SDCBP2 cDNA ORF clone, Homo sapiens(human)

Gene
Clones
gRNAs

Summary

Gene Symbol	SDCBP2
Entrez Gene ID	27111
Full Name	syndecan binding protein 2
Synonyms	SITAC,SITAC18,ST-2,ST2
General protein information	Preferred Names syndecan binding protein 2 Names syntenin-2 syndecan binding protein (syntenin) 2
Gene Type	protein-coding
Organism	Homo sapiens(human)
Genome	Chromosome: 20 Map Location: 20p13
Summary	The protein encoded by this gene contains two class II PDZ domains. PDZ domains facilitate protein-protein interactions by binding to the cytoplasmic C-terminus of transmembrane proteins, and PDZ-containing proteins mediate cell signaling and the organization of protein complexes. The encoded protein binds to phosphatidylinositol 4, 5-bisphosphate (PIP2) and plays a role in nuclear PIP2 organization and cell division. Alternatively spliced transcript variants encoding multiple isoforms have been observed for this gene. Read-through transcription also exists between this gene and the upstream FKBP1A (FK506 binding protein 1A, 12kDa) gene, as represented in GeneID:100528031. [provided by RefSeq, Sep 2011].
Disorder MIM:	617358

mRNA and Protein(s)

mRNA	Protein	Name
NM_001199784.1	NP_001186713.1	syntenin-2 isoform a
NM_080489.4	NP_536737.3	syntenin-2 isoform a
NM_080489.5	NP_536737.3	syntenin-2 isoform a
NM_015685.5	NP_056500.2	syntenin-2 isoform b

Pathways from BioSystems

Homologies

Canis lupus familiaris (dog)	SDCBP2	XP_542935.2
Bos taurus (cattle)	SDCBP2	XP_003586853.2
Homo sapiens (human)	SDCBP2	NP_001186713.1
	SDCBP2	XP_001112943.1
Mus musculus (house mouse)	Sdcbp2	NP_663510.1
Rattus norvegicus (Norway rat)	Sdcbp2	NP_001020863.1
Gallus gallus (chicken)	LOC100859439	XP_003642536.2
Pan troglodytes (chimpanzee)	SDCBP2	XP_003316850.1

Gene Ontology
Bibliography

Related articles in PubMed

Pooled-matrix protein interaction screens using Barcode Fusion Genetics.
Yachie N, Petsalaki E, Mellor JC, Weile J, Jacob Y, Verby M, Ozturk SB, Li S, Cote AG, Mosca R, Knapp JJ, Ko M, Yu A, Gebbia M, Sahni N, Yi S, Tyagi T, Sheykhkarimli D, Roth JF, Wong C, Musa L, Snider J, Liu YC, Yu H, Braun P, Stagljar I, Hao T, Calderwood MA, Pelletier L, Aloy P, Hill DE, Vidal M, Roth FP
Molecular systems biology12(4)863(2016 Apr)

An inter-species protein-protein interaction network across vast evolutionary distance.
Zhong Q, Pevzner SJ, Hao T, Wang Y, Mosca R, Menche J, Taipale M, Ta?an M, Fan C, Yang X, Haley P, Murray RR, Mer F, Gebreab F, Tam S, MacWilliams A, Dricot A, Reichert P, Santhanam B, Ghamsari L, Calderwood MA, Rolland T, Charloteaux B, Lindquist S, Barab?si AL, Hill DE, Aloy P, Cusick ME, Xia Y, Roth FP, Vidal M
Molecular systems biology12(4)865(2016 Apr)

Human papillomavirus type 8 E6 oncoprotein inhibits transcription of the PDZ protein syntenin-2.
Lazi? D, Hufbauer M, Zigrino P, Buchholz S, Kazem S, Feltkamp MC, Mauch C, Steger G, Pfister H, Akg?l B
Journal of virology86(15)7943-52(2012 Aug)

Next-generation sequencing to generate interactome datasets.
Yu H, Tardivo L, Tam S, Weiner E, Gebreab F, Fan C, Svrzikapa N, Hirozane-Kishikawa T, Rietman E, Yang X, Sahalie J, Salehi-Ashtiani K, Hao T, Cusick ME, Hill DE, Roth FP, Braun P, Vidal M
Nature methods8(6)478-80(2011 Jun)

Large-scale proteomics and phosphoproteomics of urinary exosomes.
Gonzales PA, Pisitkun T, Hoffert JD, Tchapyjnikov D, Star RA, Kleta R, Wang NS, Knepper MA
Journal of the American Society of Nephrology : JASN20(2)363-79(2009 Feb)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

These results identified syntenin-2 as the first PDZ domain protein controlled by HPV8 and HPV16 at the mRNA level.
Title: Human papillomavirus type 8 E6 oncoprotein inhibits transcription of the PDZ protein syntenin-2.

The following SDCBP2 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the SDCBP2 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)
OHu09347	NM_015685.5 Latest version!	Homo sapiens syndecan binding protein 2 (SDCBP2), transcript variant 2, mRNA.	pcDNA3.1-C-(k)DYK or customized vector	7-9	$188.30 $269.00
OHu09492	NM_001199784.1 Latest version!	Homo sapiens syndecan binding protein 2 (SDCBP2), transcript variant 3, mRNA.	pcDNA3.1-C-(k)DYK or customized vector	7-9	$139.30 $199.00
OHu09492	NM_080489.5 Latest version!	Homo sapiens syndecan binding protein 2 (SDCBP2), transcript variant 1, mRNA.	pcDNA3.1-C-(k)DYK or customized vector	7-9	$139.30 $199.00
View Old Accession Versions >>
OHu09492	NM_080489.4	Homo sapiens syndecan binding protein 2 (SDCBP2), transcript variant 1, mRNA.	pcDNA3.1-C-(k)DYK or customized vector	7-9	$139.30 $199.00
Hide Old Accession Versions >>

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** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

SDCBP2 ( NM_015685.5 ) cDNA ORF clone, Homo sapiens(human) -> NP_056500.2 Homo sapiens syndecan binding protein 2 (SDCBP2), transcript variant 2, mRNA.

Price & Availability↑

CloneID	OHu09347
Clone ID Related Accession (Same CDS sequence)	NM_015685.5
Accession Version	NM_015685.5 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 624bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2018-11-10
Organism	Homo sapiens(human)
Product	syntenin-2 isoform b
Comment	Comment: REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from BI599848.1, AF131809.1, BC002727.2, BU684857.1 and BM987490.1. On Dec 18, 2010 this sequence version replaced NM_015685.4. Transcript Variant: This variant (2) differs in the 5' UTR, lacks a portion of the 5' coding region, and initiates translation at a downstream, in-frame start codon, compared to variant 1. The encoded isoform (b) is shorter than isoform a. ##Evidence-Data-START## Transcript exon combination :: SRR1803616.28780.1, SRR1803614.302387.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA1965299, SAMEA1966682 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end.

ATGGTGGCAC CGGTAACCGG GTACAGCCTG GGCGTGCGGC GAGCTGAGAT CAAGCCCGGG 
GTGCGCGAGA TCCACCTGTG CAAGGACGAG CGCGGCAAGA CCGGGCTGAG GCTGCGGAAG 
GTCGACCAGG GGCTCTTTGT GCAGTTGGTC CAGGCCAACA CCCCTGCATC CCTTGTGGGG 
CTGCGCTTTG GGGACCAGCT CCTGCAGATT GACGGGCGTG ACTGTGCTGG GTGGAGCTCG 
CACAAAGCCC ATCAGGTGGT GAAGAAGGCA TCAGGCGATA AGATTGTCGT GGTGGTTCGG 
GACAGGCCGT TCCAGCGGAC TGTCACCATG CACAAGGACA GCATGGGCCA CGTCGGCTTC 
GTGATCAAGA AGGGGAAGAT TGTCTCTCTG GTCAAAGGGA GTTCTGCGGC CCGCAACGGG 
CTCCTCACCA ACCACTACGT GTGTGAGGTG GACGGGCAGA ATGTTATCGG GCTGAAGGAC 
AAAAAGATCA TGGAGATTCT GGCCACGGCT GGGAACGTTG TCACCCTGAC CATCATCCCC 
AGTGTGATCT ACGAGCACAT GGTCAAAAAG TTGCCTCCAG TCCTGCTCCA CCACACCATG 
GACCACTCCA TCCCAGATGC CTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_056500.2
CDS	206..829
Translation	MVAPVTGYSLGVRRAEIKPGVREIHLCKDERGKTGLRLRKVDQGLFVQLVQANTPASLVGLRFGDQLLQIDGRDCAGWSSHKAHQVVKKASGDKIVVVVRDRPFQRTVTMHKDSMGHVGFVIKKGKIVSLVKGSSAARNGLLTNHYVCEVDGQNVIGLKDKKIMEILATAGNVVTLTIIPSVIYEHMVKKLPPVLLHHTMDHSIPDA

Target ORF information:

RefSeq Version	NM_015685.5
Organism	Homo sapiens(human)
Definition	Homo sapiens syndecan binding protein 2 (SDCBP2), transcript variant 2, mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_015685.5

ORF Insert Sequence:

ATGGTGGCAC CGGTAACCGG GTACAGCCTG GGCGTGCGGC GAGCTGAGAT CAAGCCCGGG 
GTGCGCGAGA TCCACCTGTG CAAGGACGAG CGCGGCAAGA CCGGGCTGAG GCTGCGGAAG 
GTCGACCAGG GGCTCTTTGT GCAGTTGGTC CAGGCCAACA CCCCTGCATC CCTTGTGGGG 
CTGCGCTTTG GGGACCAGCT CCTGCAGATT GACGGGCGTG ACTGTGCTGG GTGGAGCTCG 
CACAAAGCCC ATCAGGTGGT GAAGAAGGCA TCAGGCGATA AGATTGTCGT GGTGGTTCGG 
GACAGGCCGT TCCAGCGGAC TGTCACCATG CACAAGGACA GCATGGGCCA CGTCGGCTTC 
GTGATCAAGA AGGGGAAGAT TGTCTCTCTG GTCAAAGGGA GTTCTGCGGC CCGCAACGGG 
CTCCTCACCA ACCACTACGT GTGTGAGGTG GACGGGCAGA ATGTTATCGG GCTGAAGGAC 
AAAAAGATCA TGGAGATTCT GGCCACGGCT GGGAACGTTG TCACCCTGAC CATCATCCCC 
AGTGTGATCT ACGAGCACAT GGTCAAAAAG TTGCCTCCAG TCCTGCTCCA CCACACCATG 
GACCACTCCA TCCCAGATGC CTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

SDCBP2 ( NM_001199784.1 ) cDNA ORF clone, Homo sapiens(human) -> NP_001186713.1 Homo sapiens syndecan binding protein 2 (SDCBP2), transcript variant 3, mRNA.

Price & Availability↑

CloneID	OHu09492
Clone ID Related Accession (Same CDS sequence)	NM_001199784.1 , NM_080489.4 , NM_080489.5
Accession Version	NM_001199784.1 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 879bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2018-11-10
Organism	Homo sapiens(human)
Product	syntenin-2 isoform a
Comment	Comment: REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from AF159228.1, BU684857.1 and BM987490.1. Transcript Variant: This variant (3) differs in the 5' UTR compared to variant 1. Both variants 1 and 3 encode the same isoform (a). ##Evidence-Data-START## Transcript exon combination :: AF159228.1, SRR1163657.260765.1 [ECO:0000332] RNAseq introns :: mixed/partial sample support SAMEA1965299, SAMEA1966682 [ECO:0000350] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end.

ATGTCATCCC TGTACCCATC TCTAGAGGAC CTAAAAGTGG ACCAAGCCAT TCAGGCCCAG 
GTCAGAGCCT CACCCAAGAT GCCAGCCCTG CCAGTCCAGG CAACAGCCAT TTCCCCACCA 
CCAGTTTTGT ACCCAAACTT GGCAGAACTG GAAAATTATA TGGGTCTTTC CCTCTCCAGC 
CAAGAAGTCC AGGAGAGCCT GCTTCAGATT CCAGAGGGTG ACAGTACAGC GGTCTCGGGC 
CCCGGGCCCG GCCAGATGGT GGCACCGGTA ACCGGGTACA GCCTGGGCGT GCGGCGAGCT 
GAGATCAAGC CCGGGGTGCG CGAGATCCAC CTGTGCAAGG ACGAGCGCGG CAAGACCGGG 
CTGAGGCTGC GGAAGGTCGA CCAGGGGCTC TTTGTGCAGT TGGTCCAGGC CAACACCCCT 
GCATCCCTTG TGGGGCTGCG CTTTGGGGAC CAGCTCCTGC AGATTGACGG GCGTGACTGT 
GCTGGGTGGA GCTCGCACAA AGCCCATCAG GTGGTGAAGA AGGCATCAGG CGATAAGATT 
GTCGTGGTGG TTCGGGACAG GCCGTTCCAG CGGACTGTCA CCATGCACAA GGACAGCATG 
GGCCACGTCG GCTTCGTGAT CAAGAAGGGG AAGATTGTCT CTCTGGTCAA AGGGAGTTCT 
GCGGCCCGCA ACGGGCTCCT CACCAACCAC TACGTGTGTG AGGTGGACGG GCAGAATGTT 
ATCGGGCTGA AGGACAAAAA GATCATGGAG ATTCTGGCCA CGGCTGGGAA CGTTGTCACC 
CTGACCATCA TCCCCAGTGT GATCTACGAG CACATGGTCA AAAAGTTGCC TCCAGTCCTG 
CTCCACCACA CCATGGACCA CTCCATCCCA GATGCCTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_001186713.1
CDS	60..938
Translation	MSSLYPSLEDLKVDQAIQAQVRASPKMPALPVQATAISPPPVLYPNLAELENYMGLSLSSQEVQESLLQIPEGDSTAVSGPGPGQMVAPVTGYSLGVRRAEIKPGVREIHLCKDERGKTGLRLRKVDQGLFVQLVQANTPASLVGLRFGDQLLQIDGRDCAGWSSHKAHQVVKKASGDKIVVVVRDRPFQRTVTMHKDSMGHVGFVIKKGKIVSLVKGSSAARNGLLTNHYVCEVDGQNVIGLKDKKIMEILATAGNVVTLTIIPSVIYEHMVKKLPPVLLHHTMDHSIPDA

Target ORF information:

RefSeq Version	NM_001199784.1
Organism	Homo sapiens(human)
Definition	Homo sapiens syndecan binding protein 2 (SDCBP2), transcript variant 3, mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_001199784.1

ORF Insert Sequence:

ATGTCATCCC TGTACCCATC TCTAGAGGAC CTAAAAGTGG ACCAAGCCAT TCAGGCCCAG 
GTCAGAGCCT CACCCAAGAT GCCAGCCCTG CCAGTCCAGG CAACAGCCAT TTCCCCACCA 
CCAGTTTTGT ACCCAAACTT GGCAGAACTG GAAAATTATA TGGGTCTTTC CCTCTCCAGC 
CAAGAAGTCC AGGAGAGCCT GCTTCAGATT CCAGAGGGTG ACAGTACAGC GGTCTCGGGC 
CCCGGGCCCG GCCAGATGGT GGCACCGGTA ACCGGGTACA GCCTGGGCGT GCGGCGAGCT 
GAGATCAAGC CCGGGGTGCG CGAGATCCAC CTGTGCAAGG ACGAGCGCGG CAAGACCGGG 
CTGAGGCTGC GGAAGGTCGA CCAGGGGCTC TTTGTGCAGT TGGTCCAGGC CAACACCCCT 
GCATCCCTTG TGGGGCTGCG CTTTGGGGAC CAGCTCCTGC AGATTGACGG GCGTGACTGT 
GCTGGGTGGA GCTCGCACAA AGCCCATCAG GTGGTGAAGA AGGCATCAGG CGATAAGATT 
GTCGTGGTGG TTCGGGACAG GCCGTTCCAG CGGACTGTCA CCATGCACAA GGACAGCATG 
GGCCACGTCG GCTTCGTGAT CAAGAAGGGG AAGATTGTCT CTCTGGTCAA AGGGAGTTCT 
GCGGCCCGCA ACGGGCTCCT CACCAACCAC TACGTGTGTG AGGTGGACGG GCAGAATGTT 
ATCGGGCTGA AGGACAAAAA GATCATGGAG ATTCTGGCCA CGGCTGGGAA CGTTGTCACC 
CTGACCATCA TCCCCAGTGT GATCTACGAG CACATGGTCA AAAAGTTGCC TCCAGTCCTG 
CTCCACCACA CCATGGACCA CTCCATCCCA GATGCCTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

SDCBP2 ( NM_080489.4 ) cDNA ORF clone, Homo sapiens(human) -> NP_536737.3 Homo sapiens syndecan binding protein 2 (SDCBP2), transcript variant 1, mRNA.

Price & Availability↑

CloneID	OHu09492
Clone ID Related Accession (Same CDS sequence)	NM_001199784.1 , NM_080489.4 , NM_080489.5
Accession Version	NM_080489.4	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 879bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2017-10-01
Organism	Homo sapiens(human)
Product	syntenin-2 isoform a
Comment	Comment: REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from BP261525.1, BC002727.2, BU684857.1 and BM987490.1. This sequence is a reference standard in the RefSeqGene project. On Dec 17, 2010 this sequence version replaced NM_080489.3. Transcript Variant: This variant (1) represents the longest transcript and encodes the longer isoform (a). Both variants 1 and 3 encode the same isoform (a). ##Evidence-Data-START## Transcript exon combination :: BC002727.2, ERR279868.3115.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA1968540, SAMEA2153932 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end.

ATGTCATCCC TGTACCCATC TCTAGAGGAC CTAAAAGTGG ACCAAGCCAT TCAGGCCCAG 
GTCAGAGCCT CACCCAAGAT GCCAGCCCTG CCAGTCCAGG CAACAGCCAT TTCCCCACCA 
CCAGTTTTGT ACCCAAACTT GGCAGAACTG GAAAATTATA TGGGTCTTTC CCTCTCCAGC 
CAAGAAGTCC AGGAGAGCCT GCTTCAGATT CCAGAGGGTG ACAGTACAGC GGTCTCGGGC 
CCCGGGCCCG GCCAGATGGT GGCACCGGTA ACCGGGTACA GCCTGGGCGT GCGGCGAGCT 
GAGATCAAGC CCGGGGTGCG CGAGATCCAC CTGTGCAAGG ACGAGCGCGG CAAGACCGGG 
CTGAGGCTGC GGAAGGTCGA CCAGGGGCTC TTTGTGCAGT TGGTCCAGGC CAACACCCCT 
GCATCCCTTG TGGGGCTGCG CTTTGGGGAC CAGCTCCTGC AGATTGACGG GCGTGACTGT 
GCTGGGTGGA GCTCGCACAA AGCCCATCAG GTGGTGAAGA AGGCATCAGG CGATAAGATT 
GTCGTGGTGG TTCGGGACAG GCCGTTCCAG CGGACTGTCA CCATGCACAA GGACAGCATG 
GGCCACGTCG GCTTCGTGAT CAAGAAGGGG AAGATTGTCT CTCTGGTCAA AGGGAGTTCT 
GCGGCCCGCA ACGGGCTCCT CACCAACCAC TACGTGTGTG AGGTGGACGG GCAGAATGTT 
ATCGGGCTGA AGGACAAAAA GATCATGGAG ATTCTGGCCA CGGCTGGGAA CGTTGTCACC 
CTGACCATCA TCCCCAGTGT GATCTACGAG CACATGGTCA AAAAGTTGCC TCCAGTCCTG 
CTCCACCACA CCATGGACCA CTCCATCCCA GATGCCTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_536737.3
CDS	171..1049
Translation	MSSLYPSLEDLKVDQAIQAQVRASPKMPALPVQATAISPPPVLYPNLAELENYMGLSLSSQEVQESLLQIPEGDSTAVSGPGPGQMVAPVTGYSLGVRRAEIKPGVREIHLCKDERGKTGLRLRKVDQGLFVQLVQANTPASLVGLRFGDQLLQIDGRDCAGWSSHKAHQVVKKASGDKIVVVVRDRPFQRTVTMHKDSMGHVGFVIKKGKIVSLVKGSSAARNGLLTNHYVCEVDGQNVIGLKDKKIMEILATAGNVVTLTIIPSVIYEHMVKKLPPVLLHHTMDHSIPDA

Target ORF information:

RefSeq Version	NM_080489.4
Organism	Homo sapiens(human)
Definition	Homo sapiens syndecan binding protein 2 (SDCBP2), transcript variant 1, mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_080489.4

ORF Insert Sequence:

ATGTCATCCC TGTACCCATC TCTAGAGGAC CTAAAAGTGG ACCAAGCCAT TCAGGCCCAG 
GTCAGAGCCT CACCCAAGAT GCCAGCCCTG CCAGTCCAGG CAACAGCCAT TTCCCCACCA 
CCAGTTTTGT ACCCAAACTT GGCAGAACTG GAAAATTATA TGGGTCTTTC CCTCTCCAGC 
CAAGAAGTCC AGGAGAGCCT GCTTCAGATT CCAGAGGGTG ACAGTACAGC GGTCTCGGGC 
CCCGGGCCCG GCCAGATGGT GGCACCGGTA ACCGGGTACA GCCTGGGCGT GCGGCGAGCT 
GAGATCAAGC CCGGGGTGCG CGAGATCCAC CTGTGCAAGG ACGAGCGCGG CAAGACCGGG 
CTGAGGCTGC GGAAGGTCGA CCAGGGGCTC TTTGTGCAGT TGGTCCAGGC CAACACCCCT 
GCATCCCTTG TGGGGCTGCG CTTTGGGGAC CAGCTCCTGC AGATTGACGG GCGTGACTGT 
GCTGGGTGGA GCTCGCACAA AGCCCATCAG GTGGTGAAGA AGGCATCAGG CGATAAGATT 
GTCGTGGTGG TTCGGGACAG GCCGTTCCAG CGGACTGTCA CCATGCACAA GGACAGCATG 
GGCCACGTCG GCTTCGTGAT CAAGAAGGGG AAGATTGTCT CTCTGGTCAA AGGGAGTTCT 
GCGGCCCGCA ACGGGCTCCT CACCAACCAC TACGTGTGTG AGGTGGACGG GCAGAATGTT 
ATCGGGCTGA AGGACAAAAA GATCATGGAG ATTCTGGCCA CGGCTGGGAA CGTTGTCACC 
CTGACCATCA TCCCCAGTGT GATCTACGAG CACATGGTCA AAAAGTTGCC TCCAGTCCTG 
CTCCACCACA CCATGGACCA CTCCATCCCA GATGCCTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

SDCBP2 ( NM_080489.5 ) cDNA ORF clone, Homo sapiens(human) -> NP_536737.3 Homo sapiens syndecan binding protein 2 (SDCBP2), transcript variant 1, mRNA.

Price & Availability↑

CloneID	OHu09492
Clone ID Related Accession (Same CDS sequence)	NM_001199784.1 , NM_080489.4 , NM_080489.5
Accession Version	NM_080489.5 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 879bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2019-08-21
Organism	Homo sapiens(human)
Product	syntenin-2 isoform a
Comment	Comment: REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from BC002727.2, BU684857.1 and BM987490.1. This sequence is a reference standard in the RefSeqGene project. On Nov 22, 2018 this sequence version replaced NM_080489.4. Transcript Variant: This variant (1) represents the longest transcript and encodes the longer isoform (a). Both variants 1 and 3 encode the same isoform (a). ##Evidence-Data-START## Transcript exon combination :: BC002727.2, ERR279868.3115.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA1968540, SAMEA2153932 [ECO:0000348] ##Evidence-Data-END## ##RefSeq-Attributes-START## MANE Ensembl match :: ENST00000360779.4/ ENSP00000354013.3 RefSeq Select criteria :: based on conservation, expression, longest protein ##RefSeq-Attributes-END## COMPLETENESS: full length.

ATGTCATCCC TGTACCCATC TCTAGAGGAC CTAAAAGTGG ACCAAGCCAT TCAGGCCCAG 
GTCAGAGCCT CACCCAAGAT GCCAGCCCTG CCAGTCCAGG CAACAGCCAT TTCCCCACCA 
CCAGTTTTGT ACCCAAACTT GGCAGAACTG GAAAATTATA TGGGTCTTTC CCTCTCCAGC 
CAAGAAGTCC AGGAGAGCCT GCTTCAGATT CCAGAGGGTG ACAGTACAGC GGTCTCGGGC 
CCCGGGCCCG GCCAGATGGT GGCACCGGTA ACCGGGTACA GCCTGGGCGT GCGGCGAGCT 
GAGATCAAGC CCGGGGTGCG CGAGATCCAC CTGTGCAAGG ACGAGCGCGG CAAGACCGGG 
CTGAGGCTGC GGAAGGTCGA CCAGGGGCTC TTTGTGCAGT TGGTCCAGGC CAACACCCCT 
GCATCCCTTG TGGGGCTGCG CTTTGGGGAC CAGCTCCTGC AGATTGACGG GCGTGACTGT 
GCTGGGTGGA GCTCGCACAA AGCCCATCAG GTGGTGAAGA AGGCATCAGG CGATAAGATT 
GTCGTGGTGG TTCGGGACAG GCCGTTCCAG CGGACTGTCA CCATGCACAA GGACAGCATG 
GGCCACGTCG GCTTCGTGAT CAAGAAGGGG AAGATTGTCT CTCTGGTCAA AGGGAGTTCT 
GCGGCCCGCA ACGGGCTCCT CACCAACCAC TACGTGTGTG AGGTGGACGG GCAGAATGTT 
ATCGGGCTGA AGGACAAAAA GATCATGGAG ATTCTGGCCA CGGCTGGGAA CGTTGTCACC 
CTGACCATCA TCCCCAGTGT GATCTACGAG CACATGGTCA AAAAGTTGCC TCCAGTCCTG 
CTCCACCACA CCATGGACCA CTCCATCCCA GATGCCTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_536737.3
CDS	75..953
Translation	MSSLYPSLEDLKVDQAIQAQVRASPKMPALPVQATAISPPPVLYPNLAELENYMGLSLSSQEVQESLLQIPEGDSTAVSGPGPGQMVAPVTGYSLGVRRAEIKPGVREIHLCKDERGKTGLRLRKVDQGLFVQLVQANTPASLVGLRFGDQLLQIDGRDCAGWSSHKAHQVVKKASGDKIVVVVRDRPFQRTVTMHKDSMGHVGFVIKKGKIVSLVKGSSAARNGLLTNHYVCEVDGQNVIGLKDKKIMEILATAGNVVTLTIIPSVIYEHMVKKLPPVLLHHTMDHSIPDA

Target ORF information:

RefSeq Version	NM_080489.5
Organism	Homo sapiens(human)
Definition	Homo sapiens syndecan binding protein 2 (SDCBP2), transcript variant 1, mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_080489.5

ORF Insert Sequence:

ATGTCATCCC TGTACCCATC TCTAGAGGAC CTAAAAGTGG ACCAAGCCAT TCAGGCCCAG 
GTCAGAGCCT CACCCAAGAT GCCAGCCCTG CCAGTCCAGG CAACAGCCAT TTCCCCACCA 
CCAGTTTTGT ACCCAAACTT GGCAGAACTG GAAAATTATA TGGGTCTTTC CCTCTCCAGC 
CAAGAAGTCC AGGAGAGCCT GCTTCAGATT CCAGAGGGTG ACAGTACAGC GGTCTCGGGC 
CCCGGGCCCG GCCAGATGGT GGCACCGGTA ACCGGGTACA GCCTGGGCGT GCGGCGAGCT 
GAGATCAAGC CCGGGGTGCG CGAGATCCAC CTGTGCAAGG ACGAGCGCGG CAAGACCGGG 
CTGAGGCTGC GGAAGGTCGA CCAGGGGCTC TTTGTGCAGT TGGTCCAGGC CAACACCCCT 
GCATCCCTTG TGGGGCTGCG CTTTGGGGAC CAGCTCCTGC AGATTGACGG GCGTGACTGT 
GCTGGGTGGA GCTCGCACAA AGCCCATCAG GTGGTGAAGA AGGCATCAGG CGATAAGATT 
GTCGTGGTGG TTCGGGACAG GCCGTTCCAG CGGACTGTCA CCATGCACAA GGACAGCATG 
GGCCACGTCG GCTTCGTGAT CAAGAAGGGG AAGATTGTCT CTCTGGTCAA AGGGAGTTCT 
GCGGCCCGCA ACGGGCTCCT CACCAACCAC TACGTGTGTG AGGTGGACGG GCAGAATGTT 
ATCGGGCTGA AGGACAAAAA GATCATGGAG ATTCTGGCCA CGGCTGGGAA CGTTGTCACC 
CTGACCATCA TCCCCAGTGT GATCTACGAG CACATGGTCA AAAAGTTGCC TCCAGTCCTG 
CTCCACCACA CCATGGACCA CTCCATCCCA GATGCCTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PubMed

Pooled-matrix protein interaction screens using Barcode Fusion Genetics.
Molecular systems biology12(4)863(2016 Apr)
Yachie N,Petsalaki E,Mellor JC,Weile J,Jacob Y,Verby M,Ozturk SB,Li S,Cote AG,Mosca R,Knapp JJ,Ko M,Yu A,Gebbia M,Sahni N,Yi S,Tyagi T,Sheykhkarimli D,Roth JF,Wong C,Musa L,Snider J,Liu YC,Yu H,Braun P,Stagljar I,Hao T,Calderwood MA,Pelletier L,Aloy P,Hill DE,Vidal M,Roth FP

An inter-species protein-protein interaction network across vast evolutionary distance.
Molecular systems biology12(4)865(2016 Apr)
Zhong Q,Pevzner SJ,Hao T,Wang Y,Mosca R,Menche J,Taipale M,Ta?an M,Fan C,Yang X,Haley P,Murray RR,Mer F,Gebreab F,Tam S,MacWilliams A,Dricot A,Reichert P,Santhanam B,Ghamsari L,Calderwood MA,Rolland T,Charloteaux B,Lindquist S,Barab?si AL,Hill DE,Aloy P,Cusick ME,Xia Y,Roth FP,Vidal M

Human papillomavirus type 8 E6 oncoprotein inhibits transcription of the PDZ protein syntenin-2.
Journal of virology86(15)7943-52(2012 Aug)
Lazi? D,Hufbauer M,Zigrino P,Buchholz S,Kazem S,Feltkamp MC,Mauch C,Steger G,Pfister H,Akg?l B

Next-generation sequencing to generate interactome datasets.
Nature methods8(6)478-80(2011 Jun)
Yu H,Tardivo L,Tam S,Weiner E,Gebreab F,Fan C,Svrzikapa N,Hirozane-Kishikawa T,Rietman E,Yang X,Sahalie J,Salehi-Ashtiani K,Hao T,Cusick ME,Hill DE,Roth FP,Braun P,Vidal M

Large-scale proteomics and phosphoproteomics of urinary exosomes.
Journal of the American Society of Nephrology : JASN20(2)363-79(2009 Feb)
Gonzales PA,Pisitkun T,Hoffert JD,Tchapyjnikov D,Star RA,Kleta R,Wang NS,Knepper MA

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SDCBP2 cDNA ORF clone, Homo sapiens(human)

Gene

Clones

gRNAs

Related articles in PubMed

Target ORF information:

Target ORF information:

ORF Insert Sequence:

Target ORF information:

Target ORF information:

ORF Insert Sequence:

Target ORF information:

Target ORF information:

ORF Insert Sequence:

Target ORF information:

Target ORF information:

ORF Insert Sequence:

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