Gene Symbol | XIRP1 |
Entrez Gene ID | 100055451 |
Full Name | xin actin binding repeat containing 1 |
Gene Type | protein-coding |
Organism | Equus caballus(horse) |
ORF » Species Summary » Equus caballus » XIRP1 cDNA ORF clone
Gene Symbol | XIRP1 |
Entrez Gene ID | 100055451 |
Full Name | xin actin binding repeat containing 1 |
Gene Type | protein-coding |
Organism | Equus caballus(horse) |
mRNA | Protein | Name |
---|---|---|
XM_005600490.2 | XP_005600547.1 | xin actin-binding repeat-containing protein 1 isoform X1 |
XM_014731485.1 | XP_014586971.1 | xin actin-binding repeat-containing protein 1 isoform X2 |
XM_005600490.3 | XP_005600547.2 | xin actin-binding repeat-containing protein 1 isoform X1 |
XM_014731485.2 | XP_014586971.2 | xin actin-binding repeat-containing protein 1 isoform X2 |
NM_001256977.2 | NP_001243906.2 | xin actin-binding repeat-containing protein 1 |
XM_023619818.1 | XP_023475586.1 | xin actin-binding repeat-containing protein 1 isoform X3 |
NM_001256977.1 | NP_001243906.1 | xin actin-binding repeat-containing protein 1 |
Annotation of the Protein Coding Regions of the Equine Genome.
Hestand MS, Kalbfleisch TS, Coleman SJ, Zeng Z, Liu J, Orlando L, MacLeod JN
PloS one10(6)e0124375(2015)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following XIRP1 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the XIRP1 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | OHb50465 | |
Clone ID Related Accession (Same CDS sequence) | XM_023619818.1 | |
Accession Version | XM_023619818.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1587bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2018-01-22 | |
Organism | Equus caballus(horse) | |
Product | xin actin-binding repeat-containing protein 1 isoform X3 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_009159.3) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Equus caballus Annotation Release 103 Annotation Version :: 103 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGCCCCCAA GGAAGAAGCC CCAGCTGCCC CCTAAACCGG CACACCTAAG CCAGATCCGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_023475586.1 |
CDS | 337..1923 |
Translation |
Target ORF information:
Target ORF information:
|
XM_023619818.1 |
1 | ATGCCCCCAA GGAAGAAGCC CCAGCTGCCC CCTAAACCGG CACACCTAAG CCAGATCCGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OHb35654 | |
Clone ID Related Accession (Same CDS sequence) | XM_014731485.1 | |
Accession Version | XM_014731485.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 3360bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2015-11-19 | |
Organism | Equus caballus(horse) | |
Product | xin actin-binding repeat-containing protein 1 isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_001867381.1) annotated using gene prediction method: Gnomon, supported by mRNA evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Equus caballus Annotation Release 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGCCAAAG CCCAGACACA GGCAGCTCCC ACATCAACCA TCCCCATGGC AACTGCAGAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_014586971.1 |
CDS | 175..3534 |
Translation |
Target ORF information:
Target ORF information:
|
XM_014731485.1 |
1 | ATGGCCAAAG CCCAGACACA GGCAGCTCCC ACATCAACCA TCCCCATGGC AACTGCAGAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OHb50464 | |
Clone ID Related Accession (Same CDS sequence) | XM_014731485.2 | |
Accession Version | XM_014731485.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 3360bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2018-01-22 | |
Organism | Equus caballus(horse) | |
Product | xin actin-binding repeat-containing protein 1 isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_009159.3) annotated using gene prediction method: Gnomon, supported by mRNA evidence. Also see: Documentation of NCBI's Annotation Process On Jan 23, 2018 this sequence version replaced XM_014731485.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Equus caballus Annotation Release 103 Annotation Version :: 103 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGCCAAAG CCCAGACACA GGCAGCTCCC ACATCAACCA TCCCCATGGC AACTGCAGAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_014586971.2 |
CDS | 176..3535 |
Translation |
Target ORF information:
Target ORF information:
|
XM_014731485.2 |
1 | ATGGCCAAAG CCCAGACACA GGCAGCTCCC ACATCAACCA TCCCCATGGC AACTGCAGAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OHb50463 | |
Clone ID Related Accession (Same CDS sequence) | XM_005600490.3 , NM_001256977.2 | |
Accession Version | NM_001256977.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 5532bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2018-06-27 | |
Organism | Equus caballus(horse) | |
Product | xin actin-binding repeat-containing protein 1 | |
Comment | Comment: INFERRED REFSEQ: This record is predicted by genome sequence analysis and is not yet supported by experimental evidence. The reference sequence was derived from PJAA01000017.1. On Jun 28, 2018 this sequence version replaced NM_001256977.1. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments. |
1 | ATGGCCAAAG CCCAGACACA GGCAGCTCCC ACATCAACCA TCCCCATGGC AACTGCAGAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001243906.2 |
CDS | 1..5532 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001256977.2 |
1 | ATGGCCAAAG CCCAGACACA GGCAGCTCCC ACATCAACCA TCCCCATGGC AACTGCAGAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OHb50463 | |
Clone ID Related Accession (Same CDS sequence) | XM_005600490.3 , NM_001256977.2 | |
Accession Version | XM_005600490.3 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 5532bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2018-01-22 | |
Organism | Equus caballus(horse) | |
Product | xin actin-binding repeat-containing protein 1 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_009159.3) annotated using gene prediction method: Gnomon, supported by mRNA evidence. Also see: Documentation of NCBI's Annotation Process On Jan 23, 2018 this sequence version replaced XM_005600490.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Equus caballus Annotation Release 103 Annotation Version :: 103 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGCCAAAG CCCAGACACA GGCAGCTCCC ACATCAACCA TCCCCATGGC AACTGCAGAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_005600547.2 |
CDS | 174..5705 |
Translation |
Target ORF information:
Target ORF information:
|
XM_005600490.3 |
1 | ATGGCCAAAG CCCAGACACA GGCAGCTCCC ACATCAACCA TCCCCATGGC AACTGCAGAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OHb00233 | |
Clone ID Related Accession (Same CDS sequence) | XM_005600490.2 , NM_001256977.1 | |
Accession Version | NM_001256977.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 5532bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2017-10-22 | |
Organism | Equus caballus(horse) | |
Product | xin actin-binding repeat-containing protein 1 | |
Comment | Comment: INFERRED REFSEQ: This record is predicted by genome sequence analysis and is not yet supported by experimental evidence. The reference sequence was derived from AAWR02008671.1. On Mar 10, 2012 this sequence version replaced XM_001501989.1. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments. |
1 | ATGGCCAAAG CCCAGACACA GGCAGCTCCC ACATCAACCA TCCCCATGGC AACTGCAGAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001243906.1 |
CDS | 1..5532 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001256977.1 |
1 | ATGGCCAAAG CCCAGACACA GGCAGCTCCC ACATCAACCA TCCCCATGGC AACTGCAGAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OHb00233 | |
Clone ID Related Accession (Same CDS sequence) | XM_005600490.2 , NM_001256977.1 | |
Accession Version | XM_005600490.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 5532bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2015-11-19 | |
Organism | Equus caballus(horse) | |
Product | xin actin-binding repeat-containing protein 1 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_001867381.1) annotated using gene prediction method: Gnomon, supported by mRNA evidence. Also see: Documentation of NCBI's Annotation Process On Nov 20, 2015 this sequence version replaced XM_005600490.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Equus caballus Annotation Release 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGCCAAAG CCCAGACACA GGCAGCTCCC ACATCAACCA TCCCCATGGC AACTGCAGAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_005600547.1 |
CDS | 169..5700 |
Translation |
Target ORF information:
Target ORF information:
|
XM_005600490.2 |
1 | ATGGCCAAAG CCCAGACACA GGCAGCTCCC ACATCAACCA TCCCCATGGC AACTGCAGAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
Annotation of the Protein Coding Regions of the Equine Genome. |