Pcdhac1 cDNA ORF clone, Rattus norvegicus(Norway rat)

Gene
Clones
gRNAs

Summary

Gene Symbol	Pcdhac1
Entrez Gene ID	393091
Full Name	protocadherin alpha subfamily C, 1
Synonyms	rCNRvc1
General protein information	Preferred Names protocadherin alpha subfamily C, 1 Names protocadherin alpha-C1 cadherin-related neuronal receptor c1 protocadherin alpha c1
Gene Type	protein-coding
Organism	Rattus norvegicus(Norway rat)
Genome	Chromosome: 18 Map Location: 18p11
Summary	member of the CNR/Pcdhalpha family of proteins which are thought to have a role in synaptic formation and stabilization [RGD, Feb 2006].

mRNA and Protein(s)

mRNA	Protein	Name
NM_199509.1	NP_955803.1	protocadherin alpha-C1 precursor

Pathways from BioSystems

Homologies

	PCDHAC1	XP_001089425.1
Mus musculus (house mouse)	Pcdhac1	NP_001003671.1
Pan troglodytes (chimpanzee)	PCDHAC1	NP_001076051.1
Homo sapiens (human)	PCDHAC1	NP_061721.2
Rattus norvegicus (Norway rat)	Pcdhac1	NP_955803.1
Gallus gallus (chicken)	CCNRC01	NP_001104600.1

Gene Ontology
Bibliography

Related articles in PubMed

Sequence analysis and expression mapping of the rat clustered protocadherin gene repertoires.
Zou C, Huang W, Ying G, Wu Q
Neuroscience144(2)579-603(2007 Jan)

Comparative genomics and diversifying selection of the clustered vertebrate protocadherin genes.
Wu Q
Genetics169(4)2179-88(2005 Apr)

Genomic sequence and organization of the family of CNR/Pcdhalpha genes in rat.
Yanase H, Sugino H, Yagi T
Genomics83(4)717-26(2004 Apr)

Multiple variable first exons: a mechanism for cell- and tissue-specific gene regulation.
Zhang T, Haws P, Wu Q
Genome research14(1)79-89(2004 Jan)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following Pcdhac1 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the Pcdhac1 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)	Select
ORa05411	NM_199509.1 Latest version!	Rattus norvegicus protocadherin alpha subfamily C, 1 (Pcdhac1), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	12-14	$566.30 $809.00

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** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

Pcdhac1 ( NM_199509.1 ) cDNA ORF clone, Rattus norvegicus(Norway rat) -> NP_955803.1 Rattus norvegicus protocadherin alpha subfamily C, 1 (Pcdhac1), mRNA.

Price & Availability↑

CloneID	ORa05411
Clone ID Related Accession (Same CDS sequence)	NM_199509.1
Accession Version	NM_199509.1 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 2895bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2014-08-09
Organism	Rattus norvegicus(Norway rat)
Product	protocadherin alpha-C1 precursor
Comment	Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AB113397.1. ##Evidence-Data-START## Transcript exon combination :: AB113397.1, AY573984.1 [ECO:0000332] ##Evidence-Data-END##

ATGGTGGGCT GGGGGATGGC AGTTTTGTGC TGGTGGGTCT CTTGTGGTGC TGCAGCGGGA 
CAGCTGGAGT ACTCGGTGTT GGAGGAGACG GAACCCGGAG TTACTGTAGG CAATATCGTC 
TCGGACTTGA AGCTGTCAGC AGCTGCTCTG TCCTTGCGGA ACTTTCGCTT CCTTTCCAAC 
CACAGAGAGC CCTACTTCGG GGTGGACCTG GGCAGCGGTA GCTTGGTGGT TCAAGAACCA 
GCGGACCGCG AGCGGCTGTG CGGGACCAAA GCTGCCTGTA TCCTGACATA CGAGCTAATG 
TTCGAGGACC CTCTGGAGCT GCACAAAATG CGCGTTCGCC TCCTAGACAC CAACGACAAT 
TCACCCATCT TCCCTGCTGG AGATGTGCAC CTGCACATCC CGGAGTTTCT GCCACCCGGA 
TCCCGGTTCA TTCTTCCGAG TGCCCAAGAT GCTGATGTGG GAAGCAACGG GGCACTAAGT 
TACAGCCTAA GCATTAGCCA ACACTTTCAC CTGGATATGG GGTCACGGGT CGATGGTAGC 
AAATACCCAG AGTTGGTGCT GGAGAAAGCA CTGGATCGAG AGCAACGGGA CACCCACCTG 
CTGGTGCTTA CTGCTCATGA TGGTGGCCTG CCTGCACGCT CTGGAGCTGC TCAAGTCACT 
ATCACTGTGG TGGACACCAA TGACAATGCA CCTGTATTTG AGCACTCCGT ATATAGTACC 
AAGGTTCCAG AGACTGCACC CAATGGAACT GTGCTATTCC ACGTTCAAGC CTTGGATCCG 
GATGAAGGAT CCAATGGAGA AGTCTGGTAC TCCTTAAGCA ATAGCACACC AGCAGAGCTG 
AGGCACCTCT TTCACGTGCA TCCTAAAAGT GGGGAGGTCC AGGTAGCTGC TACACTAGGT 
CCACCAGAAA CGTTGTTGGA AGCATTTATT GAAGCAAGAG ATGAAGGGAC TTTTAGCTTA 
GCTAGCACTA CTAAACTGCT TGTGGAGGTG ACTGATGTGA ACGATCATGC CCCCCAGATA 
GAGTTCATGA CCTTCTTGAG CTCAGTACTT GAGGATGCAG CTCCTGGCAC AGTAATTGCT 
CTCCTGAGTG TTAAGGACGA GGACCTGGGT TCCAATGGTA AGGTCACTTG TAGCATGTCC 
AGCAAAGGCC CATTTCAGTT GAAGGCTTCC TTTGATAGCT ACTACAAGTT GCTGACTGAT 
GGGCCCTTGG ATCGGGAGCG AGCAAGTGAA TACCAGATCC TAATCGCTGC TTCAGATGGC 
GGCTCACCCC CATTAAGCAC CAGAAGGACA CTCACTGTGT CTGTTGCTGA TGTGAACGAT 
AACACACCAA GCTTTCCTCA ACCACAACAG GAACTTTTTG TGGTTGAAAA CAATAGTCCC 
GGAGTTTCTT TAGGCAGTGT GTTTGCTCAG GACCCAGATC TGGGGGAGAA TGGCCTTGTC 
TTGTATGAGC TGTTGGATGT CATTTCTGAA GGGATGCCAC TTCCCTCCAG CTTGGTGTCA 
GTGGAACCAA CCAGTGGTGT TATCACTGCC AAAAATTCCT TTGACTTTGA ACAGCTCAGG 
GGTTTTCACT TCCAAGTGGA AGGCCGAGAT GGTGGCATTC CTCCCAGAAG TGCAACAGTG 
ACTGTGAACT TGTTTGTGGT AGACAGGAAT GACAACGCTC CAGACATCTT GTTTCCCTTG 
CCTAGAAATG GCTCTATCCC GGTGGAAAGA GTGTCCCGCT CTGCCCGAGC TGAACACCTG 
GTCACAAAAG TGGTAGCAGA GGATGCAGAC AGTGGTTCCA ATGCCTGGCT CTCCTACCAC 
ATCTCTCAGG CTTCTGACTC TAGTCTTTTC AGAATTTCAG TCAACACGGG AGAGCTGCGT 
ACTGCACGTT TAGTTTTTCC CACTGATGCT GTTAAGCAGA GCGTGGTGGT AGTGGTTCAG 
GACCACGGAG AGCCACCGCT TTCTTCCTCT GTTACTCTGG GTGTACTGTT GAGCAATGCT 
GCTCCTCAGG TCTTTCCAGA CTTTGAAGAC ATCTGGGAAC CAGGAACACA GCTTTCTGCC 
CGGAACTTGT ACTTGGTAAT AGCCCTGGTC TGCATTTCCT TTTTATTTCT GGGGTGCTTG 
TTTTTCTTTG TGTGCTTCAA GTCGAACCAG AGCCCAGATT GTTGCTCTCA GAGCTTCTGT 
CATTCTCCAG AAAATGTGAG ACACGAGAGG ACGATGGCTT CTAGTCATTG TGTGACATCA 
GCCACAATAG ATGTCACCGC AGTCGAGAGA CTTTGTCAGA CACATCTCTA TCAAGCCTCT 
CTGGGACCTG GTTATGGTAG TAACAGCTTG CTCTTGCATG GGAAATACCA GGTTGCTGAT 
CTGAGAAATC TGGCCCCTGG TATAGGACTG AATTTGCCAA TATCCTGTAT TCAGATTCGG 
AATAGGAAAG GGGATCATAC AAATGTGAAT GCCATGCCCC GACAGCCCAA CCCTGACTGG 
CGCTACTCTG CCTCGCTAAG AGCCGGCATG CACAGCTCTG TGCACCTGGA GGAGGCTGGC 
ATTCTACGGG CTGGTCCAGG AGGGCCTGAT CAACAGTGGC CAACAGTATC CAGTGCAACA 
CCAGAACCAG AGGCAGGAGA GGTGTCCCCT CCAGTGGGCG CTGGTGTCAA CAGCAACAGC 
TGGACCTTTA AATACGGACC CGGCAACCCC AAACAGCCCG GTCCCGGTGA GTTGCCAGAC 
AAATTCATTA TCCCAGGATC TCCTGCAATC ATCTCCATCC GGCAGGAGTC TGCTAACAAC 
CAAATTGACA AAAGCGATTT TATAACCTTC GGCAAAAAGG AGGAGACCAA GAAAAAGAAG 
AAAAAGAAGA AGGGTAACAA GACCCAGGAG AAAAAAGAGA AAGGGAACAG CACGACGGAC 
AACAGTGACC AGTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_955803.1
CDS	1..2895
Translation	MVGWGMAVLCWWVSCGAAAGQLEYSVLEETEPGVTVGNIVSDLKLSAAALSLRNFRFLSNHREPYFGVDLGSGSLVVQEPADRERLCGTKAACILTYELMFEDPLELHKMRVRLLDTNDNSPIFPAGDVHLHIPEFLPPGSRFILPSAQDADVGSNGALSYSLSISQHFHLDMGSRVDGSKYPELVLEKALDREQRDTHLLVLTAHDGGLPARSGAAQVTITVVDTNDNAPVFEHSVYSTKVPETAPNGTVLFHVQALDPDEGSNGEVWYSLSNSTPAELRHLFHVHPKSGEVQVAATLGPPETLLEAFIEARDEGTFSLASTTKLLVEVTDVNDHAPQIEFMTFLSSVLEDAAPGTVIALLSVKDEDLGSNGKVTCSMSSKGPFQLKASFDSYYKLLTDGPLDRERASEYQILIAASDGGSPPLSTRRTLTVSVADVNDNTPSFPQPQQELFVVENNSPGVSLGSVFAQDPDLGENGLVLYELLDVISEGMPLPSSLVSVEPTSGVITAKNSFDFEQLRGFHFQVEGRDGGIPPRSATVTVNLFVVDRNDNAPDILFPLPRNGSIPVERVSRSARAEHLVTKVVAEDADSGSNAWLSYHISQASDSSLFRISVNTGELRTARLVFPTDAVKQSVVVVVQDHGEPPLSSSVTLGVLLSNAAPQVFPDFEDIWEPGTQLSARNLYLVIALVCISFLFLGCLFFFVCFKSNQSPDCCSQSFCHSPENVRHERTMASSHCVTSATIDVTAVERLCQTHLYQASLGPGYGSNSLLLHGKYQVADLRNLAPGIGLNLPISCIQIRNRKGDHTNVNAMPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWPTVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQPGPGELPDKFIIPGSPAIISIRQESANNQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ

Target ORF information:

RefSeq Version	NM_199509.1
Organism	Rattus norvegicus(Norway rat)
Definition	Rattus norvegicus protocadherin alpha subfamily C, 1 (Pcdhac1), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_199509.1

ORF Insert Sequence:

ATGGTGGGCT GGGGGATGGC AGTTTTGTGC TGGTGGGTCT CTTGTGGTGC TGCAGCGGGA 
CAGCTGGAGT ACTCGGTGTT GGAGGAGACG GAACCCGGAG TTACTGTAGG CAATATCGTC 
TCGGACTTGA AGCTGTCAGC AGCTGCTCTG TCCTTGCGGA ACTTTCGCTT CCTTTCCAAC 
CACAGAGAGC CCTACTTCGG GGTGGACCTG GGCAGCGGTA GCTTGGTGGT TCAAGAACCA 
GCGGACCGCG AGCGGCTGTG CGGGACCAAA GCTGCCTGTA TCCTGACATA CGAGCTAATG 
TTCGAGGACC CTCTGGAGCT GCACAAAATG CGCGTTCGCC TCCTAGACAC CAACGACAAT 
TCACCCATCT TCCCTGCTGG AGATGTGCAC CTGCACATCC CGGAGTTTCT GCCACCCGGA 
TCCCGGTTCA TTCTTCCGAG TGCCCAAGAT GCTGATGTGG GAAGCAACGG GGCACTAAGT 
TACAGCCTAA GCATTAGCCA ACACTTTCAC CTGGATATGG GGTCACGGGT CGATGGTAGC 
AAATACCCAG AGTTGGTGCT GGAGAAAGCA CTGGATCGAG AGCAACGGGA CACCCACCTG 
CTGGTGCTTA CTGCTCATGA TGGTGGCCTG CCTGCACGCT CTGGAGCTGC TCAAGTCACT 
ATCACTGTGG TGGACACCAA TGACAATGCA CCTGTATTTG AGCACTCCGT ATATAGTACC 
AAGGTTCCAG AGACTGCACC CAATGGAACT GTGCTATTCC ACGTTCAAGC CTTGGATCCG 
GATGAAGGAT CCAATGGAGA AGTCTGGTAC TCCTTAAGCA ATAGCACACC AGCAGAGCTG 
AGGCACCTCT TTCACGTGCA TCCTAAAAGT GGGGAGGTCC AGGTAGCTGC TACACTAGGT 
CCACCAGAAA CGTTGTTGGA AGCATTTATT GAAGCAAGAG ATGAAGGGAC TTTTAGCTTA 
GCTAGCACTA CTAAACTGCT TGTGGAGGTG ACTGATGTGA ACGATCATGC CCCCCAGATA 
GAGTTCATGA CCTTCTTGAG CTCAGTACTT GAGGATGCAG CTCCTGGCAC AGTAATTGCT 
CTCCTGAGTG TTAAGGACGA GGACCTGGGT TCCAATGGTA AGGTCACTTG TAGCATGTCC 
AGCAAAGGCC CATTTCAGTT GAAGGCTTCC TTTGATAGCT ACTACAAGTT GCTGACTGAT 
GGGCCCTTGG ATCGGGAGCG AGCAAGTGAA TACCAGATCC TAATCGCTGC TTCAGATGGC 
GGCTCACCCC CATTAAGCAC CAGAAGGACA CTCACTGTGT CTGTTGCTGA TGTGAACGAT 
AACACACCAA GCTTTCCTCA ACCACAACAG GAACTTTTTG TGGTTGAAAA CAATAGTCCC 
GGAGTTTCTT TAGGCAGTGT GTTTGCTCAG GACCCAGATC TGGGGGAGAA TGGCCTTGTC 
TTGTATGAGC TGTTGGATGT CATTTCTGAA GGGATGCCAC TTCCCTCCAG CTTGGTGTCA 
GTGGAACCAA CCAGTGGTGT TATCACTGCC AAAAATTCCT TTGACTTTGA ACAGCTCAGG 
GGTTTTCACT TCCAAGTGGA AGGCCGAGAT GGTGGCATTC CTCCCAGAAG TGCAACAGTG 
ACTGTGAACT TGTTTGTGGT AGACAGGAAT GACAACGCTC CAGACATCTT GTTTCCCTTG 
CCTAGAAATG GCTCTATCCC GGTGGAAAGA GTGTCCCGCT CTGCCCGAGC TGAACACCTG 
GTCACAAAAG TGGTAGCAGA GGATGCAGAC AGTGGTTCCA ATGCCTGGCT CTCCTACCAC 
ATCTCTCAGG CTTCTGACTC TAGTCTTTTC AGAATTTCAG TCAACACGGG AGAGCTGCGT 
ACTGCACGTT TAGTTTTTCC CACTGATGCT GTTAAGCAGA GCGTGGTGGT AGTGGTTCAG 
GACCACGGAG AGCCACCGCT TTCTTCCTCT GTTACTCTGG GTGTACTGTT GAGCAATGCT 
GCTCCTCAGG TCTTTCCAGA CTTTGAAGAC ATCTGGGAAC CAGGAACACA GCTTTCTGCC 
CGGAACTTGT ACTTGGTAAT AGCCCTGGTC TGCATTTCCT TTTTATTTCT GGGGTGCTTG 
TTTTTCTTTG TGTGCTTCAA GTCGAACCAG AGCCCAGATT GTTGCTCTCA GAGCTTCTGT 
CATTCTCCAG AAAATGTGAG ACACGAGAGG ACGATGGCTT CTAGTCATTG TGTGACATCA 
GCCACAATAG ATGTCACCGC AGTCGAGAGA CTTTGTCAGA CACATCTCTA TCAAGCCTCT 
CTGGGACCTG GTTATGGTAG TAACAGCTTG CTCTTGCATG GGAAATACCA GGTTGCTGAT 
CTGAGAAATC TGGCCCCTGG TATAGGACTG AATTTGCCAA TATCCTGTAT TCAGATTCGG 
AATAGGAAAG GGGATCATAC AAATGTGAAT GCCATGCCCC GACAGCCCAA CCCTGACTGG 
CGCTACTCTG CCTCGCTAAG AGCCGGCATG CACAGCTCTG TGCACCTGGA GGAGGCTGGC 
ATTCTACGGG CTGGTCCAGG AGGGCCTGAT CAACAGTGGC CAACAGTATC CAGTGCAACA 
CCAGAACCAG AGGCAGGAGA GGTGTCCCCT CCAGTGGGCG CTGGTGTCAA CAGCAACAGC 
TGGACCTTTA AATACGGACC CGGCAACCCC AAACAGCCCG GTCCCGGTGA GTTGCCAGAC 
AAATTCATTA TCCCAGGATC TCCTGCAATC ATCTCCATCC GGCAGGAGTC TGCTAACAAC 
CAAATTGACA AAAGCGATTT TATAACCTTC GGCAAAAAGG AGGAGACCAA GAAAAAGAAG 
AAAAAGAAGA AGGGTAACAA GACCCAGGAG AAAAAAGAGA AAGGGAACAG CACGACGGAC 
AACAGTGACC AGTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PubMed

Sequence analysis and expression mapping of the rat clustered protocadherin gene repertoires.
Neuroscience144(2)579-603(2007 Jan)
Zou C,Huang W,Ying G,Wu Q

Comparative genomics and diversifying selection of the clustered vertebrate protocadherin genes.
Genetics169(4)2179-88(2005 Apr)
Wu Q

Genomic sequence and organization of the family of CNR/Pcdhalpha genes in rat.
Genomics83(4)717-26(2004 Apr)
Yanase H,Sugino H,Yagi T

Multiple variable first exons: a mechanism for cell- and tissue-specific gene regulation.
Genome research14(1)79-89(2004 Jan)
Zhang T,Haws P,Wu Q

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Pcdhac1 cDNA ORF clone, Rattus norvegicus(Norway rat)

Gene

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gRNAs

Related articles in PubMed

Target ORF information:

Target ORF information:

ORF Insert Sequence:

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