Pcdhac1 cDNA ORF clone, Mus musculus(house mouse)

Gene
Clones
gRNAs

Summary

Gene Symbol	Pcdhac1
Entrez Gene ID	353236
Full Name	protocadherin alpha subfamily C, 1
Synonyms	CNRc1
General protein information	Preferred Names protocadherin alpha subfamily C, 1 Names protocadherin alpha-C1 protocadherin alpha C1
Gene Type	protein-coding
Organism	Mus musculus(house mouse)
Genome	Chromosome: 18 Map Location: 18\|18 B2-B3

mRNA and Protein(s)

mRNA	Protein	Name
NM_001003671.1	NP_001003671.1	protocadherin alpha-C1 precursor

Pathways from BioSystems

Homologies

	PCDHAC1	XP_001089425.1
Mus musculus (house mouse)	Pcdhac1	NP_001003671.1
Pan troglodytes (chimpanzee)	PCDHAC1	NP_001076051.1
Homo sapiens (human)	PCDHAC1	NP_061721.2
Rattus norvegicus (Norway rat)	Pcdhac1	NP_955803.1
Gallus gallus (chicken)	CCNRC01	NP_001104600.1

Gene Ontology
Bibliography

Related articles in PubMed

Developmental epigenetic modification regulates stochastic expression of clustered protocadherin genes, generating single neuron diversity.
Toyoda S, Kawaguchi M, Kobayashi T, Tarusawa E, Toyama T, Okano M, Oda M, Nakauchi H, Yoshimura Y, Sanbo M, Hirabayashi M, Hirayama T, Hirabayashi T, Yagi T
Neuron82(1)94-108(2014 Apr)

Toward simpler and faster genome-wide mutagenesis in mice.
Wu S, Ying G, Wu Q, Capecchi MR
Nature genetics39(7)922-30(2007 Jul)

Monoallelic yet combinatorial expression of variable exons of the protocadherin-alpha gene cluster in single neurons.
Esumi S, Kakazu N, Taguchi Y, Hirayama T, Sasaki A, Hirabayashi T, Koide T, Kitsukawa T, Hamada S, Yagi T
Nature genetics37(2)171-6(2005 Feb)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following Pcdhac1 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the Pcdhac1 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)	Select
OMu07981	NM_001003671.1 Latest version!	Mus musculus protocadherin alpha subfamily C, 1 (Pcdhac1), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	12-14	$566.30 $809.00

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** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

Pcdhac1 ( NM_001003671.1 ) cDNA ORF clone, Mus musculus(house mouse) -> NP_001003671.1 Mus musculus protocadherin alpha subfamily C, 1 (Pcdhac1), mRNA.

Price & Availability↑

CloneID	OMu07981
Clone ID Related Accession (Same CDS sequence)	NM_001003671.1
Accession Version	NM_001003671.1 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 2895bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2019-09-10
Organism	Mus musculus(house mouse)
Product	protocadherin alpha-C1 precursor
Comment	Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AY013768.1. ##Evidence-Data-START## Transcript exon combination :: AY013768.1, SRR1660813.43675.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00849387, SAMN01164131 [ECO:0000348] ##Evidence-Data-END##

ATGGTGGGCT GGGGAATGGC GGTTCTGTGT TGGTGGGTCT CTTGTGGTGC TGCAGCGGGA 
CAGCTGGAGT ATTCGGTGTT GGAGGAGACG GAACCGGGAG TTACTGTAGG CAATATCGCC 
TCGGACTTGA AGCTGTCAGC AGCTGTTCTG TCCTTGCGGA ACTTTCGCTT CCTTTCCAAC 
TACAGAGAGT CCTACTTCGG GGTCGACCTG GGCAGCGGTA GCTTGGTGGT TCAAGAGCTA 
GCGGACCGCG AGCAGTTGTG CCCGGCCAAA GCTTCTTGCA TCCTGACATA TGAGCTAATG 
TTTGAGGACC CTCTAGAGCT GCACAAAATA CGTGTTCACC TTCTAGACAC CAACGACAAT 
TCACCTCTCT TCCCTGCTGG AGATGTGCAC TTGCACATCC CGGAGTTCCT GCCACCGGGA 
GCCCGGTTCA TTCTTCCGAA TGCCCAAGAT GCCGATGAGG GAAGCAACGG CGCGCTAAGT 
TACAGCCTAA GCATTAGCCA GCACTTTCGC CTGGACATGG GATCGCGGGT CGATGGTAGC 
AAATACCCAG AGCTGGTGCT AGAGAAAGCG CTGGATCGAG AGCAGCGGGA CACCCACCTG 
CTGGTGCTCA CTGCTCAGGA TGGTGGCCTG CCTGCACGCT CTGGGGCCGC TCAAGTCACT 
ATCACTGTGG TGGACACCAA CGACAATGCA CCTGTATTTG AGCACTCCGT ATACAGTACT 
AAGGTTCCAG AGACTGCACC CAATGGAACT GTGCTATTCC ACGTTCAAGC CTTGGATCCG 
GATGAAGGAT CCAATGGAGA AGTCTGGTAC TCCTTAAGCA ATAGCACACC AGCAGAGCTG 
AGGCACCTCT TTCACGTACA TCCTAAAAGT GGGGAGGTTC AAGTAGCTGC TTCACTAGGT 
CCACCAGAAA CGTTATTGGA AGCATTTGTT GAAGCAAGAG ATGAAGGTGC TTTTAGTCTA 
GCTAGCACTA CTAAACTGCT TGTGGAGGTG ACTGATGTGA ACGATCATGC CCCCCAGATG 
GACTTCATGA CCTTCTCCAG CTCAATACTC GAGGATGCAG CTCCTGGCAC AGTGATTGCT 
CTCCTTAGTG TAAAGGATGA GGACCTAGGT TCCAATGGTA AGGTCACTTG TAGCATGTCC 
AGCAAAGGCC CCTTTCAGTT GAAGGCTTCC TTTGATAGCT ACTACAGACT GCTGACCGAT 
GGGCCCCTGG ATCGGGAGCA AGCAAGTGAA TACCAGATCC TGATCTCTGC TTCAGACGGT 
GGCTCACCCC CATTAAGTAC CCGAAGGACA CTCACTGTGT CAGTTGCTGA TGTGAATGAC 
AACACACCAA ACTTTCCTCA ACCACAACAG GAACTTTTTG TGGCTGAAAA CAATAGCCCT 
GGAGTTTCCT TAGGCGGTGT GTTTGCTCAG GACCCAGATC TGGGGGAGAA TGGCTTTGTC 
TTTTATGAGC TGTTGGATGT CATTTCTGAA CGGATGCCAG TTTCCTCCAG CTTGGTGGCA 
GTGGAACCAA CCACTGGTGT TATCACTGCC AAAACTTCCT TTGACTTTGA GCAGCTCAGG 
GGGTTTAACT TCCAAGTGGA AGGCCGAGAT GGTGGCATTC CTCCCAGAAG TGCAACAGTG 
ACTGTGAACT TGTTTGTGGT AGACAGGAAT GACAATGCAC CAGACATCTT GTTTCCCTTG 
CCTAGAAATG GCTCTATCCC AGTGGAAAGA GTGCCCCGCT TTGCCCGAGC TGGACACCTA 
GTCACAAAAG TGGTAGCAGA GGATGCAGAC AGTGGTTCCA ATGCCTGGCT CTCCTACCAC 
ATTTCTCAGG CTTCTGACTC TAGTCTTTTC AGAATTTCAG TCAACACCGG AGAGCTGCGA 
ACTGCACGTT TAGTGTTTCC CACTGATGCG GTCAAGCAGA GCGTGGTGGT AGTGGTTCAG 
GACCACGGAG AGCCACCGCT TTCCTCCTCT GTTATTCTGG GTGTGCTGTT GAGCAACGCA 
GCTCCTCAGG TCATTCCAGA CTTTGAAGAT ATCTGGGAAC CAAGAGCACA GCTTTCTGCC 
CGGAACTTGT ACTTGATAAT AGCCCTGGTC TGCATTTCCT TTTTATTTCT GGGGTGCTTG 
TTTTTCTTTG TGTGCATCAA GTTGAACCAG AGCCCAGATT GTTGCTCTCA GAACTTCTGT 
CATTCTCCAG AAAATGAGAG ACACAAGAGG ACGATGGCTT CTAGTCCTTG GGTGACATCA 
GCCACAATAG ATGTCACCAC AGTCGAGAGA CTTTCTCAGA CATATCTCTA TCAAGCTTCT 
CTGGGACCTG GTTATGGTAA TAACAGCTTT TTCTTGCATG GGAAATACAA GGCTGCTGAT 
CTGAGAAATC TGGCCCCTGG TGTAGGAATG AATTTGCCAG TATCCTGTGT TCAGATTCGG 
AATAGGAAAG GGGATCATTC AAATGTGGAA GCCGTGCCCC GGCAGCCCAA CCCTGACTGG 
CGCTACTCTG CCTCGCTAAG AGCAGGCATG CACAGCTCTG TGCACCTGGA GGAGGCTGGC 
ATTCTACGGG CTGGTCCAGG AGGGCCTGAT CAGCAGTGGC CAACAGTATC CAGTGCAACA 
CCAGAACCTG AGGCAGGAGA GGTGTCCCCT CCGGTGGGCG CCGGTGTCAA CAGCAACAGC 
TGGACCTTTA AATACGGACC AGGCAACCCC AAACAGTCCG GTCCCGGTGA GTTGCCAGAC 
AAATTCATTA TCCCAGGATC TCCTGCAATC ATCTCCATCC GGCAGGAGCC TGCTAACAAC 
CAAATTGACA AAAGCGATTT TATAACCTTC GGCAAAAAGG AGGAGACCAA GAAAAAGAAG 
AAAAAGAAGA AGGGTAACAA GACCCAGGAG AAAAAAGAGA AAGGGAACAG CACGACGGAC 
AACAGTGACC AGTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_001003671.1
CDS	1..2895
Translation	MVGWGMAVLCWWVSCGAAAGQLEYSVLEETEPGVTVGNIASDLKLSAAVLSLRNFRFLSNYRESYFGVDLGSGSLVVQELADREQLCPAKASCILTYELMFEDPLELHKIRVHLLDTNDNSPLFPAGDVHLHIPEFLPPGARFILPNAQDADEGSNGALSYSLSISQHFRLDMGSRVDGSKYPELVLEKALDREQRDTHLLVLTAQDGGLPARSGAAQVTITVVDTNDNAPVFEHSVYSTKVPETAPNGTVLFHVQALDPDEGSNGEVWYSLSNSTPAELRHLFHVHPKSGEVQVAASLGPPETLLEAFVEARDEGAFSLASTTKLLVEVTDVNDHAPQMDFMTFSSSILEDAAPGTVIALLSVKDEDLGSNGKVTCSMSSKGPFQLKASFDSYYRLLTDGPLDREQASEYQILISASDGGSPPLSTRRTLTVSVADVNDNTPNFPQPQQELFVAENNSPGVSLGGVFAQDPDLGENGFVFYELLDVISERMPVSSSLVAVEPTTGVITAKTSFDFEQLRGFNFQVEGRDGGIPPRSATVTVNLFVVDRNDNAPDILFPLPRNGSIPVERVPRFARAGHLVTKVVAEDADSGSNAWLSYHISQASDSSLFRISVNTGELRTARLVFPTDAVKQSVVVVVQDHGEPPLSSSVILGVLLSNAAPQVIPDFEDIWEPRAQLSARNLYLIIALVCISFLFLGCLFFFVCIKLNQSPDCCSQNFCHSPENERHKRTMASSPWVTSATIDVTTVERLSQTYLYQASLGPGYGNNSFFLHGKYKAADLRNLAPGVGMNLPVSCVQIRNRKGDHSNVEAVPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWPTVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIRQEPANNQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ

Target ORF information:

RefSeq Version	NM_001003671.1
Organism	Mus musculus(house mouse)
Definition	Mus musculus protocadherin alpha subfamily C, 1 (Pcdhac1), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_001003671.1

ORF Insert Sequence:

ATGGTGGGCT GGGGAATGGC GGTTCTGTGT TGGTGGGTCT CTTGTGGTGC TGCAGCGGGA 
CAGCTGGAGT ATTCGGTGTT GGAGGAGACG GAACCGGGAG TTACTGTAGG CAATATCGCC 
TCGGACTTGA AGCTGTCAGC AGCTGTTCTG TCCTTGCGGA ACTTTCGCTT CCTTTCCAAC 
TACAGAGAGT CCTACTTCGG GGTCGACCTG GGCAGCGGTA GCTTGGTGGT TCAAGAGCTA 
GCGGACCGCG AGCAGTTGTG CCCGGCCAAA GCTTCTTGCA TCCTGACATA TGAGCTAATG 
TTTGAGGACC CTCTAGAGCT GCACAAAATA CGTGTTCACC TTCTAGACAC CAACGACAAT 
TCACCTCTCT TCCCTGCTGG AGATGTGCAC TTGCACATCC CGGAGTTCCT GCCACCGGGA 
GCCCGGTTCA TTCTTCCGAA TGCCCAAGAT GCCGATGAGG GAAGCAACGG CGCGCTAAGT 
TACAGCCTAA GCATTAGCCA GCACTTTCGC CTGGACATGG GATCGCGGGT CGATGGTAGC 
AAATACCCAG AGCTGGTGCT AGAGAAAGCG CTGGATCGAG AGCAGCGGGA CACCCACCTG 
CTGGTGCTCA CTGCTCAGGA TGGTGGCCTG CCTGCACGCT CTGGGGCCGC TCAAGTCACT 
ATCACTGTGG TGGACACCAA CGACAATGCA CCTGTATTTG AGCACTCCGT ATACAGTACT 
AAGGTTCCAG AGACTGCACC CAATGGAACT GTGCTATTCC ACGTTCAAGC CTTGGATCCG 
GATGAAGGAT CCAATGGAGA AGTCTGGTAC TCCTTAAGCA ATAGCACACC AGCAGAGCTG 
AGGCACCTCT TTCACGTACA TCCTAAAAGT GGGGAGGTTC AAGTAGCTGC TTCACTAGGT 
CCACCAGAAA CGTTATTGGA AGCATTTGTT GAAGCAAGAG ATGAAGGTGC TTTTAGTCTA 
GCTAGCACTA CTAAACTGCT TGTGGAGGTG ACTGATGTGA ACGATCATGC CCCCCAGATG 
GACTTCATGA CCTTCTCCAG CTCAATACTC GAGGATGCAG CTCCTGGCAC AGTGATTGCT 
CTCCTTAGTG TAAAGGATGA GGACCTAGGT TCCAATGGTA AGGTCACTTG TAGCATGTCC 
AGCAAAGGCC CCTTTCAGTT GAAGGCTTCC TTTGATAGCT ACTACAGACT GCTGACCGAT 
GGGCCCCTGG ATCGGGAGCA AGCAAGTGAA TACCAGATCC TGATCTCTGC TTCAGACGGT 
GGCTCACCCC CATTAAGTAC CCGAAGGACA CTCACTGTGT CAGTTGCTGA TGTGAATGAC 
AACACACCAA ACTTTCCTCA ACCACAACAG GAACTTTTTG TGGCTGAAAA CAATAGCCCT 
GGAGTTTCCT TAGGCGGTGT GTTTGCTCAG GACCCAGATC TGGGGGAGAA TGGCTTTGTC 
TTTTATGAGC TGTTGGATGT CATTTCTGAA CGGATGCCAG TTTCCTCCAG CTTGGTGGCA 
GTGGAACCAA CCACTGGTGT TATCACTGCC AAAACTTCCT TTGACTTTGA GCAGCTCAGG 
GGGTTTAACT TCCAAGTGGA AGGCCGAGAT GGTGGCATTC CTCCCAGAAG TGCAACAGTG 
ACTGTGAACT TGTTTGTGGT AGACAGGAAT GACAATGCAC CAGACATCTT GTTTCCCTTG 
CCTAGAAATG GCTCTATCCC AGTGGAAAGA GTGCCCCGCT TTGCCCGAGC TGGACACCTA 
GTCACAAAAG TGGTAGCAGA GGATGCAGAC AGTGGTTCCA ATGCCTGGCT CTCCTACCAC 
ATTTCTCAGG CTTCTGACTC TAGTCTTTTC AGAATTTCAG TCAACACCGG AGAGCTGCGA 
ACTGCACGTT TAGTGTTTCC CACTGATGCG GTCAAGCAGA GCGTGGTGGT AGTGGTTCAG 
GACCACGGAG AGCCACCGCT TTCCTCCTCT GTTATTCTGG GTGTGCTGTT GAGCAACGCA 
GCTCCTCAGG TCATTCCAGA CTTTGAAGAT ATCTGGGAAC CAAGAGCACA GCTTTCTGCC 
CGGAACTTGT ACTTGATAAT AGCCCTGGTC TGCATTTCCT TTTTATTTCT GGGGTGCTTG 
TTTTTCTTTG TGTGCATCAA GTTGAACCAG AGCCCAGATT GTTGCTCTCA GAACTTCTGT 
CATTCTCCAG AAAATGAGAG ACACAAGAGG ACGATGGCTT CTAGTCCTTG GGTGACATCA 
GCCACAATAG ATGTCACCAC AGTCGAGAGA CTTTCTCAGA CATATCTCTA TCAAGCTTCT 
CTGGGACCTG GTTATGGTAA TAACAGCTTT TTCTTGCATG GGAAATACAA GGCTGCTGAT 
CTGAGAAATC TGGCCCCTGG TGTAGGAATG AATTTGCCAG TATCCTGTGT TCAGATTCGG 
AATAGGAAAG GGGATCATTC AAATGTGGAA GCCGTGCCCC GGCAGCCCAA CCCTGACTGG 
CGCTACTCTG CCTCGCTAAG AGCAGGCATG CACAGCTCTG TGCACCTGGA GGAGGCTGGC 
ATTCTACGGG CTGGTCCAGG AGGGCCTGAT CAGCAGTGGC CAACAGTATC CAGTGCAACA 
CCAGAACCTG AGGCAGGAGA GGTGTCCCCT CCGGTGGGCG CCGGTGTCAA CAGCAACAGC 
TGGACCTTTA AATACGGACC AGGCAACCCC AAACAGTCCG GTCCCGGTGA GTTGCCAGAC 
AAATTCATTA TCCCAGGATC TCCTGCAATC ATCTCCATCC GGCAGGAGCC TGCTAACAAC 
CAAATTGACA AAAGCGATTT TATAACCTTC GGCAAAAAGG AGGAGACCAA GAAAAAGAAG 
AAAAAGAAGA AGGGTAACAA GACCCAGGAG AAAAAAGAGA AAGGGAACAG CACGACGGAC 
AACAGTGACC AGTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PubMed

Developmental epigenetic modification regulates stochastic expression of clustered protocadherin genes, generating single neuron diversity.
Neuron82(1)94-108(2014 Apr)
Toyoda S,Kawaguchi M,Kobayashi T,Tarusawa E,Toyama T,Okano M,Oda M,Nakauchi H,Yoshimura Y,Sanbo M,Hirabayashi M,Hirayama T,Hirabayashi T,Yagi T

Toward simpler and faster genome-wide mutagenesis in mice.
Nature genetics39(7)922-30(2007 Jul)
Wu S,Ying G,Wu Q,Capecchi MR

Monoallelic yet combinatorial expression of variable exons of the protocadherin-alpha gene cluster in single neurons.
Nature genetics37(2)171-6(2005 Feb)
Esumi S,Kakazu N,Taguchi Y,Hirayama T,Sasaki A,Hirabayashi T,Koide T,Kitsukawa T,Hamada S,Yagi T

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Pcdhac1 cDNA ORF clone, Mus musculus(house mouse)

Gene

Clones

gRNAs

Related articles in PubMed

Target ORF information:

Target ORF information:

ORF Insert Sequence:

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