Ssrp cDNA ORF clone, Drosophila melanogaster(fruit fly)

Gene
Clones
gRNAs

Summary

Gene Symbol	Ssrp
Entrez Gene ID	37767
Full Name	Structure specific recognition protein
Synonyms	CG4817,Cf5,Dmel\CG4817,DssRP,SSRP,SSRP1,dSSRP,dSSRP1,dSsrp,ssrp
General protein information	Preferred Names Structure specific recognition protein Names CG4817 gene product from transcript CG4817-RA CG4817-PA Ssrp-PA chorion factor structure specific recognition protein structure-specific recognition protein
Gene Type	protein-coding
Organism	Drosophila melanogaster(fruit fly)
Genome	Chromosome: 2R Map Location: 60A2-60A2

mRNA and Protein(s)

mRNA	Protein	Name
NM_079106.3	NP_523830.2	structure specific recognition protein

Pathways from BioSystems

Homologies

Danio rerio (zebrafish)	ssrp1b	XP_005160322.1
Drosophila melanogaster (fruit fly)	Ssrp	NP_523830.2
Pan troglodytes (chimpanzee)	SSRP1	XP_003954279.1
Bos taurus (cattle)	SSRP1	NP_001094511.1
Oryza sativa (rice)	Os05g0182600	NP_001054820.1
Anopheles gambiae (African malaria mosquito)	AgaP_AGAP012335	XP_320213.4
Caenorhabditis elegans (roundworm)	hmg-4	NP_498633.1
Oryza sativa (rice)	Os01g0184900	NP_001042237.1
Xenopus tropicalis (tropical clawed frog)	ssrp1	NP_001184126.1
Homo sapiens (human)	SSRP1	NP_003137.1
Rattus norvegicus (Norway rat)	Ssrp1	NP_112383.1
Gallus gallus (chicken)	SSRP1	NP_001005796.1
Caenorhabditis elegans (roundworm)	hmg-3	NP_491688.1
Arabidopsis thaliana (thale cress)	HMG	NP_189515.1
	SSRP1	XP_001103334.1
Canis lupus familiaris (dog)	SSRP1	XP_005631264.1
Mus musculus (house mouse)	Ssrp1	NP_001129553.1

Gene Ontology
Bibliography

Related articles in PubMed

Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data.
Matthews BB, Dos Santos G, Crosby MA, Emmert DB, St Pierre SE, Gramates LS, Zhou P, Schroeder AJ, Falls K, Strelets V, Russo SM, Gelbart WM,
G3 (Bethesda, Md.)5(8)1721-36(2015 Jun)

Gene Model Annotations for Drosophila melanogaster: The Rule-Benders.
Crosby MA, Gramates LS, Dos Santos G, Matthews BB, St Pierre SE, Zhou P, Schroeder AJ, Falls K, Emmert DB, Russo SM, Gelbart WM,
G3 (Bethesda, Md.)5(8)1737-49(2015 Jun)

Sequence finishing and mapping of Drosophila melanogaster heterochromatin.
Hoskins RA, Carlson JW, Kennedy C, Acevedo D, Evans-Holm M, Frise E, Wan KH, Park S, Mendez-Lago M, Rossi F, Villasante A, Dimitri P, Karpen GH, Celniker SE
Science (New York, N.Y.)316(5831)1625-8(2007 Jun)

The Release 5.1 annotation of Drosophila melanogaster heterochromatin.
Smith CD, Shu S, Mungall CJ, Karpen GH
Science (New York, N.Y.)316(5831)1586-91(2007 Jun)

Combined evidence annotation of transposable elements in genome sequences.
Quesneville H, Bergman CM, Andrieu O, Autard D, Nouaud D, Ashburner M, Anxolabehere D
PLoS computational biology1(2)166-75(2005 Jul)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

alternatively spliced isoforms control self-renewal in neuroblast lineages
Title: Genome-wide analysis of self-renewal in Drosophila neural stem cells by transgenic RNAi.

rapid chromatin transactions during early embryogenesis through the dephosphorylation of some sites in the maternally transmitted dSSRP1
Title: Phosphorylated intrinsically disordered region of FACT masks its nucleosomal DNA binding elements.

Study shows that the GAGA factor-FACT complex and its binding site just downstream from the white gene are crucial for position effect variegation.
Title: Drosophila GAGA factor directs histone H3.3 replacement that prevents the heterochromatin spreading.

Results report the solution structure of the HMG-box domain in Drosophila SSRP1.
Title: Solution structure of the HMG-box domain in the SSRP1 subunit of FACT.

results show that FACT, a heterodimer of dSPT16 and dSSRP1, associates with GAGA factor through its dSSRP1 subunit & facilitates chromatin remodeling; interactions between GAGA factor and spt16 implicate the GAGA factor-FACT complex in Hox gene expression
Title: Drosophila FACT contributes to Hox gene expression through physical and functional interactions with GAGA factor.

The following Ssrp gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the Ssrp cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)	Select
OFa13182	NM_079106.3 Latest version!	Drosophila melanogaster structure specific recognition protein (Ssrp), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	12-14	$426.30 $609.00

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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

Ssrp ( NM_079106.3 ) cDNA ORF clone, Drosophila melanogaster(fruit fly) -> NP_523830.2 Drosophila melanogaster structure specific recognition protein (Ssrp), mRNA.

Price & Availability↑

CloneID	OFa13182
Clone ID Related Accession (Same CDS sequence)	NM_079106.3
Accession Version	NM_079106.3 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 2172bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2019-04-24
Organism	Drosophila melanogaster(fruit fly)
Product	structure specific recognition protein
Comment	Comment: REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NT_033778). On Jul 15, 2014 this sequence version replaced NM_079106.2. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.26 URL :: http://flybase.org ##Genome-Annotation-Data-END##

ATGACAGACT CTCTGGAGTA CAACGACATA AACGCCGAAG TGCGCGGAGT CTTGTGTTCC 
GGACGCCTAA AGATGACCGA GCAGAACATC ATCTTCAAGA ACACCAAGAC CGGCAAGGTG 
GAGCAGATCT CGGCAGAGGA CATAGACCTG ATCAATTCGC AGAAGTTCGT GGGCACCTGG 
GGACTGAGGG TGTTCACCAA AGGCGGCGTG CTCCACCGCT TCACCGGATT CCGCGACAGC 
GAGCACGAGA AGCTGGGCAA GTTTATCAAG GCTGCCTACT CGCAGGAGAT GGTCGAGAAG 
GAGATGTGCG TCAAGGGCTG GAACTGGGGC ACCGCCCGCT TCATGGGCTC CGTCCTGAGC 
TTCGACAAGG AGTCGAAGAC CATCTTCGAG GTGCCGCTGT CGCACGTTTC GCAGTGCGTG 
ACCGGCAAGA ACGAGGTCAC CCTGGAGTTC CACCAAAACG ACGATGCGCC CGTGGGTCTA 
CTGGAGATGC GGTTCCACAT ACCCGCCGTG GAGTCGGCCG AGGAGGATCC GGTAGACAAG 
TTCCACCAGA ACGTAATGAG CAAGGCCTCG GTCATCTCGG CTTCGGGCGA GTCCATCGCC 
ATTTTCAGAG AGATCCAGAT CCTCACGCCT CGCGGTCGCT ATGACATCAA GATCTTCTCG 
ACCTTCTTCC AGCTGCACGG CAAGACGTTC GACTACAAGA TTCCCATGGA CTCGGTGCTG 
CGGCTCTTCA TGCTGCCCCA CAAAGACAGT CGACAGATGT TCTTTGTGCT CTCCTTGGAT 
CCGCCCATCA AGCAGGGACA AACGCGTTAC CACTACCTGG TCCTGCTGTT TGCTCCCGAT 
GAGGAGACCA CCATTGAGCT GCCATTCTCG GAAGCCGAGT TGCGAGACAA GTACGAGGGC 
AAGCTGGAGA AAGAGATCTC CGGGCCGGTG TACGAGGTGA TGGGCAAAGT GATGAAGGTG 
CTGATCGGTC GAAAAATTAC CGGACCCGGT AACTTTATCG GACACTCTGG CACGGCTGCA 
GTGGGCTGCT CGTTCAAGGC TGCAGCTGGA TATCTGTATC CCCTGGAGCG AGGATTCATC 
TATATCCACA AGCCACCGCT GCATATCCGC TTTGAGGAGA TTAGTTCTGT GAACTTTGCC 
CGCAGCGGCG GATCCACGCG ATCTTTCGAC TTCGAAGTGA CGCTCAAGAA CGGAACTGTT 
CACATCTTCT CCTCCATCGA GAAGGAGGAG TATGCCAAGC TCTTCGACTA CATCACACAG 
AAGAAGTTGC ATGTCAGCAA CATGGGCAAG GACAAGAGCG GCTACAAGGA CGTGGACTTT 
GGTGATTCGG ACAACGAGAA CGAACCAGAT GCCTATCTGG CTCGCCTCAA GGCTGAGGCG 
AGGGAAAAGG AGGAGGACGA CGACGATGGC GACTCGGATG AAGAGTCCAC GGATGAGGAC 
TTCAAGCCCA ACGAGAACGA GTCCGATGTG GCCGAGGAGT ATGACAGCAA CGTGGAGAGT 
GATTCGGACG ATGACAGCGA TGCTAGTGGC GGCGGAGGCG ACAGCGACGG CGCCAAGAAA 
AAGAAGGAGA AGAAGTCCGA GAAGAAAGAG AAAAAGGAGA AAAAACACAA GGAGAAGGAG 
AGAACAAAGA AACCCTCCAA GAAGAAGAAG GACTCTGGCA AACCCAAGCG CGCCACCACC 
GCTTTCATGC TCTGGCTGAA CGACACGCGC GAGAGCATCA AGAGGGAAAA TCCGGGCATA 
AAGGTTACCG AGATCGCCAA GAAGGGCGGC GAGATGTGGA AGGAGCTGAA GGACAAGTCC 
AAGTGGGAGG ATGCGGCGGC CAAGGACAAG CAGCGCTACC ACGACGAGAT GCGCAACTAC 
AAGCCTGAAG CGGGCGGTGA CAGCGACAAC GAGAAGGGTG GAAAGTCCTC CAAGAAGCGC 
AAGACGGAGC CTTCTCCATC CAAGAAGGCG AATACCTCGG GCAGCGGCTT CAAGAGCAAG 
GAGTACATTT CGGACGACGA CTCCACCAGC TCCGACGACG AGAAGGACAA CGAGCCTGCC 
AAGAAGAAGA GCAAGCCCCC ATCCGACGGC GATGCCAAGA AGAAAAAGGC CAAGAGCGAG 
AGCGAACCGG AGGAGAGCGA GGAGGACAGC AATGCCAGCG ATGAGGATGA GGAAGATGAG 
GCCAGTGATT AG

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_523830.2
CDS	142..2313
Translation	MTDSLEYNDINAEVRGVLCSGRLKMTEQNIIFKNTKTGKVEQISAEDIDLINSQKFVGTWGLRVFTKGGVLHRFTGFRDSEHEKLGKFIKAAYSQEMVEKEMCVKGWNWGTARFMGSVLSFDKESKTIFEVPLSHVSQCVTGKNEVTLEFHQNDDAPVGLLEMRFHIPAVESAEEDPVDKFHQNVMSKASVISASGESIAIFREIQILTPRGRYDIKIFSTFFQLHGKTFDYKIPMDSVLRLFMLPHKDSRQMFFVLSLDPPIKQGQTRYHYLVLLFAPDEETTIELPFSEAELRDKYEGKLEKEISGPVYEVMGKVMKVLIGRKITGPGNFIGHSGTAAVGCSFKAAAGYLYPLERGFIYIHKPPLHIRFEEISSVNFARSGGSTRSFDFEVTLKNGTVHIFSSIEKEEYAKLFDYITQKKLHVSNMGKDKSGYKDVDFGDSDNENEPDAYLARLKAEAREKEEDDDDGDSDEESTDEDFKPNENESDVAEEYDSNVESDSDDDSDASGGGGDSDGAKKKKEKKSEKKEKKEKKHKEKERTKKPSKKKKDSGKPKRATTAFMLWLNDTRESIKRENPGIKVTEIAKKGGEMWKELKDKSKWEDAAAKDKQRYHDEMRNYKPEAGGDSDNEKGGKSSKKRKTEPSPSKKANTSGSGFKSKEYISDDDSTSSDDEKDNEPAKKKSKPPSDGDAKKKKAKSESEPEESEEDSNASDEDEEDEASD

Target ORF information:

RefSeq Version	NM_079106.3
Organism	Drosophila melanogaster(fruit fly)
Definition	Drosophila melanogaster structure specific recognition protein (Ssrp), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_079106.3

ORF Insert Sequence:

ATGACAGACT CTCTGGAGTA CAACGACATA AACGCCGAAG TGCGCGGAGT CTTGTGTTCC 
GGACGCCTAA AGATGACCGA GCAGAACATC ATCTTCAAGA ACACCAAGAC CGGCAAGGTG 
GAGCAGATCT CGGCAGAGGA CATAGACCTG ATCAATTCGC AGAAGTTCGT GGGCACCTGG 
GGACTGAGGG TGTTCACCAA AGGCGGCGTG CTCCACCGCT TCACCGGATT CCGCGACAGC 
GAGCACGAGA AGCTGGGCAA GTTTATCAAG GCTGCCTACT CGCAGGAGAT GGTCGAGAAG 
GAGATGTGCG TCAAGGGCTG GAACTGGGGC ACCGCCCGCT TCATGGGCTC CGTCCTGAGC 
TTCGACAAGG AGTCGAAGAC CATCTTCGAG GTGCCGCTGT CGCACGTTTC GCAGTGCGTG 
ACCGGCAAGA ACGAGGTCAC CCTGGAGTTC CACCAAAACG ACGATGCGCC CGTGGGTCTA 
CTGGAGATGC GGTTCCACAT ACCCGCCGTG GAGTCGGCCG AGGAGGATCC GGTAGACAAG 
TTCCACCAGA ACGTAATGAG CAAGGCCTCG GTCATCTCGG CTTCGGGCGA GTCCATCGCC 
ATTTTCAGAG AGATCCAGAT CCTCACGCCT CGCGGTCGCT ATGACATCAA GATCTTCTCG 
ACCTTCTTCC AGCTGCACGG CAAGACGTTC GACTACAAGA TTCCCATGGA CTCGGTGCTG 
CGGCTCTTCA TGCTGCCCCA CAAAGACAGT CGACAGATGT TCTTTGTGCT CTCCTTGGAT 
CCGCCCATCA AGCAGGGACA AACGCGTTAC CACTACCTGG TCCTGCTGTT TGCTCCCGAT 
GAGGAGACCA CCATTGAGCT GCCATTCTCG GAAGCCGAGT TGCGAGACAA GTACGAGGGC 
AAGCTGGAGA AAGAGATCTC CGGGCCGGTG TACGAGGTGA TGGGCAAAGT GATGAAGGTG 
CTGATCGGTC GAAAAATTAC CGGACCCGGT AACTTTATCG GACACTCTGG CACGGCTGCA 
GTGGGCTGCT CGTTCAAGGC TGCAGCTGGA TATCTGTATC CCCTGGAGCG AGGATTCATC 
TATATCCACA AGCCACCGCT GCATATCCGC TTTGAGGAGA TTAGTTCTGT GAACTTTGCC 
CGCAGCGGCG GATCCACGCG ATCTTTCGAC TTCGAAGTGA CGCTCAAGAA CGGAACTGTT 
CACATCTTCT CCTCCATCGA GAAGGAGGAG TATGCCAAGC TCTTCGACTA CATCACACAG 
AAGAAGTTGC ATGTCAGCAA CATGGGCAAG GACAAGAGCG GCTACAAGGA CGTGGACTTT 
GGTGATTCGG ACAACGAGAA CGAACCAGAT GCCTATCTGG CTCGCCTCAA GGCTGAGGCG 
AGGGAAAAGG AGGAGGACGA CGACGATGGC GACTCGGATG AAGAGTCCAC GGATGAGGAC 
TTCAAGCCCA ACGAGAACGA GTCCGATGTG GCCGAGGAGT ATGACAGCAA CGTGGAGAGT 
GATTCGGACG ATGACAGCGA TGCTAGTGGC GGCGGAGGCG ACAGCGACGG CGCCAAGAAA 
AAGAAGGAGA AGAAGTCCGA GAAGAAAGAG AAAAAGGAGA AAAAACACAA GGAGAAGGAG 
AGAACAAAGA AACCCTCCAA GAAGAAGAAG GACTCTGGCA AACCCAAGCG CGCCACCACC 
GCTTTCATGC TCTGGCTGAA CGACACGCGC GAGAGCATCA AGAGGGAAAA TCCGGGCATA 
AAGGTTACCG AGATCGCCAA GAAGGGCGGC GAGATGTGGA AGGAGCTGAA GGACAAGTCC 
AAGTGGGAGG ATGCGGCGGC CAAGGACAAG CAGCGCTACC ACGACGAGAT GCGCAACTAC 
AAGCCTGAAG CGGGCGGTGA CAGCGACAAC GAGAAGGGTG GAAAGTCCTC CAAGAAGCGC 
AAGACGGAGC CTTCTCCATC CAAGAAGGCG AATACCTCGG GCAGCGGCTT CAAGAGCAAG 
GAGTACATTT CGGACGACGA CTCCACCAGC TCCGACGACG AGAAGGACAA CGAGCCTGCC 
AAGAAGAAGA GCAAGCCCCC ATCCGACGGC GATGCCAAGA AGAAAAAGGC CAAGAGCGAG 
AGCGAACCGG AGGAGAGCGA GGAGGACAGC AATGCCAGCG ATGAGGATGA GGAAGATGAG 
GCCAGTGATT AG

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PubMed

Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data.
G3 (Bethesda, Md.)5(8)1721-36(2015 Jun)
Matthews BB,Dos Santos G,Crosby MA,Emmert DB,St Pierre SE,Gramates LS,Zhou P,Schroeder AJ,Falls K,Strelets V,Russo SM,Gelbart WM,

Gene Model Annotations for Drosophila melanogaster: The Rule-Benders.
G3 (Bethesda, Md.)5(8)1737-49(2015 Jun)
Crosby MA,Gramates LS,Dos Santos G,Matthews BB,St Pierre SE,Zhou P,Schroeder AJ,Falls K,Emmert DB,Russo SM,Gelbart WM,

Sequence finishing and mapping of Drosophila melanogaster heterochromatin.
Science (New York, N.Y.)316(5831)1625-8(2007 Jun)
Hoskins RA,Carlson JW,Kennedy C,Acevedo D,Evans-Holm M,Frise E,Wan KH,Park S,Mendez-Lago M,Rossi F,Villasante A,Dimitri P,Karpen GH,Celniker SE

The Release 5.1 annotation of Drosophila melanogaster heterochromatin.
Science (New York, N.Y.)316(5831)1586-91(2007 Jun)
Smith CD,Shu S,Mungall CJ,Karpen GH

Combined evidence annotation of transposable elements in genome sequences.
PLoS computational biology1(2)166-75(2005 Jul)
Quesneville H,Bergman CM,Andrieu O,Autard D,Nouaud D,Ashburner M,Anxolabehere D

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Ssrp cDNA ORF clone, Drosophila melanogaster(fruit fly)

Gene

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gRNAs

Related articles in PubMed

Target ORF information:

Target ORF information:

ORF Insert Sequence:

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