Gene Symbol | APOBEC3F |
Entrez Gene ID | 723812 |
Full Name | apolipoprotein B mRNA editing enzyme catalytic subunit 3F |
Gene Type | protein-coding |
Organism | Macaca mulatta(Rhesus monkey) |
ORF » Species Summary » Macaca mulatta » APOBEC3F cDNA ORF clone
Gene Symbol | APOBEC3F |
Entrez Gene ID | 723812 |
Full Name | apolipoprotein B mRNA editing enzyme catalytic subunit 3F |
Gene Type | protein-coding |
Organism | Macaca mulatta(Rhesus monkey) |
mRNA | Protein | Name |
---|---|---|
XM_015150346.1 | XP_015005832.1 | DNA dC->dU-editing enzyme APOBEC-3F isoform X1 |
XM_028827471.1 | XP_028683304.1 | DNA dC->dU-editing enzyme APOBEC-3F isoform X2 |
XM_028827472.1 | XP_028683305.1 | DNA dC->dU-editing enzyme APOBEC-3F isoform X3 |
XM_015150346.2 | XP_015005832.2 | DNA dC->dU-editing enzyme APOBEC-3F isoform X4 |
XM_028827470.1 | XP_028683303.1 | DNA dC->dU-editing enzyme APOBEC-3F isoform X1 |
NM_001042373.1 | NP_001035832.1 | DNA dC->dU-editing enzyme APOBEC-3F |
A new rhesus macaque assembly and annotation for next-generation sequencing analyses.
Zimin AV, Cornish AS, Maudhoo MD, Gibbs RM, Zhang X, Pandey S, Meehan DT, Wipfler K, Bosinger SE, Johnson ZP, Tharp GK, Mar?ais G, Roberts M, Ferguson B, Fox HS, Treangen T, Salzberg SL, Yorke JA, Norgren RB Jr
Biology direct9(1)20(2014 Oct)
T cells target APOBEC3 proteins in human immunodeficiency virus type 1-infected humans and simian immunodeficiency virus-infected Indian rhesus macaques.
Champiat S, Garrison KE, Raposo RA, Burwitz BJ, Reed J, Tandon R, York VA, Newman LP, Nimityongskul FA, Wilson NA, Almeida RR, Martin JN, Deeks SG, Rosenberg MG, Wiznia AA, Spotts GE, Pilcher CD, Hecht FM, Ostrowski MA, Sacha JB, Nixon DF
Journal of virology87(11)6073-80(2013 Jun)
In vivo hypermutation of xenotropic murine leukemia virus-related virus DNA in peripheral blood mononuclear cells of rhesus macaque by APOBEC3 proteins.
Zhang A, Bogerd H, Villinger F, Das Gupta J, Dong B, Klein EA, Hackett J Jr, Schochetman G, Cullen BR, Silverman RH
Virology421(1)28-33(2011 Dec)
Increased APOBEC3G and APOBEC3F expression is associated with low viral load and prolonged survival in simian immunodeficiency virus infected rhesus monkeys.
Mussil B, Sauermann U, Motzkus D, Stahl-Hennig C, Sopper S
Retrovirology877(2011 Sep)
Mutational alteration of human immunodeficiency virus type 1 Vif allows for functional interaction with nonhuman primate APOBEC3G.
Schr?felbauer B, Senger T, Manning G, Landau NR
Journal of virology80(12)5984-91(2006 Jun)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
APOBEC3F/G-specific responses in HIV-1-infected rhesus macaques are CD8+ T cell mediated.
Title: T cells target APOBEC3 proteins in human immunodeficiency virus type 1-infected humans and simian immunodeficiency virus-infected Indian rhesus macaques.
APOBEC3 proteins restrict xenotropic murine leukemia virus-related virus infections in a Macaca mulatta model.
Title: In vivo hypermutation of xenotropic murine leukemia virus-related virus DNA in peripheral blood mononuclear cells of rhesus macaque by APOBEC3 proteins.
Increased APOBEC3G and APOBEC3F expression is associated with low viral load and prolonged survival in simian immunodeficiency virus infected rhesus monkeys.
Title: Increased APOBEC3G and APOBEC3F expression is associated with low viral load and prolonged survival in simian immunodeficiency virus infected rhesus monkeys.
The following APOBEC3F gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the APOBEC3F cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | OMb01436 | |
Clone ID Related Accession (Same CDS sequence) | NM_001042373.1 | |
Accession Version | NM_001042373.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1122bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-04-27 | |
Organism | Macaca mulatta(Rhesus monkey) | |
Product | DNA dC->dU-editing enzyme APOBEC-3F | |
Comment | Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from DQ514917.1. ##Evidence-Data-START## Transcript exon combination :: DQ514917.1 [ECO:0000332] RNAseq introns :: mixed/partial sample support SAMEA4688316, SAMEA4688317 [ECO:0000350] ##Evidence-Data-END## |
1 | ATGCAGCCTC AGTACAGAAA CACAGTGGAG CGAATGTATC GAGGCACATT CTTCTACAAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001035832.1 |
CDS | 1..1122 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001042373.1 |
1 | ATGCAGCCTC AGTACAGAAA CACAGTGGAG CGAATGTATC GAGGCACATT CTTCTACAAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMb41732 | |
Clone ID Related Accession (Same CDS sequence) | XM_015150346.1 | |
Accession Version | XM_015150346.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1155bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2015-12-20 | |
Organism | Macaca mulatta(Rhesus monkey) | |
Product | DNA dC->dU-editing enzyme APOBEC-3F isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_014805257.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Macaca mulatta Annotation Release 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.5 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGATGGGAG CAATGTGGAA TTTTGTTCAC AGAGCTTCGA TGGATTTTCT AAACACAGTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_015005832.1 |
CDS | 343..1497 |
Translation |
Target ORF information:
Target ORF information:
|
XM_015150346.1 |
1 | ATGATGGGAG CAATGTGGAA TTTTGTTCAC AGAGCTTCGA TGGATTTTCT AAACACAGTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMb62048 | |
Clone ID Related Accession (Same CDS sequence) | XM_028827470.1 | |
Accession Version | XM_028827470.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1473bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-04-25 | |
Organism | Macaca mulatta(Rhesus monkey) | |
Product | DNA dC->dU-editing enzyme APOBEC-3F isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_041763.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Macaca mulatta Annotation Release 103 Annotation Version :: 103 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGATGGGAG CAATGTGGAA TTTTGTTCAC AGAGCTTCGA TGGATTTTCT AAACACAGTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_028683303.1 |
CDS | 444..1916 |
Translation |
Target ORF information:
Target ORF information:
|
XM_028827470.1 |
1 | ATGATGGGAG CAATGTGGAA TTTTGTTCAC AGAGCTTCGA TGGATTTTCT AAACACAGTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMb62049 | |
Clone ID Related Accession (Same CDS sequence) | XM_028827471.1 | |
Accession Version | XM_028827471.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1440bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-04-25 | |
Organism | Macaca mulatta(Rhesus monkey) | |
Product | DNA dC->dU-editing enzyme APOBEC-3F isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_041763.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Macaca mulatta Annotation Release 103 Annotation Version :: 103 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGCAGCCTC AGTACAGAAA CACAGTGGAG CGAATGTATC GAGGCACATT CTTCTACAAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_028683304.1 |
CDS | 330..1769 |
Translation |
Target ORF information:
Target ORF information:
|
XM_028827471.1 |
1 | ATGCAGCCTC AGTACAGAAA CACAGTGGAG CGAATGTATC GAGGCACATT CTTCTACAAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMb62050 | |
Clone ID Related Accession (Same CDS sequence) | XM_028827472.1 | |
Accession Version | XM_028827472.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1239bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-04-25 | |
Organism | Macaca mulatta(Rhesus monkey) | |
Product | DNA dC->dU-editing enzyme APOBEC-3F isoform X3 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_041763.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Macaca mulatta Annotation Release 103 Annotation Version :: 103 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGTGCTTCC TCTCTCGGTT CTGTGGCAAC CAGCTGCCTG CTTACAAGCG CTTCCAGATC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_028683305.1 |
CDS | 377..1615 |
Translation |
Target ORF information:
Target ORF information:
|
XM_028827472.1 |
1 | ATGTGCTTCC TCTCTCGGTT CTGTGGCAAC CAGCTGCCTG CTTACAAGCG CTTCCAGATC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMb62051 | |
Clone ID Related Accession (Same CDS sequence) | XM_015150346.2 | |
Accession Version | XM_015150346.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1155bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-04-25 | |
Organism | Macaca mulatta(Rhesus monkey) | |
Product | DNA dC->dU-editing enzyme APOBEC-3F isoform X4 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_041763.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Apr 23, 2019 this sequence version replaced XM_015150346.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Macaca mulatta Annotation Release 103 Annotation Version :: 103 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGATGGGAG CAATGTGGAA TTTTGTTCAC AGAGCTTCGA TGGATTTTCT AAACACAGTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_015005832.2 |
CDS | 444..1598 |
Translation |
Target ORF information:
Target ORF information:
|
XM_015150346.2 |
1 | ATGATGGGAG CAATGTGGAA TTTTGTTCAC AGAGCTTCGA TGGATTTTCT AAACACAGTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
A new rhesus macaque assembly and annotation for next-generation sequencing analyses. |
T cells target APOBEC3 proteins in human immunodeficiency virus type 1-infected humans and simian immunodeficiency virus-infected Indian rhesus macaques. |
In vivo hypermutation of xenotropic murine leukemia virus-related virus DNA in peripheral blood mononuclear cells of rhesus macaque by APOBEC3 proteins. |
Increased APOBEC3G and APOBEC3F expression is associated with low viral load and prolonged survival in simian immunodeficiency virus infected rhesus monkeys. |
Mutational alteration of human immunodeficiency virus type 1 Vif allows for functional interaction with nonhuman primate APOBEC3G. |