC GTCTGATGCG 
GACATAGGAG AGAACGCTGT ATTGGTCTAC AGATTAAGTC AAAACGAGTA TTTTTCTTTA 
GAACCACCAA TCAATAGTAA GCAAACTAAA AGACCGTCAC TTATATTAAA GAAGGTTCTA 
GATCGGGAGA AAACCCCGGA ACTTAATTTG CTATTAACAG CCACAGATGG GGGAAAACCG 
GAGCTCACGG GTACAGTTCA GCTTTGGGTT CGTGTCTTAG ATGTTAACGA CAATGATCCA 
GTGTTCGATC ATTTAGAATA CAAGGTAAGA ATAATGGAAA ATGCTGCTAA AGAAACTCTT 
GTCATAACGT TGAACGCCAC GGATCTAGAC GAAGGTGCAA ACGGGCAACT GGTATACTCT 
TTGATGTCCA TTAAGCCCAC TGGGAGGCAT TTATTTACCC TAGATGAAAA AAATGGAGAA 
TTGAGGGTCA ACGGGACTTT AGATTATGAA GAGAACAAAT TGTATGAAAT AGAAGTGCTG 
GCCACGGATA AAGGAACACC TCCAATGGTA GGTCACTGTG TAGTCTTGGT AGAAATCTTA 
GACACCAATG ACAACTCCCC TGAAGTGACA TTAACTTCGC TGTCCCTCCC AGTAAGAGAG 
GATGCCCAGC CAAATACAGT CATTGCTTTA ATTAGCGTAT CCGACCTTGA TTCTGGAATC 
AATGGCCAAG TGACCTGCTC TCTTACACCC AATGTCCCCT TCAAGATTGT ATCCACCTTT 
AAAAATTATT ATTCTCTGGT ACTGGATAGC AGTCTGGACC GCGAGAGAGT GTCAACTTAT 
GATTTGGTTG TGATAGCGCG GGACGGGGGC TCGCCTTCAC TGTCTGCCAC TGTCAGCGTG 
TCCGTGGAAG TGGCTGACGT GAACGACAAT GCTCCAGTGT TCGCGCAGCC TGAATACACG 
GTGTTCGTGA AGGAGAACAA CCCGCCTGGA GCGCACATCT TTACAGTGTC AGCGATGGAT 
GCGGATGCGC AGGAGAACGC GCTGGTGTCC TACTCGCTGG TGGAGCGGAG GGTGGGCGAG 
CGCTTGCTGT CGAGCTATGT GTCTGTGCAC GCGGAGAGCG GCAAGGTGTT CGCGCTGCAG 
CCTCTGGACC ATGAGGAGCT GGAGCTGCTG CAGTTCCAGG TGAGCGCGCG GGATGCTGGT 
GTGCCTGCCC TGGGCAGCAA TGTGACTCTG CAGGTGTTTG TGCTGGATGA GAATGACAAT 
GCGCCCACGC TGCTGCCTCA TGGAGCTGTT GGAGCTGGTG GGGCAGTGAG CGAGCTTGTG 
TCTCGGTCGG TGGGATCGGG CCATGTAGTC ACCAAGGTGC GGGCAGTGGA TGCCGACTCT 
GGTTACAATG CTTGGCTGTC ATATGAAGTA CAGTTGGGAA CAGGTGGCGT ACGCAGCCCC 
TTCCGCGTGG GTCTGTACAC GGGTGAGATC AGCACGACGC GTGCCTTGGA TGAGGTGGAC 
TCTCCTCGGC AGACTCTATT GGTGCTGGTG AAGGACCATG GTGAGCCAGC ACTGACAGCC 
ACTGCAACTG TTTTAGTGTC TCTTGTGGAA AGCGGCCAAG CTCCAAAGTC CTTTTCACAG 
GCATCAGGTC GTGCTTCAGC CCCGGAGGCA TCGCTGGTGG ATGTCAACGT GTATTTGATT 
ATCGCCATCT GCGCAGTGTC CAGCCTGTTG GTACTCACGC TGCTGCTGTA TACAGCGCTG 
CGCTGCTCAG CATTGCCTAT GGTCAATGAG GCCACTGGGG GGCCTGGAAA GCCCATGCTG 
GTGTGCTCCA GCGAGGTGGG GAGCTGGTCC TACTCACAGC AGAGGCGGCA GAGGGTGTGC 
TCTGGGGAAG TTCTTCCCAA GACCGACCTC ATGGCATTTA GCCCCAGCCT ACCTCCCAAC 
CTGGGTAGAG ATGAAAGGGA AAGACAGGAG TCAGAGTCAA GTCACCCTGG ACAGCCCCGG 
CAGCCCAACC CTGACTGGCG CTACTCTGCC TCGCTAAGAG CAGGCATGCA CAGCTCTGTG 
CACCTGGAGG AGGCTGGCAT TCTACGGGCT GGTCCAGGAG GGCCTGATCA GCAGTGGCCA 
ACAGTATCCA GTGCAACACC AGAACCTGAG GCAGGAGAGG TGTCCCCTCC GGTGGGCGCC 
GGTGTCAACA GCAACAGCTG GACCTTTAAA TACGGACCAG GCAACCCCAA ACAGTCCGGT 
CCCGGTGAGT TGCCAGACAA ATTCATTATC CCAGGATCTC CTGCAATCAT CTCCATCCGG 
CAGGAGCCTG CTAACAACCA AATTGACAAA AGCGATTTTA TAACCTTCGG CAAAAAGGAG 
GAGACCAAGA AAAAGAAGAA AAAGAAGAAG GGTAACAAGA CCCAGGAGAA AAAAGAGAAA 
GGGAACAGCA CGACGGACAA CAGTGACCAG TGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PubMed

Developmental epigenetic modification regulates stochastic expression of clustered protocadherin genes, generating single neuron diversity.
Neuron82(1)94-108(2014 Apr)
Toyoda S,Kawaguchi M,Kobayashi T,Tarusawa E,Toyama T,Okano M,Oda M,Nakauchi H,Yoshimura Y,Sanbo M,Hirabayashi M,Hirayama T,Hirabayashi T,Yagi T

Monoallelic yet combinatorial expression of variable exons of the protocadherin-alpha gene cluster in single neurons.
Nature genetics37(2)171-6(2005 Feb)
Esumi S,Kakazu N,Taguchi Y,Hirayama T,Sasaki A,Hirabayashi T,Koide T,Kitsukawa T,Hamada S,Yagi T

CNR/Pcdhalpha family in subplate neurons, and developing cortical connectivity.
Neuroreport15(17)2595-9(2004 Dec)
Morishita H,Murata Y,Esumi S,Hamada S,Yagi T

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Pcdha11 cDNA ORF clone, Mus musculus(house mouse)

Gene

Clones

gRNAs

Related articles in PubMed

Target ORF information:

Target ORF information:

ORF Insert Sequence:

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