npas1 cDNA ORF clone, Danio rerio(zebrafish)

Gene
Clones
gRNAs

Summary

Gene Symbol	npas1
Entrez Gene ID	559419
Full Name	neuronal PAS domain protein 1
Synonyms	npas3b,si:dkeyp-13e2.1
General protein information	Preferred Names neuronal PAS domain protein 1 Names neuronal PAS domain-containing protein 1 neuronal PAS domain protein 3b
Gene Type	protein-coding
Organism	Danio rerio(zebrafish)

mRNA and Protein(s)

mRNA	Protein	Name
NM_001328383.1	NP_001315312.1	neuronal PAS domain-containing protein 1

Pathways from BioSystems

Homologies

	NPAS1	XP_001112801.1
Bos taurus (cattle)	NPAS1	NP_001179586.1
Danio rerio (zebrafish)	npas3b	XP_005157535.1
Homo sapiens (human)	NPAS1	NP_002508.2
Mus musculus (house mouse)	Npas1	NP_032744.1
Pan troglodytes (chimpanzee)	NPAS1	XP_001168597.2
Canis lupus familiaris (dog)	NPAS1	XP_541539.2
Rattus norvegicus (Norway rat)	Npas1	NP_001100949.1

Gene Ontology
Bibliography

Related articles in PubMed

Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.
Pasquier J, Cabau C, Nguyen T, Jouanno E, Severac D, Braasch I, Journot L, Pontarotti P, Klopp C, Postlethwait JH, Guiguen Y, Bobe J
BMC genomics17368(2016 05)

RFX transcription factors are essential for hearing in mice.
Elkon R, Milon B, Morrison L, Shah M, Vijayakumar S, Racherla M, Leitch CC, Silipino L, Hadi S, Weiss-Gayet M, Barras E, Schmid CD, Ait-Lounis A, Barnes A, Song Y, Eisenman DJ, Eliyahu E, Frolenkov GI, Strome SE, Durand B, Zaghloul NA, Jones SM, Reith W, Hertzano R
Nature communications68549(2015 Oct)

Comprehensive expression map of transcription regulators in the adult zebrafish telencephalon reveals distinct neurogenic niches.
Diotel N, Rodriguez Viales R, Armant O, M?rz M, Ferg M, Rastegar S, Str?hle U
The Journal of comparative neurology523(8)1202-21(2015 Jun)

Phylogenetic analysis of zebrafish basic helix-loop-helix transcription factors.
Wang Y, Chen K, Yao Q, Zheng X, Yang Z
Journal of molecular evolution68(6)629-40(2009 Jun)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following npas1 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the npas1 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)	Select
ODa20235	NM_001328383.1 Latest version!	Danio rerio neuronal PAS domain protein 1 (npas1), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	12-14	$426.30 $609.00

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** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

npas1 ( NM_001328383.1 ) cDNA ORF clone, Danio rerio(zebrafish) -> NP_001315312.1 Danio rerio neuronal PAS domain protein 1 (npas1), mRNA.

Price & Availability↑

CloneID	ODa20235
Clone ID Related Accession (Same CDS sequence)	NM_001328383.1
Accession Version	NM_001328383.1 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 2313bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2018-11-23
Organism	Danio rerio(zebrafish)
Product	neuronal PAS domain-containing protein 1
Comment	Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from BX296539.5. On Jun 14, 2016 this sequence version replaced XM_682759.6. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments. ##Evidence-Data-START## Transcript exon combination :: GFIL01028452.1 [ECO:0000332] RNAseq introns :: mixed/partial sample support SAMEA2168447, SAMEA3505370 [ECO:0000350] ##Evidence-Data-END##

ATGGCGGCCA TGCCGTTCGT CAGCGAGGGC AAGTGTGTGT CCGTCGAGTG GGACTTTCTT 
CAGGGGCTTC TCGCCAAACC ACCCACCTTA CCCTGCTTGC AGAACTTGAG GAAGGAGAAG 
TCCCGCAATG CAGCTCGTTC TCGGCGAGGC AAAGAGAACT TTGAGTTCTT CGAGCTGGCC 
AAGATGCTCC CCCTCCCTGG GGCAATAACC AGCCAGCTGG ACAAGGCCTC CATAATCCGC 
CTCACCATCA GCTACCTGCA CATGAGACAC TTCGCCAGCC AGGGAGACCC GCCCTGGAGC 
CCCCTAATGG AAGGAGAGAA CAACTGCAGC AAGGTGCGAA GAACAAGTCA TTCATTGGTC 
ACTGACATAT TCGAACAGCA TTTGGGAGCT CATCTACTGC AGTCTCTGGA TGGATTTGTG 
TTTGTGGTCA GTCAAGAAGG CAGATTTCTT TACATCTCAG AGACCGTCTC CATCTACCTT 
GGCCTTTCAC AGGTGGAGTT GACTGGCAGC AGTGTGTTCG ATTACATCCA CCCTGCGGAT 
CATGTGGAGA TGGCGGAGCG TCTGGGCATC AGGCCACACC TGCGGGCAGA GGCCGGCTGT 
CAGACGTCCC ATGAAAGTGC TTCAAGCTCA GCATCCACGT CCTCGCTGGC TGGCACTCCA 
GAACCAGCAC CACACAGTCC TTGTTCTCCA GTCAGGGAGT TGTCGGAACG TGGCTTCTTC 
ATCCGGATGA AATCCACACT CACCAAACGT GGCCTCCACG TTAAATCCTC GGGCTATAAA 
GTGATTCATG TGACAGGTCG GATTCGATGT CGGCCAGCAC TGGTGCCCAG CTCCTCCCGA 
GCCTTACATC GGCCAATGGG ATTGGTCGCT CTGGCTCACA CACTTCCACC CTCCACGCTC 
AATGAGGTGC GCATGGAAAG CCACATGTTT GTTTTCAGAG TCAACATGGA TCTGCAGGTC 
ACCTACTGTG AAAACAGGAT TTCAGAGTAT ATGGACCTGA GCCCAGCTGA AGTGGTTGGA 
CATACCTGCT ATCACTTCAT TCATGCTGAA GACCTGGACA CCGTCAGGCA GAGCCATGAA 
GACTTGCTGC GGAAAGGGCA GGTTGTGACC GGATATTACC GTTGGCTGCA GAGGAGAGGA 
GGTTATCTGT GGATTCAGTC CTGCGCCACC GTTTCTATTA ACCACAAAGC ACCCCATGAG 
CGTAATGTCA TCTGGGTCAA CTATGTGCTC AGTCGGCCAG AGCTGGCAGA CATGCCTCTG 
GACTTATTAC AACTTCCAGA AAGCCTGAGG GCAGAGCGGC TTCAAGCAAG CTCCTCCCCG 
CGCGACATGT CTCCAAAGAC ACAAGGCTCT ACTGGGACGC AACCATTGAA AAGCAGGTCT 
GAAACAGACC TCAAAGGAAA GGAAGCCTTC TCACACAATA CTTCCAGTCA ATCAGAGAAC 
ACTAGGAAAA GATTGCACCA GACTGACTCT GAGAGTGGGC CACCCGAGGC AAGGAGACGG 
ATGGAGGTGT TTCGTCAGAG AGAGGACAGC CCGTGTACCT CCTCGGACCA AGCCAGTGAC 
AGCGAGGTGG AAGAGGATGA TGAGAGGGAG AGCGAGTGGG ACCACAATCC CTCCAGCAAA 
CGGGTGAAGA ATGAAGAGGG GGCTTCAAAA CAAGGCAACG GGGCTAACGG AGCAGGTAAG 
ATCCACAATG GCCGTGCTGT GATCCAGCAT CTTAAGAGTG TGGTGACCAG TTCCGGATCA 
AACATTAAGA CTGAACAAGA AGTGTTGGGC ACAACTGTAG GTGCAGGTTC TGGGAGGCGA 
TGGAGTCAAC CTCTGCTTGG CAATGGCGGA CCTAATGGCA GCAGTCCACC TTCCCAGCCT 
CCAAATTCCA CCCCGACAGA AGCTCCACCC AAGGGTCTAT TCAGCCCACC CTCCCCAACC 
CTGTCTCCAC CCATCCCAGC ATCATCCCTA CCCAGAGATG ACCGGTCCAT TCATGGAGGA 
CGTGCTTCCG ACTTTGAGCT ACTGCAGAGA CTAACTGCAA GTGGGGCTGC AGGACGTGTT 
CTTTTTCATC CCCTGGCTCT CGGCCCGCAG GGACCTCAGA GTCTCTACGC TCCAAGTACG 
ATTCGCTACG CCCCACCTGA GATGCCCACA ATTCACACTG AAGGTCACCG CTCAGACCAT 
GGAGCCAAAA CTCCCACTTT CTTTCCTCAC CTGCAAAGGA TCACATCTCT GCCTCCCTTC 
AGTGGCTTTT CTCCAGCCGA ACCCACCTTT CCTCCAACTC TGCCCTTCTG TATGAACGGT 
CTGAGGGGGG CCGCAGGGAC AGATGAGGAT TGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_001315312.1
CDS	597..2909
Translation	MAAMPFVSEGKCVSVEWDFLQGLLAKPPTLPCLQNLRKEKSRNAARSRRGKENFEFFELAKMLPLPGAITSQLDKASIIRLTISYLHMRHFASQGDPPWSPLMEGENNCSKVRRTSHSLVTDIFEQHLGAHLLQSLDGFVFVVSQEGRFLYISETVSIYLGLSQVELTGSSVFDYIHPADHVEMAERLGIRPHLRAEAGCQTSHESASSSASTSSLAGTPEPAPHSPCSPVRELSERGFFIRMKSTLTKRGLHVKSSGYKVIHVTGRIRCRPALVPSSSRALHRPMGLVALAHTLPPSTLNEVRMESHMFVFRVNMDLQVTYCENRISEYMDLSPAEVVGHTCYHFIHAEDLDTVRQSHEDLLRKGQVVTGYYRWLQRRGGYLWIQSCATVSINHKAPHERNVIWVNYVLSRPELADMPLDLLQLPESLRAERLQASSSPRDMSPKTQGSTGTQPLKSRSETDLKGKEAFSHNTSSQSENTRKRLHQTDSESGPPEARRRMEVFRQREDSPCTSSDQASDSEVEEDDERESEWDHNPSSKRVKNEEGASKQGNGANGAGKIHNGRAVIQHLKSVVTSSGSNIKTEQEVLGTTVGAGSGRRWSQPLLGNGGPNGSSPPSQPPNSTPTEAPPKGLFSPPSPTLSPPIPASSLPRDDRSIHGGRASDFELLQRLTASGAAGRVLFHPLALGPQGPQSLYAPSTIRYAPPEMPTIHTEGHRSDHGAKTPTFFPHLQRITSLPPFSGFSPAEPTFPPTLPFCMNGLRGAAGTDED

Target ORF information:

RefSeq Version	NM_001328383.1
Organism	Danio rerio(zebrafish)
Definition	Danio rerio neuronal PAS domain protein 1 (npas1), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_001328383.1

ORF Insert Sequence:

ATGGCGGCCA TGCCGTTCGT CAGCGAGGGC AAGTGTGTGT CCGTCGAGTG GGACTTTCTT 
CAGGGGCTTC TCGCCAAACC ACCCACCTTA CCCTGCTTGC AGAACTTGAG GAAGGAGAAG 
TCCCGCAATG CAGCTCGTTC TCGGCGAGGC AAAGAGAACT TTGAGTTCTT CGAGCTGGCC 
AAGATGCTCC CCCTCCCTGG GGCAATAACC AGCCAGCTGG ACAAGGCCTC CATAATCCGC 
CTCACCATCA GCTACCTGCA CATGAGACAC TTCGCCAGCC AGGGAGACCC GCCCTGGAGC 
CCCCTAATGG AAGGAGAGAA CAACTGCAGC AAGGTGCGAA GAACAAGTCA TTCATTGGTC 
ACTGACATAT TCGAACAGCA TTTGGGAGCT CATCTACTGC AGTCTCTGGA TGGATTTGTG 
TTTGTGGTCA GTCAAGAAGG CAGATTTCTT TACATCTCAG AGACCGTCTC CATCTACCTT 
GGCCTTTCAC AGGTGGAGTT GACTGGCAGC AGTGTGTTCG ATTACATCCA CCCTGCGGAT 
CATGTGGAGA TGGCGGAGCG TCTGGGCATC AGGCCACACC TGCGGGCAGA GGCCGGCTGT 
CAGACGTCCC ATGAAAGTGC TTCAAGCTCA GCATCCACGT CCTCGCTGGC TGGCACTCCA 
GAACCAGCAC CACACAGTCC TTGTTCTCCA GTCAGGGAGT TGTCGGAACG TGGCTTCTTC 
ATCCGGATGA AATCCACACT CACCAAACGT GGCCTCCACG TTAAATCCTC GGGCTATAAA 
GTGATTCATG TGACAGGTCG GATTCGATGT CGGCCAGCAC TGGTGCCCAG CTCCTCCCGA 
GCCTTACATC GGCCAATGGG ATTGGTCGCT CTGGCTCACA CACTTCCACC CTCCACGCTC 
AATGAGGTGC GCATGGAAAG CCACATGTTT GTTTTCAGAG TCAACATGGA TCTGCAGGTC 
ACCTACTGTG AAAACAGGAT TTCAGAGTAT ATGGACCTGA GCCCAGCTGA AGTGGTTGGA 
CATACCTGCT ATCACTTCAT TCATGCTGAA GACCTGGACA CCGTCAGGCA GAGCCATGAA 
GACTTGCTGC GGAAAGGGCA GGTTGTGACC GGATATTACC GTTGGCTGCA GAGGAGAGGA 
GGTTATCTGT GGATTCAGTC CTGCGCCACC GTTTCTATTA ACCACAAAGC ACCCCATGAG 
CGTAATGTCA TCTGGGTCAA CTATGTGCTC AGTCGGCCAG AGCTGGCAGA CATGCCTCTG 
GACTTATTAC AACTTCCAGA AAGCCTGAGG GCAGAGCGGC TTCAAGCAAG CTCCTCCCCG 
CGCGACATGT CTCCAAAGAC ACAAGGCTCT ACTGGGACGC AACCATTGAA AAGCAGGTCT 
GAAACAGACC TCAAAGGAAA GGAAGCCTTC TCACACAATA CTTCCAGTCA ATCAGAGAAC 
ACTAGGAAAA GATTGCACCA GACTGACTCT GAGAGTGGGC CACCCGAGGC AAGGAGACGG 
ATGGAGGTGT TTCGTCAGAG AGAGGACAGC CCGTGTACCT CCTCGGACCA AGCCAGTGAC 
AGCGAGGTGG AAGAGGATGA TGAGAGGGAG AGCGAGTGGG ACCACAATCC CTCCAGCAAA 
CGGGTGAAGA ATGAAGAGGG GGCTTCAAAA CAAGGCAACG GGGCTAACGG AGCAGGTAAG 
ATCCACAATG GCCGTGCTGT GATCCAGCAT CTTAAGAGTG TGGTGACCAG TTCCGGATCA 
AACATTAAGA CTGAACAAGA AGTGTTGGGC ACAACTGTAG GTGCAGGTTC TGGGAGGCGA 
TGGAGTCAAC CTCTGCTTGG CAATGGCGGA CCTAATGGCA GCAGTCCACC TTCCCAGCCT 
CCAAATTCCA CCCCGACAGA AGCTCCACCC AAGGGTCTAT TCAGCCCACC CTCCCCAACC 
CTGTCTCCAC CCATCCCAGC ATCATCCCTA CCCAGAGATG ACCGGTCCAT TCATGGAGGA 
CGTGCTTCCG ACTTTGAGCT ACTGCAGAGA CTAACTGCAA GTGGGGCTGC AGGACGTGTT 
CTTTTTCATC CCCTGGCTCT CGGCCCGCAG GGACCTCAGA GTCTCTACGC TCCAAGTACG 
ATTCGCTACG CCCCACCTGA GATGCCCACA ATTCACACTG AAGGTCACCG CTCAGACCAT 
GGAGCCAAAA CTCCCACTTT CTTTCCTCAC CTGCAAAGGA TCACATCTCT GCCTCCCTTC 
AGTGGCTTTT CTCCAGCCGA ACCCACCTTT CCTCCAACTC TGCCCTTCTG TATGAACGGT 
CTGAGGGGGG CCGCAGGGAC AGATGAGGAT TGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PubMed

Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.
BMC genomics17368(2016 05)
Pasquier J,Cabau C,Nguyen T,Jouanno E,Severac D,Braasch I,Journot L,Pontarotti P,Klopp C,Postlethwait JH,Guiguen Y,Bobe J

RFX transcription factors are essential for hearing in mice.
Nature communications68549(2015 Oct)
Elkon R,Milon B,Morrison L,Shah M,Vijayakumar S,Racherla M,Leitch CC,Silipino L,Hadi S,Weiss-Gayet M,Barras E,Schmid CD,Ait-Lounis A,Barnes A,Song Y,Eisenman DJ,Eliyahu E,Frolenkov GI,Strome SE,Durand B,Zaghloul NA,Jones SM,Reith W,Hertzano R

Comprehensive expression map of transcription regulators in the adult zebrafish telencephalon reveals distinct neurogenic niches.
The Journal of comparative neurology523(8)1202-21(2015 Jun)
Diotel N,Rodriguez Viales R,Armant O,M?rz M,Ferg M,Rastegar S,Str?hle U

Phylogenetic analysis of zebrafish basic helix-loop-helix transcription factors.
Journal of molecular evolution68(6)629-40(2009 Jun)
Wang Y,Chen K,Yao Q,Zheng X,Yang Z

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npas1 cDNA ORF clone, Danio rerio(zebrafish)

Gene

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gRNAs

Related articles in PubMed

Target ORF information:

Target ORF information:

ORF Insert Sequence:

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