pym1 cDNA ORF clone, Danio rerio(zebrafish)

Gene
Clones
gRNAs

Summary

Gene Symbol	pym1
Entrez Gene ID	393566
Full Name	PYM homolog 1, exon junction complex associated factor
Synonyms	wibg,zgc:65891,zgc:77281
General protein information	Preferred Names PYM homolog 1, exon junction complex associated factor Names partner of Y14 and mago protein wibg homolog
Gene Type	protein-coding
Organism	Danio rerio(zebrafish)

mRNA and Protein(s)

mRNA	Protein	Name
NM_200594.2	NP_956888.2	partner of Y14 and mago

Pathways from BioSystems

Homologies

	WIBG	XP_001096601.2
Danio rerio (zebrafish)	wibg	NP_956888.2
Canis lupus familiaris (dog)	WIBG	XP_538222.2
Rattus norvegicus (Norway rat)	Wibg	NP_001102456.1
Gallus gallus (chicken)	WIBG	XP_003643500.1
Homo sapiens (human)	WIBG	NP_001137325.1
Pan troglodytes (chimpanzee)	WIBG	XP_509126.3
Xenopus tropicalis (tropical clawed frog)	wibg	NP_001016274.1
Bos taurus (cattle)	WIBG	NP_001095814.1
Mus musculus (house mouse)	Wibg	NP_001164340.1

Gene Ontology
Bibliography

Related articles in PubMed

Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.
Pasquier J, Cabau C, Nguyen T, Jouanno E, Severac D, Braasch I, Journot L, Pontarotti P, Klopp C, Postlethwait JH, Guiguen Y, Bobe J
BMC genomics17368(2016 05)

RFX transcription factors are essential for hearing in mice.
Elkon R, Milon B, Morrison L, Shah M, Vijayakumar S, Racherla M, Leitch CC, Silipino L, Hadi S, Weiss-Gayet M, Barras E, Schmid CD, Ait-Lounis A, Barnes A, Song Y, Eisenman DJ, Eliyahu E, Frolenkov GI, Strome SE, Durand B, Zaghloul NA, Jones SM, Reith W, Hertzano R
Nature communications68549(2015 Oct)

Processing of fish Ig heavy chain transcripts: diverse splicing patterns and unusual nonsense mediated decay.
Quiniou SM, Wilson M, Boudinot P
Developmental and comparative immunology35(9)949-58(2011 Sep)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following pym1 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the pym1 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)	Select
ODa37530	NM_200594.2 Latest version!	Danio rerio PYM homolog 1, exon junction complex associated factor (pym1), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	7-9	$104.30 $149.00

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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

pym1 ( NM_200594.2 ) cDNA ORF clone, Danio rerio(zebrafish) -> NP_956888.2 Danio rerio PYM homolog 1, exon junction complex associated factor (pym1), mRNA.

Price & Availability↑

CloneID	ODa37530
Clone ID Related Accession (Same CDS sequence)	NM_200594.2
Accession Version	NM_200594.2 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 585bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2018-11-23
Organism	Danio rerio(zebrafish)
Product	partner of Y14 and mago
Comment	Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC068187.1. On Jul 18, 2004 this sequence version replaced NM_200594.1. ##Evidence-Data-START## CDS exon combination :: BC068187.1 [ECO:0000331] RNAseq introns :: mixed/partial sample support SAMEA2168446, SAMEA2168447 [ECO:0000350] ##Evidence-Data-END##

ATGGCGACCC CCTATGTGAC AGATGAATCT GGGAAGTACA TCGCCGCCAC GCAGCGTCCG 
GATGGCTCCT GGAGGAAGCC GCGGCGGGTG AGGGATGGAT ACGTGCCGCA GGAGGAGGTG 
CCGGTGTACG AGAACAAGTT CGTGAAGTTC TTCAAGAGTA AGCCGGAGCT GCCGCCGGGC 
GTGTGTGTGG AGACCCCCCC GCAGACACAG ACGCAGCCGA GCGACGCCGC GGGCCTCTCC 
AGAACCGCCA AGCGCAACAT GAAGCGCAAG GAGAAGCGCA GGCAGCAGGG GCAGGAGACC 
AAGCCGGAGC CGGAACTGCA GCCGGAGCCT GAACTGCAGC CGGAGCCGGA GCCGCAGGGC 
CTGAGCCAGC AGATGCAGCA GCTGGAGCTG AGCGCCTCGC AGGGGCCCGG GGCCGCAGAC 
AGCGCACGCA GACTCAAGAA CCTGCGAAAG AAGCTGCGGC AGGTGGAGGA GCTCCAGCAG 
AGGGTGCTGT CCGGAGAGCT GAAGCCCAGC CAGGAGCAGC TGGACAAACT GGGGCGGGCC 
CAGGCCCTGA GGGAGGAGCT ACAGCAGCTG GAAGCCCATT CGTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_956888.2
CDS	411..995
Translation	MATPYVTDESGKYIAATQRPDGSWRKPRRVRDGYVPQEEVPVYENKFVKFFKSKPELPPGVCVETPPQTQTQPSDAAGLSRTAKRNMKRKEKRRQQGQETKPEPELQPEPELQPEPEPQGLSQQMQQLELSASQGPGAADSARRLKNLRKKLRQVEELQQRVLSGELKPSQEQLDKLGRAQALREELQQLEAHS

Target ORF information:

RefSeq Version	NM_200594.2
Organism	Danio rerio(zebrafish)
Definition	Danio rerio PYM homolog 1, exon junction complex associated factor (pym1), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_200594.2

ORF Insert Sequence:

ATGGCGACCC CCTATGTGAC AGATGAATCT GGGAAGTACA TCGCCGCCAC GCAGCGTCCG 
GATGGCTCCT GGAGGAAGCC GCGGCGGGTG AGGGATGGAT ACGTGCCGCA GGAGGAGGTG 
CCGGTGTACG AGAACAAGTT CGTGAAGTTC TTCAAGAGTA AGCCGGAGCT GCCGCCGGGC 
GTGTGTGTGG AGACCCCCCC GCAGACACAG ACGCAGCCGA GCGACGCCGC GGGCCTCTCC 
AGAACCGCCA AGCGCAACAT GAAGCGCAAG GAGAAGCGCA GGCAGCAGGG GCAGGAGACC 
AAGCCGGAGC CGGAACTGCA GCCGGAGCCT GAACTGCAGC CGGAGCCGGA GCCGCAGGGC 
CTGAGCCAGC AGATGCAGCA GCTGGAGCTG AGCGCCTCGC AGGGGCCCGG GGCCGCAGAC 
AGCGCACGCA GACTCAAGAA CCTGCGAAAG AAGCTGCGGC AGGTGGAGGA GCTCCAGCAG 
AGGGTGCTGT CCGGAGAGCT GAAGCCCAGC CAGGAGCAGC TGGACAAACT GGGGCGGGCC 
CAGGCCCTGA GGGAGGAGCT ACAGCAGCTG GAAGCCCATT CGTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PubMed

Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.
BMC genomics17368(2016 05)
Pasquier J,Cabau C,Nguyen T,Jouanno E,Severac D,Braasch I,Journot L,Pontarotti P,Klopp C,Postlethwait JH,Guiguen Y,Bobe J

RFX transcription factors are essential for hearing in mice.
Nature communications68549(2015 Oct)
Elkon R,Milon B,Morrison L,Shah M,Vijayakumar S,Racherla M,Leitch CC,Silipino L,Hadi S,Weiss-Gayet M,Barras E,Schmid CD,Ait-Lounis A,Barnes A,Song Y,Eisenman DJ,Eliyahu E,Frolenkov GI,Strome SE,Durand B,Zaghloul NA,Jones SM,Reith W,Hertzano R

Processing of fish Ig heavy chain transcripts: diverse splicing patterns and unusual nonsense mediated decay.
Developmental and comparative immunology35(9)949-58(2011 Sep)
Quiniou SM,Wilson M,Boudinot P