CIITA cDNA ORF clone, Pseudopodoces humilis(Tibetan ground-tit)

Gene
Clones
gRNAs

Summary

Gene Symbol	CIITA
Entrez Gene ID	102100060
Full Name	class II major histocompatibility complex transactivator
Gene Type	protein-coding
Organism	Pseudopodoces humilis(Tibetan ground-tit)

mRNA and Protein(s)

mRNA	Protein	Name
XM_014252401.1	XP_014107876.1	MHC class II transactivator

Pathways from BioSystems
Gene Ontology

The following CIITA gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the CIITA cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)	Select
OPs13537	XM_014252401.1 Latest version!	Pseudopodoces humilis class II, major histocompatibility complex, transactivator (CIITA), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	19-21	$713.30 $1019.00

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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

CIITA ( XM_014252401.1 ) cDNA ORF clone, Pseudopodoces humilis(Tibetan ground-tit) -> XP_014107876.1 Pseudopodoces humilis class II, major histocompatibility complex, transactivator (CIITA), mRNA.

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CloneID	OPs13537
Clone ID Related Accession (Same CDS sequence)	XM_014252401.1
Accession Version	XM_014252401.1 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 3504bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2015-09-20
Organism	Pseudopodoces humilis(Tibetan ground-tit)
Product	MHC class II transactivator
Comment	Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_005087569.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Pseudopodoces humilis Annotation Release 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 1% of CDS bases ##RefSeq-Attributes-END##

ATGGCAAGTG TTCTGGTGTT TGTTATTTCC TCCTTTCTGC TGTCACTTTC TGTTAGCCCT 
TGGCAGGGCT GGCAGTTATC ATTTTTTGGT ACTGAATCCA GAGTGAAACA GCAGGAACTT 
AAGACAAAGA GACAAACCAT GGATTCAGTA TTTGTGCCTG AAAATGGCTA CCTTGATTTA 
CTGCACAGTG ATATTGATCC ATTGCATCTG TGTACTTTCT TTGATCCTAA GTTACCTGGA 
GATGAAGAAG GTGACTTCTC TACAGATCTT GAAGTTGATG CCAGCAACTA TGAACAGTTA 
AATAATGTGG ATTTCCCATA TGAAAATGGA GATGGCTTCT ACCCCTGTTC CAACACCATG 
GATGCTTATG CTAAAATCGC TGAATTAGTA GAATATGTGC TCAAGGATCA GCAGGAGAAG 
CAGGTCGAAG ACATTTTTGC AGGGAACCTT ATTTTGGATG ACATTGCTGC TGAAAACACT 
GAGAAATTTC CTGACATAAA GATGCAGACA TGTCTTAAAC GAACTTTCTT AGGCTCTGCA 
GCAGAGGGTT ACTGTGATGT TTCAGAACCC AAATATAAGA AAATTGCAGA AGCCCCTGCA 
GTGTCTGCAG GGAATGGCAG TTTCTTTGCT ATGCCTCTCA ACAGCCACCC AGTGAGCTGC 
ACCTCCCTAA CTAACCAGCA CATGTCCTTT TCTGCTCCTG CTGCCCATGG GCTGGAAAGA 
AACCTCATAA TTCCTGGATT GTCAGAACCT TTGACCTCAG AGTGTCTACC AGCCAGTGTG 
AAGGAGTACC AAGAGAATCA AAACTTGGCA AGTGCTCCTC AGCAGATATT TAACTTTGTT 
CTTGAAAATA GCACATCTGA TGTTATAGTA TATCCAGTGC TGGCATCTTC TATGGAAACA 
TTCATGTCTC CAAATTTTCC AGTTAATTTA TGTGCACAAC AAACGTATGC CACAAGCCCC 
GGAATTCCAG ATGCAGCAGC AGACGAATTA GCATATTTAG AGACATTTCA AGAAGATTCC 
ATAATTCCTT CTGAAGAACC TTTCAAAAGA CCAGAGCAAG TGGAAACCTT CTGTTCGTCA 
CTTAAAGATT ATTTCCGAGA CACGTGCAAA TCTGTGACCA TGGAGCGGGA AGTAAATCTG 
GATCACCTGT TCATTGATGG GACACTTGTT CAAACTCAAA CTGAAACAAA GACTGGAAAG 
AATAGTGCAA AAGCAATGGA AAAGGAGCTG GTAACCTGCA GCCTGCAAGA GAAGGAAAAG 
ACAGCCATTG ATAGAAGCCA GATATTTCAA ATCCCACAAC GTAAAGACTT AGAGACTAAA 
GTGATTGTGG TTCTGGGTAA AGCAGGAATG GGCAAAAGCA TTCTGGTTCA GAAGATCTGC 
CAGGACTGGT CCAGTGGAGA GTTTTCTCAG TTTGAATTTG TATTTTGGTT TGACTGCAAA 
CAAATAAGCT TGCCTGAGAA ACGATACAGC CTGAAGGAAC TGCTGCTTGA ATTTTTTGTA 
AAACCTCAAG AGGGAAGCAA AGAGATCTTT GAGTATATAT TGCAAAATCC TGCTAAAGTC 
CTTCTGATTT TTGATGGGTT TAAAGGATTG CATGATCATG AGAATTTTCC TCGCTGCTCA 
GCCAGCCAGC CTGAAAAGGA TTTGTGCAGT ACAAAGGAGC TGCTTTCAGG ACTCATCCAA 
AAGAAGTTAC TCAATGGTTG TACTTTATTA TTTACAGCAA GACCAAAAGA CAAACTGTAC 
CAGTATGCAT CCAAAGTGGA TAAGACTATT GAAATAGTAG GATTTTCCTC TCAGCAGAGA 
GAATTGTACA TAACCAAATA TTTTGAAGAA TCACCCTACT GTGATAGTGC ACTGAAATTA 
ATCAAAGAGC ATGAGTACTT GTTCAGTCAT TGTTACAGCC CTGTTATGTG TAGATTTGTT 
TGTTTTCTCT GTGAGGCAGT GCTTGAAATG GGGGAGAAAA GTCTTCCTTC AACTCTTACT 
GAAGTCTTCC TAAAATTTTT TAAGCAGAAG ATAATGCTTA TGCAAACAGA TGTTACAACC 
ACACAAAATC AAGAGAGTCT TGCTACCCTA GCCCGTATAG CCTGGTGTCT TGGAGAAAAG 
CACCAAAGTG CCATGAAAAG TGATCTTCTT CCTTCTAAGG AAGTTAAAGA GTTTGCTCTG 
AAGTATGGGT TTGTCCTGCC ATTTGCATTT CCCAGACATT CAGATAGTGA AGAAGAGGAA 
TTTGGGAGCA CATTCTCTGA TTTTGTCATT CAGAATTTCT TGTGTGCACT CCACCTTTTG 
TTAGCAGAAG AACTCAAGGA TAAAAATCTA ACAAAGTACC TGTCTTTTCT ATCCAAGAAG 
AAAAAACCTT ATAACTGGTT AGATTTGATG CCTCGATTTT TGGTTGGTTT GATGTTTCTC 
CAGGATGACC TCTATTTGGG CTCTCTTTCA AATGTGGATG CAAAACAGTC AACCAAGAAA 
CAGAAGACAC TCTTGAAATA CATTAGAAGG CTGCAGATTA ATACTCTCTG TCCAGAGAGG 
CTGCTGGAGC TTTTTCATTG TGTTTATGAA ACACAGAACA ATTACCTTCT GCAGCATGTG 
GCCTTAAGAC TCGAACCAGA CTTGTCTTTT CTGGGCATAG TTCTTATACC ACCTGATGTC 
TATGTACTGC TCTCTATTTT GAAAAGGTCA AGAAAAGAGT TTTCCTTGGA TTTGCGAAAC 
AGCAGCATTG ACATGCAAGG GCTGCAAGCC TTGGTCAGCC TAAGGAACGT GACATCATTC 
AGGGCTTCCC TCAGTGACAC AGTCAGGCTC TGGAAATCTT TAGAACAGAC AAAAGAATAT 
GAACTGCTGA AAGCATCCAC AGAAAAATTT GTTCTTGATC CCTTTAAGGC AAAGACAATG 
AAGGACATCA GCGACCTCTC TGACCTTGTA GAGATGCAGA AGATGATGAA TTGTGCTCAA 
GAAGCATCTG GTTGCACCAG CTATGAAATT CCTGCCATTA GAAACCTCAG AAAACTCGAA 
TTTGCGCTGG GTCCAGCATT TGGCCTCCAA GGATTGCTAA AACTCGTGAA AATTCTCGCA 
GCATTTCCAT CACTTCAGCA TTTAGACCTT GATGCTCTGA GTGAAAATGG CATAGGAGAT 
GAAGGAGCAA AGAGTCTATC TGAAGTCTTT CCAACCCTGA CATCACTGGA AACATTAAAT 
TTATCACAGA ATAAAATAAC AGATCTGGGT GCAGAGAACC TCGCTACCGC TCTCCCTTCC 
TTGTCTTCCT TAAAAACACT AAGCTTGTAC AATAATAACA TTTGTGATTT TGGAGCAGAA 
AATCTGGCAA AGGCTCTTCC TGCAATGACA TCTTTAAGAG TGCTAGATGT TCAGTATAAC 
AAAATAACTG GTGTTGGAGC CCAGCAGCTG ACGGACAGCC TACGAAAATG TCCCCATATA 
AAGAACTTGG TGATGTGGAA TCCCACCATT CCCTATGGAG TTCTTGAACA CCTTCACCAG 
CTGGACTCCA GGATCAGTGT GTAG

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	XP_014107876.1
CDS	1..3504
Translation	MASVLVFVISSFLLSLSVSPWQGWQLSFFGTESRVKQQELKTKRQTMDSVFVPENGYLDLLHSDIDPLHLCTFFDPKLPGDEEGDFSTDLEVDASNYEQLNNVDFPYENGDGFYPCSNTMDAYAKIAELVEYVLKDQQEKQVEDIFAGNLILDDIAAENTEKFPDIKMQTCLKRTFLGSAAEGYCDVSEPKYKKIAEAPAVSAGNGSFFAMPLNSHPVSCTSLTNQHMSFSAPAAHGLERNLIIPGLSEPLTSECLPASVKEYQENQNLASAPQQIFNFVLENSTSDVIVYPVLASSMETFMSPNFPVNLCAQQTYATSPGIPDAAADELAYLETFQEDSIIPSEEPFKRPEQVETFCSSLKDYFRDTCKSVTMEREVNLDHLFIDGTLVQTQTETKTGKNSAKAMEKELVTCSLQEKEKTAIDRSQIFQIPQRKDLETKVIVVLGKAGMGKSILVQKICQDWSSGEFSQFEFVFWFDCKQISLPEKRYSLKELLLEFFVKPQEGSKEIFEYILQNPAKVLLIFDGFKGLHDHENFPRCSASQPEKDLCSTKELLSGLIQKKLLNGCTLLFTARPKDKLYQYASKVDKTIEIVGFSSQQRELYITKYFEESPYCDSALKLIKEHEYLFSHCYSPVMCRFVCFLCEAVLEMGEKSLPSTLTEVFLKFFKQKIMLMQTDVTTTQNQESLATLARIAWCLGEKHQSAMKSDLLPSKEVKEFALKYGFVLPFAFPRHSDSEEEEFGSTFSDFVIQNFLCALHLLLAEELKDKNLTKYLSFLSKKKKPYNWLDLMPRFLVGLMFLQDDLYLGSLSNVDAKQSTKKQKTLLKYIRRLQINTLCPERLLELFHCVYETQNNYLLQHVALRLEPDLSFLGIVLIPPDVYVLLSILKRSRKEFSLDLRNSSIDMQGLQALVSLRNVTSFRASLSDTVRLWKSLEQTKEYELLKASTEKFVLDPFKAKTMKDISDLSDLVEMQKMMNCAQEASGCTSYEIPAIRNLRKLEFALGPAFGLQGLLKLVKILAAFPSLQHLDLDALSENGIGDEGAKSLSEVFPTLTSLETLNLSQNKITDLGAENLATALPSLSSLKTLSLYNNNICDFGAENLAKALPAMTSLRVLDVQYNKITGVGAQQLTDSLRKCPHIKNLVMWNPTIPYGVLEHLHQLDSRISV

Target ORF information:

RefSeq Version	XM_014252401.1
Organism	Pseudopodoces humilis(Tibetan ground-tit)
Definition	Pseudopodoces humilis class II, major histocompatibility complex, transactivator (CIITA), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

XM_014252401.1

ORF Insert Sequence:

ATGGCAAGTG TTCTGGTGTT TGTTATTTCC TCCTTTCTGC TGTCACTTTC TGTTAGCCCT 
TGGCAGGGCT GGCAGTTATC ATTTTTTGGT ACTGAATCCA GAGTGAAACA GCAGGAACTT 
AAGACAAAGA GACAAACCAT GGATTCAGTA TTTGTGCCTG AAAATGGCTA CCTTGATTTA 
CTGCACAGTG ATATTGATCC ATTGCATCTG TGTACTTTCT TTGATCCTAA GTTACCTGGA 
GATGAAGAAG GTGACTTCTC TACAGATCTT GAAGTTGATG CCAGCAACTA TGAACAGTTA 
AATAATGTGG ATTTCCCATA TGAAAATGGA GATGGCTTCT ACCCCTGTTC CAACACCATG 
GATGCTTATG CTAAAATCGC TGAATTAGTA GAATATGTGC TCAAGGATCA GCAGGAGAAG 
CAGGTCGAAG ACATTTTTGC AGGGAACCTT ATTTTGGATG ACATTGCTGC TGAAAACACT 
GAGAAATTTC CTGACATAAA GATGCAGACA TGTCTTAAAC GAACTTTCTT AGGCTCTGCA 
GCAGAGGGTT ACTGTGATGT TTCAGAACCC AAATATAAGA AAATTGCAGA AGCCCCTGCA 
GTGTCTGCAG GGAATGGCAG TTTCTTTGCT ATGCCTCTCA ACAGCCACCC AGTGAGCTGC 
ACCTCCCTAA CTAACCAGCA CATGTCCTTT TCTGCTCCTG CTGCCCATGG GCTGGAAAGA 
AACCTCATAA TTCCTGGATT GTCAGAACCT TTGACCTCAG AGTGTCTACC AGCCAGTGTG 
AAGGAGTACC AAGAGAATCA AAACTTGGCA AGTGCTCCTC AGCAGATATT TAACTTTGTT 
CTTGAAAATA GCACATCTGA TGTTATAGTA TATCCAGTGC TGGCATCTTC TATGGAAACA 
TTCATGTCTC CAAATTTTCC AGTTAATTTA TGTGCACAAC AAACGTATGC CACAAGCCCC 
GGAATTCCAG ATGCAGCAGC AGACGAATTA GCATATTTAG AGACATTTCA AGAAGATTCC 
ATAATTCCTT CTGAAGAACC TTTCAAAAGA CCAGAGCAAG TGGAAACCTT CTGTTCGTCA 
CTTAAAGATT ATTTCCGAGA CACGTGCAAA TCTGTGACCA TGGAGCGGGA AGTAAATCTG 
GATCACCTGT TCATTGATGG GACACTTGTT CAAACTCAAA CTGAAACAAA GACTGGAAAG 
AATAGTGCAA AAGCAATGGA AAAGGAGCTG GTAACCTGCA GCCTGCAAGA GAAGGAAAAG 
ACAGCCATTG ATAGAAGCCA GATATTTCAA ATCCCACAAC GTAAAGACTT AGAGACTAAA 
GTGATTGTGG TTCTGGGTAA AGCAGGAATG GGCAAAAGCA TTCTGGTTCA GAAGATCTGC 
CAGGACTGGT CCAGTGGAGA GTTTTCTCAG TTTGAATTTG TATTTTGGTT TGACTGCAAA 
CAAATAAGCT TGCCTGAGAA ACGATACAGC CTGAAGGAAC TGCTGCTTGA ATTTTTTGTA 
AAACCTCAAG AGGGAAGCAA AGAGATCTTT GAGTATATAT TGCAAAATCC TGCTAAAGTC 
CTTCTGATTT TTGATGGGTT TAAAGGATTG CATGATCATG AGAATTTTCC TCGCTGCTCA 
GCCAGCCAGC CTGAAAAGGA TTTGTGCAGT ACAAAGGAGC TGCTTTCAGG ACTCATCCAA 
AAGAAGTTAC TCAATGGTTG TACTTTATTA TTTACAGCAA GACCAAAAGA CAAACTGTAC 
CAGTATGCAT CCAAAGTGGA TAAGACTATT GAAATAGTAG GATTTTCCTC TCAGCAGAGA 
GAATTGTACA TAACCAAATA TTTTGAAGAA TCACCCTACT GTGATAGTGC ACTGAAATTA 
ATCAAAGAGC ATGAGTACTT GTTCAGTCAT TGTTACAGCC CTGTTATGTG TAGATTTGTT 
TGTTTTCTCT GTGAGGCAGT GCTTGAAATG GGGGAGAAAA GTCTTCCTTC AACTCTTACT 
GAAGTCTTCC TAAAATTTTT TAAGCAGAAG ATAATGCTTA TGCAAACAGA TGTTACAACC 
ACACAAAATC AAGAGAGTCT TGCTACCCTA GCCCGTATAG CCTGGTGTCT TGGAGAAAAG 
CACCAAAGTG CCATGAAAAG TGATCTTCTT CCTTCTAAGG AAGTTAAAGA GTTTGCTCTG 
AAGTATGGGT TTGTCCTGCC ATTTGCATTT CCCAGACATT CAGATAGTGA AGAAGAGGAA 
TTTGGGAGCA CATTCTCTGA TTTTGTCATT CAGAATTTCT TGTGTGCACT CCACCTTTTG 
TTAGCAGAAG AACTCAAGGA TAAAAATCTA ACAAAGTACC TGTCTTTTCT ATCCAAGAAG 
AAAAAACCTT ATAACTGGTT AGATTTGATG CCTCGATTTT TGGTTGGTTT GATGTTTCTC 
CAGGATGACC TCTATTTGGG CTCTCTTTCA AATGTGGATG CAAAACAGTC AACCAAGAAA 
CAGAAGACAC TCTTGAAATA CATTAGAAGG CTGCAGATTA ATACTCTCTG TCCAGAGAGG 
CTGCTGGAGC TTTTTCATTG TGTTTATGAA ACACAGAACA ATTACCTTCT GCAGCATGTG 
GCCTTAAGAC TCGAACCAGA CTTGTCTTTT CTGGGCATAG TTCTTATACC ACCTGATGTC 
TATGTACTGC TCTCTATTTT GAAAAGGTCA AGAAAAGAGT TTTCCTTGGA TTTGCGAAAC 
AGCAGCATTG ACATGCAAGG GCTGCAAGCC TTGGTCAGCC TAAGGAACGT GACATCATTC 
AGGGCTTCCC TCAGTGACAC AGTCAGGCTC TGGAAATCTT TAGAACAGAC AAAAGAATAT 
GAACTGCTGA AAGCATCCAC AGAAAAATTT GTTCTTGATC CCTTTAAGGC AAAGACAATG 
AAGGACATCA GCGACCTCTC TGACCTTGTA GAGATGCAGA AGATGATGAA TTGTGCTCAA 
GAAGCATCTG GTTGCACCAG CTATGAAATT CCTGCCATTA GAAACCTCAG AAAACTCGAA 
TTTGCGCTGG GTCCAGCATT TGGCCTCCAA GGATTGCTAA AACTCGTGAA AATTCTCGCA 
GCATTTCCAT CACTTCAGCA TTTAGACCTT GATGCTCTGA GTGAAAATGG CATAGGAGAT 
GAAGGAGCAA AGAGTCTATC TGAAGTCTTT CCAACCCTGA CATCACTGGA AACATTAAAT 
TTATCACAGA ATAAAATAAC AGATCTGGGT GCAGAGAACC TCGCTACCGC TCTCCCTTCC 
TTGTCTTCCT TAAAAACACT AAGCTTGTAC AATAATAACA TTTGTGATTT TGGAGCAGAA 
AATCTGGCAA AGGCTCTTCC TGCAATGACA TCTTTAAGAG TGCTAGATGT TCAGTATAAC 
AAAATAACTG GTGTTGGAGC CCAGCAGCTG ACGGACAGCC TACGAAAATG TCCCCATATA 
AAGAACTTGG TGATGTGGAA TCCCACCATT CCCTATGGAG TTCTTGAACA CCTTCACCAG 
CTGGACTCCA GGATCAGTGT GTAG