Pcdha10 cDNA ORF clone, Rattus norvegicus(Norway rat)

Gene
Clones
gRNAs

Summary

Gene Symbol	Pcdha10
Entrez Gene ID	116778
Full Name	protocadherin alpha 10
Synonyms	rCNRv10
General protein information	Preferred Names protocadherin alpha 10 Names protocadherin alpha-10 cadherin-related neuronal receptor 10
Gene Type	protein-coding
Organism	Rattus norvegicus(Norway rat)
Genome	Chromosome: 18 Map Location: 18p11
Summary	may play a role in cell-cell adhesion during spermatogenesis [RGD, Feb 2006].

mRNA and Protein(s)

mRNA	Protein	Name
NM_053939.1	NP_446391.1	protocadherin alpha-10

Pathways from BioSystems

Homologies

Pan troglodytes (chimpanzee)	PCDHA10	XP_003310923.1
Rattus norvegicus (Norway rat)	Pcdha10	NP_446391.1
Homo sapiens (human)	PCDHA10	NP_061724.1
	PCDHA10	XP_002804601.1
Canis lupus familiaris (dog)	PCDHA10	XP_848955.2
Mus musculus (house mouse)	Pcdha9	NP_619602.1

Gene Ontology
Bibliography

Related articles in PubMed

Sequence analysis and expression mapping of the rat clustered protocadherin gene repertoires.
Zou C, Huang W, Ying G, Wu Q
Neuroscience144(2)579-603(2007 Jan)

Comparative genomics and diversifying selection of the clustered vertebrate protocadherin genes.
Wu Q
Genetics169(4)2179-88(2005 Apr)

Interaction with protocadherin-gamma regulates the cell surface expression of protocadherin-alpha.
Murata Y, Hamada S, Morishita H, Mutoh T, Yagi T
The Journal of biological chemistry279(47)49508-16(2004 Nov)

Genomic sequence and organization of the family of CNR/Pcdhalpha genes in rat.
Yanase H, Sugino H, Yagi T
Genomics83(4)717-26(2004 Apr)

Multiple variable first exons: a mechanism for cell- and tissue-specific gene regulation.
Zhang T, Haws P, Wu Q
Genome research14(1)79-89(2004 Jan)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following Pcdha10 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the Pcdha10 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)	Select
ORa11114	NM_053939.1 Latest version!	Rattus norvegicus protocadherin alpha 10 (Pcdha10), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	12-14	$475.30 $679.00

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** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

Pcdha10 ( NM_053939.1 ) cDNA ORF clone, Rattus norvegicus(Norway rat) -> NP_446391.1 Rattus norvegicus protocadherin alpha 10 (Pcdha10), mRNA.

Price & Availability↑

CloneID	ORa11114
Clone ID Related Accession (Same CDS sequence)	NM_053939.1
Accession Version	NM_053939.1 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 2940bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2017-09-30
Organism	Rattus norvegicus(Norway rat)
Product	protocadherin alpha-10
Comment	Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AB113393.1. On Jan 28, 2004 this sequence version replaced XM_344665.1. ##Evidence-Data-START## Transcript exon combination :: AB113393.1, AY573972.1 [ECO:0000332] ##Evidence-Data-END##

ATGAGCTTGG AAAACCGACC AGAAGATATT AGAACTTTTG TGAGTCCCAG ATGGCATATT 
CATGGATGTT TAAGACAAGA GAAGGCTTCA GTGGTGATCT CCAGATGTCT GAGCTATGGA 
GCTTGGCGCC TGCTACTTTG GCTTCTGCTC GTTGCAACAT GGGATGCAGG GAGTGCCCAG 
CTCCACTACT CTATCCCAGA AGAGGCCAAA CACGGCACCT TCGTGGGCCG CATCGCGCAG 
GACCTGGGGC TGGAGCTGAT GGAGCTGGTG CCCCGCCTGT TCAGGGTGGC GTCCAAGGAC 
CGCGGAGACC TTCTGGAGGT AAATCTGCAG AATGGTATCT TGTTTGTGAA TTCTCGGATC 
GATCGGGAGG AGCTGTGCGG GAGGAGCGCG GAGTGTAGCA TCCACCTGGA GGTGATCGTG 
GACAGACCGC TGCAGGTTTT CCACGTGGAG GTGGAGGTGA GGGACATTAA TGACAACCCT 
CCGCTATTCT CCGTAGCGGA ACAAAAGATC TTGGTACCCG AATCTAGACT GCTTGATTCT 
CAATTTCCAC TAGAAGGCGC ATCTGATGCA GATGTTGGAG AGAACTCGAT GCTTACTTAC 
AAACTTAGTT CAAACGAATT TTTTATCCTT GATATTGTAA ACAAAAAAGG CAAAGACAAG 
TTCCCAGTGC TTGTTCTTCG AAAACTGATA GATCGAGAAG AAAATCCTCA GCTAAAGTTG 
CTACTGACAG CAACCGATGG AGGCAAACCT GAGTTCACAG GATCGGTTTC TCTGTTGATC 
CAGGTGTTGG ATGTTAATGA TAACGCGCCT GTGTTTGACA GATCTGTTTA TGAAGTTAAG 
ATGTATGAGA ATCAAGAGAA TCAAACCTTA GTAATACGGC TGAATGCTAC AGACTCAGAT 
GAAGGAATAA ACAAAGAAGT GGAGTATTCA TTTAGCTCTT TGACCTCGTC TACTATAAAA 
AGGAAATTTC TAATAAACGA AAAGACTGGA GAGATAAGAG TAAATGGCGC TATTGACTTT 
GAGGAGAGTA ACAATTATGA AATTCGTGTG GATGCTACGG ATAAAGGTTA TCCACCTATG 
GTTGCTCACT GCACTGTACT CGTGGAAATC TTGGATGAAA ATGATAATAC CCCAGAGATA 
GTCCTTACTT CTTTGTCTCT CCCGGTGAAA GAAGATGCTC TTTTGGGCTC TGTAATCGCC 
CTGATCAGCG TGTCAGACAA AGACTCTGGT GTCAATGGGC AGGTCACCTG CTCCTTGGCT 
AATCACGTCC CCTTCAAGCT GGTTTCCACC TTCAAGAATT ACTATTCCCT CGTGCTAGAC 
AGTGCCCTGG ACCGAGAGAC CACAACTGAC TATAAGGTGG TGGTGATAGC GCGGGACGGG 
GGCTCGCCTT CGCTGTGTGC CACTGCCAGC GTGTCTGTGG AGGTGGCTGA CGTGAACGAC 
AATGCTCCTG CATTCGCGCA GCCCGAATAC ACGGTGTTTG TGAAAGAGAA CAACCCTCCT 
GGCGCGCATA TCTTCACGGT GTCTGCGGTG GACGCAGACG CACAGGAGAA CGCGCTGGTG 
TCCTACTCGC TGGTGGAGCG GCGAGTGGGT GAGCGCTTGC TGTCGAGCTA TGTGTCTGTG 
CACGCGGAGA GCGGCAAGGT GTTCGCGCTG CAGCCTCTGG ACCATGAGGA GCTGGAGCTG 
CTGCAGTTCC AGGTGAGCGC GCGGGACGCT GGTGTGCCTG CCCTGGGCAG CAATGTGACT 
CTGCAGGTGT TTGTGCTGGA TGAGAACGAC AATGCACCCA CGGTGCTGGG GCAGCAGTCA 
AGCGGACCTA TGGGCGAATT TAGCCAACTT GTGTCGCGGT CAGTGGGTGC GGGACACGTG 
GTGTCAAAAG TGCGCGCAGT GGATGCAGAC TCTGGTTACA ATGCTTGGCT GTGTTATGAG 
CTTCATACGG CTGTGGGGGC GCGCAGCCCT TTCCGTGTGG GTCTCTACAC CGGTGAGATC 
AGCACGACAC GAGACCTGGA TGAATCTGAT TTACCGCGCC AGCGCCTATT GGTGTTGGTG 
AAGGACCATG GCGAACCTAT GTTGATCACC ACTGCCACCG TTCTGGTGTC CCTGGTGGAG 
AACGGCCAGA TGCCAAAAGC TTCTTCCCAG GGGTTGCCTA ACTCGTCCCG CAGGGAGGAG 
TCGCTGGTAG ATGTCAATGT GTATTTGATC ATCGCCATCT GCGCAGTGTC AAGCCTGTTG 
GTTCTCACGC TGCTGCTATA TACAGCCCTC CGATGCTCAG CTGTGCCCAT GCAGGGTGGG 
TGCGGACTCG GGAAGCCCAC TCTGGTGTGC TCCAGCGCGG TGGGAACCTG GTCATACTCA 
CAGCAGAGAC AGCAGCGAGT ATGTTCTGGA GAGGGTCCGC CCAAGACCGA CCTCATGGCT 
TTTAGTCCCA GTCTTACCCC TTGCCCAGTG ACCGAAGTGG GAATGGAAAA TCATTCTGCT 
GGAGGAGACT TGTCCGGGAA GCCCCGACAG CCCAACCCTG ACTGGCGCTA CTCTGCCTCG 
CTAAGAGCCG GCATGCACAG CTCTGTGCAC CTGGAGGAGG CTGGCATTCT ACGGGCTGGT 
CCAGGAGGGC CTGATCAACA GTGGCCAACA GTATCCAGTG CAACACCAGA ACCAGAGGCA 
GGAGAGGTGT CCCCTCCAGT GGGCGCTGGT GTCAACAGCA ACAGCTGGAC CTTTAAATAC 
GGACCCGGCA ACCCCAAACA GCCCGGTCCC GGTGAGTTGC CAGACAAATT CATTATCCCA 
GGATCTCCTG CAATCATCTC CATCCGGCAG GAGTCTGCTA ACAACCAAAT TGACAAAAGC 
GATTTTATAA CCTTCGGCAA AAAGGAGGAG ACCAAGAAAA AGAAGAAAAA GAAGAAGGGT 
AACAAGACCC AGGAGAAAAA AGAGAAAGGG AACAGCACGA CGGACAACAG TGACCAGTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_446391.1
CDS	1..2940
Translation	MSLENRPEDIRTFVSPRWHIHGCLRQEKASVVISRCLSYGAWRLLLWLLLVATWDAGSAQLHYSIPEEAKHGTFVGRIAQDLGLELMELVPRLFRVASKDRGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVEVEVRDINDNPPLFSVAEQKILVPESRLLDSQFPLEGASDADVGENSMLTYKLSSNEFFILDIVNKKGKDKFPVLVLRKLIDREENPQLKLLLTATDGGKPEFTGSVSLLIQVLDVNDNAPVFDRSVYEVKMYENQENQTLVIRLNATDSDEGINKEVEYSFSSLTSSTIKRKFLINEKTGEIRVNGAIDFEESNNYEIRVDATDKGYPPMVAHCTVLVEILDENDNTPEIVLTSLSLPVKEDALLGSVIALISVSDKDSGVNGQVTCSLANHVPFKLVSTFKNYYSLVLDSALDRETTTDYKVVVIARDGGSPSLCATASVSVEVADVNDNAPAFAQPEYTVFVKENNPPGAHIFTVSAVDADAQENALVSYSLVERRVGERLLSSYVSVHAESGKVFALQPLDHEELELLQFQVSARDAGVPALGSNVTLQVFVLDENDNAPTVLGQQSSGPMGEFSQLVSRSVGAGHVVSKVRAVDADSGYNAWLCYELHTAVGARSPFRVGLYTGEISTTRDLDESDLPRQRLLVLVKDHGEPMLITTATVLVSLVENGQMPKASSQGLPNSSRREESLVDVNVYLIIAICAVSSLLVLTLLLYTALRCSAVPMQGGCGLGKPTLVCSSAVGTWSYSQQRQQRVCSGEGPPKTDLMAFSPSLTPCPVTEVGMENHSAGGDLSGKPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWPTVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQPGPGELPDKFIIPGSPAIISIRQESANNQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ

Target ORF information:

RefSeq Version	NM_053939.1
Organism	Rattus norvegicus(Norway rat)
Definition	Rattus norvegicus protocadherin alpha 10 (Pcdha10), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_053939.1

ORF Insert Sequence:

ATGAGCTTGG AAAACCGACC AGAAGATATT AGAACTTTTG TGAGTCCCAG ATGGCATATT 
CATGGATGTT TAAGACAAGA GAAGGCTTCA GTGGTGATCT CCAGATGTCT GAGCTATGGA 
GCTTGGCGCC TGCTACTTTG GCTTCTGCTC GTTGCAACAT GGGATGCAGG GAGTGCCCAG 
CTCCACTACT CTATCCCAGA AGAGGCCAAA CACGGCACCT TCGTGGGCCG CATCGCGCAG 
GACCTGGGGC TGGAGCTGAT GGAGCTGGTG CCCCGCCTGT TCAGGGTGGC GTCCAAGGAC 
CGCGGAGACC TTCTGGAGGT AAATCTGCAG AATGGTATCT TGTTTGTGAA TTCTCGGATC 
GATCGGGAGG AGCTGTGCGG GAGGAGCGCG GAGTGTAGCA TCCACCTGGA GGTGATCGTG 
GACAGACCGC TGCAGGTTTT CCACGTGGAG GTGGAGGTGA GGGACATTAA TGACAACCCT 
CCGCTATTCT CCGTAGCGGA ACAAAAGATC TTGGTACCCG AATCTAGACT GCTTGATTCT 
CAATTTCCAC TAGAAGGCGC ATCTGATGCA GATGTTGGAG AGAACTCGAT GCTTACTTAC 
AAACTTAGTT CAAACGAATT TTTTATCCTT GATATTGTAA ACAAAAAAGG CAAAGACAAG 
TTCCCAGTGC TTGTTCTTCG AAAACTGATA GATCGAGAAG AAAATCCTCA GCTAAAGTTG 
CTACTGACAG CAACCGATGG AGGCAAACCT GAGTTCACAG GATCGGTTTC TCTGTTGATC 
CAGGTGTTGG ATGTTAATGA TAACGCGCCT GTGTTTGACA GATCTGTTTA TGAAGTTAAG 
ATGTATGAGA ATCAAGAGAA TCAAACCTTA GTAATACGGC TGAATGCTAC AGACTCAGAT 
GAAGGAATAA ACAAAGAAGT GGAGTATTCA TTTAGCTCTT TGACCTCGTC TACTATAAAA 
AGGAAATTTC TAATAAACGA AAAGACTGGA GAGATAAGAG TAAATGGCGC TATTGACTTT 
GAGGAGAGTA ACAATTATGA AATTCGTGTG GATGCTACGG ATAAAGGTTA TCCACCTATG 
GTTGCTCACT GCACTGTACT CGTGGAAATC TTGGATGAAA ATGATAATAC CCCAGAGATA 
GTCCTTACTT CTTTGTCTCT CCCGGTGAAA GAAGATGCTC TTTTGGGCTC TGTAATCGCC 
CTGATCAGCG TGTCAGACAA AGACTCTGGT GTCAATGGGC AGGTCACCTG CTCCTTGGCT 
AATCACGTCC CCTTCAAGCT GGTTTCCACC TTCAAGAATT ACTATTCCCT CGTGCTAGAC 
AGTGCCCTGG ACCGAGAGAC CACAACTGAC TATAAGGTGG TGGTGATAGC GCGGGACGGG 
GGCTCGCCTT CGCTGTGTGC CACTGCCAGC GTGTCTGTGG AGGTGGCTGA CGTGAACGAC 
AATGCTCCTG CATTCGCGCA GCCCGAATAC ACGGTGTTTG TGAAAGAGAA CAACCCTCCT 
GGCGCGCATA TCTTCACGGT GTCTGCGGTG GACGCAGACG CACAGGAGAA CGCGCTGGTG 
TCCTACTCGC TGGTGGAGCG GCGAGTGGGT GAGCGCTTGC TGTCGAGCTA TGTGTCTGTG 
CACGCGGAGA GCGGCAAGGT GTTCGCGCTG CAGCCTCTGG ACCATGAGGA GCTGGAGCTG 
CTGCAGTTCC AGGTGAGCGC GCGGGACGCT GGTGTGCCTG CCCTGGGCAG CAATGTGACT 
CTGCAGGTGT TTGTGCTGGA TGAGAACGAC AATGCACCCA CGGTGCTGGG GCAGCAGTCA 
AGCGGACCTA TGGGCGAATT TAGCCAACTT GTGTCGCGGT CAGTGGGTGC GGGACACGTG 
GTGTCAAAAG TGCGCGCAGT GGATGCAGAC TCTGGTTACA ATGCTTGGCT GTGTTATGAG 
CTTCATACGG CTGTGGGGGC GCGCAGCCCT TTCCGTGTGG GTCTCTACAC CGGTGAGATC 
AGCACGACAC GAGACCTGGA TGAATCTGAT TTACCGCGCC AGCGCCTATT GGTGTTGGTG 
AAGGACCATG GCGAACCTAT GTTGATCACC ACTGCCACCG TTCTGGTGTC CCTGGTGGAG 
AACGGCCAGA TGCCAAAAGC TTCTTCCCAG GGGTTGCCTA ACTCGTCCCG CAGGGAGGAG 
TCGCTGGTAG ATGTCAATGT GTATTTGATC ATCGCCATCT GCGCAGTGTC AAGCCTGTTG 
GTTCTCACGC TGCTGCTATA TACAGCCCTC CGATGCTCAG CTGTGCCCAT GCAGGGTGGG 
TGCGGACTCG GGAAGCCCAC TCTGGTGTGC TCCAGCGCGG TGGGAACCTG GTCATACTCA 
CAGCAGAGAC AGCAGCGAGT ATGTTCTGGA GAGGGTCCGC CCAAGACCGA CCTCATGGCT 
TTTAGTCCCA GTCTTACCCC TTGCCCAGTG ACCGAAGTGG GAATGGAAAA TCATTCTGCT 
GGAGGAGACT TGTCCGGGAA GCCCCGACAG CCCAACCCTG ACTGGCGCTA CTCTGCCTCG 
CTAAGAGCCG GCATGCACAG CTCTGTGCAC CTGGAGGAGG CTGGCATTCT ACGGGCTGGT 
CCAGGAGGGC CTGATCAACA GTGGCCAACA GTATCCAGTG CAACACCAGA ACCAGAGGCA 
GGAGAGGTGT CCCCTCCAGT GGGCGCTGGT GTCAACAGCA ACAGCTGGAC CTTTAAATAC 
GGACCCGGCA ACCCCAAACA GCCCGGTCCC GGTGAGTTGC CAGACAAATT CATTATCCCA 
GGATCTCCTG CAATCATCTC CATCCGGCAG GAGTCTGCTA ACAACCAAAT TGACAAAAGC 
GATTTTATAA CCTTCGGCAA AAAGGAGGAG ACCAAGAAAA AGAAGAAAAA GAAGAAGGGT 
AACAAGACCC AGGAGAAAAA AGAGAAAGGG AACAGCACGA CGGACAACAG TGACCAGTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PubMed

Sequence analysis and expression mapping of the rat clustered protocadherin gene repertoires.
Neuroscience144(2)579-603(2007 Jan)
Zou C,Huang W,Ying G,Wu Q

Comparative genomics and diversifying selection of the clustered vertebrate protocadherin genes.
Genetics169(4)2179-88(2005 Apr)
Wu Q

Interaction with protocadherin-gamma regulates the cell surface expression of protocadherin-alpha.
The Journal of biological chemistry279(47)49508-16(2004 Nov)
Murata Y,Hamada S,Morishita H,Mutoh T,Yagi T

Genomic sequence and organization of the family of CNR/Pcdhalpha genes in rat.
Genomics83(4)717-26(2004 Apr)
Yanase H,Sugino H,Yagi T

Multiple variable first exons: a mechanism for cell- and tissue-specific gene regulation.
Genome research14(1)79-89(2004 Jan)
Zhang T,Haws P,Wu Q

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Pcdha10 cDNA ORF clone, Rattus norvegicus(Norway rat)

Gene

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gRNAs

Related articles in PubMed

Target ORF information:

Target ORF information:

ORF Insert Sequence:

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