Gene Symbol | MMP28 |
Entrez Gene ID | 574250 |
Full Name | matrix metallopeptidase 28 |
Gene Type | protein-coding |
Organism | Macaca mulatta(Rhesus monkey) |
ORF » Species Summary » Macaca mulatta » MMP28 cDNA ORF clone
Gene Symbol | MMP28 |
Entrez Gene ID | 574250 |
Full Name | matrix metallopeptidase 28 |
Gene Type | protein-coding |
Organism | Macaca mulatta(Rhesus monkey) |
mRNA | Protein | Name |
---|---|---|
XM_015119023.2 | XP_014974509.1 | matrix metalloproteinase-28 isoform X1 |
XM_028835451.1 | XP_028691284.1 | matrix metalloproteinase-28 isoform X3 |
NM_001278395.2 | NP_001265324.1 | matrix metalloproteinase-28 isoform 1 precursor |
XM_015119023.1 | XP_014974509.1 | matrix metalloproteinase-28 isoform X1 |
XM_015119024.2 | XP_014974510.1 | matrix metalloproteinase-28 isoform X2 |
NM_001278396.1 | NP_001265325.1 | matrix metalloproteinase-28 isoform 2 precursor |
NM_001278396.2 | NP_001265325.1 | matrix metalloproteinase-28 isoform 2 precursor |
NM_001278395.1 | NP_001265324.1 | matrix metalloproteinase-28 isoform 1 precursor |
XM_015119024.1 | XP_014974510.1 | matrix metalloproteinase-28 isoform X2 |
MMP28 | XP_001114445.2 | |
Canis lupus familiaris (dog) | MMP28 | XP_548256.2 |
Mus musculus (house mouse) | Mmp28 | NP_536701.1 |
Danio rerio (zebrafish) | LOC100005670 | XP_001337581.3 |
Homo sapiens (human) | MMP28 | NP_077278.1 |
Bos taurus (cattle) | MMP28 | XP_002695695.3 |
Gallus gallus (chicken) | MMP28 | XP_415771.4 |
Rattus norvegicus (Norway rat) | Mmp28 | NP_001073357.1 |
Rattus norvegicus (Norway rat) | LOC100912318 | XP_003750927.1 |
Xenopus tropicalis (tropical clawed frog) | mmp28 | XP_002933877.2 |
A new rhesus macaque assembly and annotation for next-generation sequencing analyses.
Zimin AV, Cornish AS, Maudhoo MD, Gibbs RM, Zhang X, Pandey S, Meehan DT, Wipfler K, Bosinger SE, Johnson ZP, Tharp GK, Mar?ais G, Roberts M, Ferguson B, Fox HS, Treangen T, Salzberg SL, Yorke JA, Norgren RB Jr
Biology direct9(1)20(2014 Oct)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following MMP28 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the MMP28 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | OMb04547 | |
Clone ID Related Accession (Same CDS sequence) | NM_001278395.2 , NM_001278395.1 | |
Accession Version | NM_001278395.1 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1563bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2015-03-24 | |
Organism | Macaca mulatta(Rhesus monkey) | |
Product | matrix metalloproteinase-28 isoform 1 precursor | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AANU01121670.1. On or before Jun 2, 2013 this sequence version replaced XM_002800377.1, XM_001114445.2. Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1). Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on transcript alignments and orthologous data. ##Evidence-Data-START## RNAseq introns :: single sample supports all introns SRS214016, SRS214020 [ECO:0000348] ##Evidence-Data-END## ##RefSeq-Attributes-START## inferred exon combination :: based on alignments, homology ##RefSeq-Attributes-END## |
1 | ATGGTCGCGC GCGTCGGCCT CCTGCTGCGC GCCCTGCCGC TGCTGCTGTG GGACCGCCTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001265324.1 |
CDS | 131..1693 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001278395.1 |
1 | ATGGTCGCGC GCGTCGGCCT CCTGCTGCGC GCCCTGCCGC TGCTGCTGTG GGACCGCCTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMb04549 | |
Clone ID Related Accession (Same CDS sequence) | NM_001278396.1 , NM_001278396.2 | |
Accession Version | NM_001278396.1 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1533bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2015-03-24 | |
Organism | Macaca mulatta(Rhesus monkey) | |
Product | matrix metalloproteinase-28 isoform 2 precursor | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AANU01121670.1. Transcript Variant: This variant (2) uses an alternate in-frame splice site in the 3' coding region, compared to variant 1. It encodes isoform 2 which is shorter than isoform 1. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on transcript alignments and orthologous data. ##Evidence-Data-START## RNAseq introns :: mixed/partial sample support SRS211172, SRS211174 [ECO:0000350] ##Evidence-Data-END## ##RefSeq-Attributes-START## inferred exon combination :: based on alignments, homology ##RefSeq-Attributes-END## |
1 | ATGGTCGCGC GCGTCGGCCT CCTGCTGCGC GCCCTGCCGC TGCTGCTGTG GGACCGCCTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001265325.1 |
CDS | 131..1663 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001278396.1 |
1 | ATGGTCGCGC GCGTCGGCCT CCTGCTGCGC GCCCTGCCGC TGCTGCTGTG GGACCGCCTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMb72025 | |
Clone ID Related Accession (Same CDS sequence) | XM_028835451.1 | |
Accession Version | XM_028835451.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1395bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-04-25 | |
Organism | Macaca mulatta(Rhesus monkey) | |
Product | matrix metalloproteinase-28 isoform X3 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_041769.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Macaca mulatta Annotation Release 103 Annotation Version :: 103 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGACTCGTC CCCGCTGCGG GGTTGCAGAT ACCAACAGTT ATGCGGTCTG GGCTGAGAGG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_028691284.1 |
CDS | 323..1717 |
Translation |
Target ORF information:
Target ORF information:
|
XM_028835451.1 |
1 | ATGACTCGTC CCCGCTGCGG GGTTGCAGAT ACCAACAGTT ATGCGGTCTG GGCTGAGAGG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMb04547 | |
Clone ID Related Accession (Same CDS sequence) | NM_001278395.2 , NM_001278395.1 | |
Accession Version | NM_001278395.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1563bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-12-17 | |
Organism | Macaca mulatta(Rhesus monkey) | |
Product | matrix metalloproteinase-28 isoform 1 precursor | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from QNVO02000160.1. On Dec 18, 2019 this sequence version replaced NM_001278395.1. Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1). Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on transcript alignments and orthologous data. ##Evidence-Data-START## Transcript exon combination :: SRR5038768.867971.1, SRR5038768.359296.1 [ECO:0000332] RNAseq introns :: mixed/partial sample support SAMEA4688315, SAMEA4688316 [ECO:0000350] ##Evidence-Data-END## |
1 | ATGGTCGCGC GCGTCGGCCT CCTGCTGCGC GCCCTGCCGC TGCTGCTGTG GGACCGCCTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001265324.1 |
CDS | 133..1695 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001278395.2 |
1 | ATGGTCGCGC GCGTCGGCCT CCTGCTGCGC GCCCTGCCGC TGCTGCTGTG GGACCGCCTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMb04549 | |
Clone ID Related Accession (Same CDS sequence) | NM_001278396.1 , NM_001278396.2 | |
Accession Version | NM_001278396.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1533bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-12-17 | |
Organism | Macaca mulatta(Rhesus monkey) | |
Product | matrix metalloproteinase-28 isoform 2 precursor | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from QNVO02000160.1. On Dec 18, 2019 this sequence version replaced NM_001278396.1. Transcript Variant: This variant (2) uses an alternate in-frame splice site in the 3' coding region, compared to variant 1. It encodes isoform 2 which is shorter than isoform 1. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on transcript alignments and orthologous data. ##Evidence-Data-START## RNAseq introns :: mixed/partial sample support SAMEA4688315, SAMEA4688316 [ECO:0000350] ##Evidence-Data-END## ##RefSeq-Attributes-START## inferred exon combination :: based on alignments, homology ##RefSeq-Attributes-END## |
1 | ATGGTCGCGC GCGTCGGCCT CCTGCTGCGC GCCCTGCCGC TGCTGCTGTG GGACCGCCTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001265325.1 |
CDS | 133..1665 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001278396.2 |
1 | ATGGTCGCGC GCGTCGGCCT CCTGCTGCGC GCCCTGCCGC TGCTGCTGTG GGACCGCCTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMb50260 | |
Clone ID Related Accession (Same CDS sequence) | XM_015119023.2 , XM_015119023.1 | |
Accession Version | XM_015119023.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1650bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-04-25 | |
Organism | Macaca mulatta(Rhesus monkey) | |
Product | matrix metalloproteinase-28 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_041769.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Apr 23, 2019 this sequence version replaced XM_015119023.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Macaca mulatta Annotation Release 103 Annotation Version :: 103 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGTCGCGC GCGTCGGCCT CCTGCTGCGC GCCCTGCCGC TGCTGCTGTG GGACCGCCTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_014974509.1 |
CDS | 326..1975 |
Translation |
Target ORF information:
Target ORF information:
|
XM_015119023.2 |
1 | ATGGTCGCGC GCGTCGGCCT CCTGCTGCGC GCCCTGCCGC TGCTGCTGTG GGACCGCCTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMb50260 | |
Clone ID Related Accession (Same CDS sequence) | XM_015119023.2 , XM_015119023.1 | |
Accession Version | XM_015119023.1 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1650bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2015-12-20 | |
Organism | Macaca mulatta(Rhesus monkey) | |
Product | matrix metalloproteinase-28 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_014805560.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Macaca mulatta Annotation Release 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.5 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGTCGCGC GCGTCGGCCT CCTGCTGCGC GCCCTGCCGC TGCTGCTGTG GGACCGCCTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_014974509.1 |
CDS | 323..1972 |
Translation |
Target ORF information:
Target ORF information:
|
XM_015119023.1 |
1 | ATGGTCGCGC GCGTCGGCCT CCTGCTGCGC GCCCTGCCGC TGCTGCTGTG GGACCGCCTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMb50261 | |
Clone ID Related Accession (Same CDS sequence) | XM_015119024.2 , XM_015119024.1 | |
Accession Version | XM_015119024.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1638bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-04-25 | |
Organism | Macaca mulatta(Rhesus monkey) | |
Product | matrix metalloproteinase-28 isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_041769.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Apr 23, 2019 this sequence version replaced XM_015119024.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Macaca mulatta Annotation Release 103 Annotation Version :: 103 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGTTGCAGA TGAGAAGACA GAATTCACTT GACCTAGGTC GTACAGCTAG TAAACGGCCA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_014974510.1 |
CDS | 732..2369 |
Translation |
Target ORF information:
Target ORF information:
|
XM_015119024.2 |
1 | ATGTTGCAGA TGAGAAGACA GAATTCACTT GACCTAGGTC GTACAGCTAG TAAACGGCCA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMb50261 | |
Clone ID Related Accession (Same CDS sequence) | XM_015119024.2 , XM_015119024.1 | |
Accession Version | XM_015119024.1 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1638bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2015-12-20 | |
Organism | Macaca mulatta(Rhesus monkey) | |
Product | matrix metalloproteinase-28 isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_014805560.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Macaca mulatta Annotation Release 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.5 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGTTGCAGA TGAGAAGACA GAATTCACTT GACCTAGGTC GTACAGCTAG TAAACGGCCA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_014974510.1 |
CDS | 595..2232 |
Translation |
Target ORF information:
Target ORF information:
|
XM_015119024.1 |
1 | ATGTTGCAGA TGAGAAGACA GAATTCACTT GACCTAGGTC GTACAGCTAG TAAACGGCCA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
A new rhesus macaque assembly and annotation for next-generation sequencing analyses. |