si:dkey-261i16.5 cDNA ORF clone, Danio rerio(zebrafish)

Gene
Clones
gRNAs

Summary

Gene Symbol	si:dkey-261i16.5
Entrez Gene ID	100007978
Full Name	si:dkey-261i16.5
General protein information	Preferred Names si:dkey-261i16.5 Names uncharacterized protein LOC100007978
Gene Type	protein-coding
Organism	Danio rerio(zebrafish)

mRNA and Protein(s)

mRNA	Protein	Name
XM_005169993.3	XP_005170050.1	uncharacterized protein LOC100007978 isoform X1
NM_001082990.1	NP_001076459.1	uncharacterized protein LOC100007978
XM_005169993.4	XP_005170050.1	uncharacterized protein LOC100007978 isoform X1

Pathways from BioSystems
Gene Ontology
Bibliography

Related articles in PubMed

Evolution of complexity in the zebrafish synapse proteome.
Bay?s ?, Collins MO, Reig-Viader R, Gou G, Goulding D, Izquierdo A, Choudhary JS, Emes RD, Grant SG
Nature communications814613(2017 Mar)

Chronic perfluorooctanesulfonic acid exposure disrupts lipid metabolism in zebrafish.
Cui Y, Lv S, Liu J, Nie S, Chen J, Dong Q, Huang C, Yang D
Human & experimental toxicology36(3)207-217(2017 Mar)

Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.
Pasquier J, Cabau C, Nguyen T, Jouanno E, Severac D, Braasch I, Journot L, Pontarotti P, Klopp C, Postlethwait JH, Guiguen Y, Bobe J
BMC genomics17368(2016 05)

RFX transcription factors are essential for hearing in mice.
Elkon R, Milon B, Morrison L, Shah M, Vijayakumar S, Racherla M, Leitch CC, Silipino L, Hadi S, Weiss-Gayet M, Barras E, Schmid CD, Ait-Lounis A, Barnes A, Song Y, Eisenman DJ, Eliyahu E, Frolenkov GI, Strome SE, Durand B, Zaghloul NA, Jones SM, Reith W, Hertzano R
Nature communications68549(2015 Oct)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following si:dkey-261i16.5 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the si:dkey-261i16.5 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)
ODa24104	NM_001082990.1 Latest version!	Danio rerio neurensin 1-like (nrsn1l), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	7-9	$104.30 $149.00
ODa24104	XM_005169993.4 Latest version!	Danio rerio si:dkey-261i16.5 (si:dkey-261i16.5), transcript variant X1, mRNA.	pcDNA3.1-C-(k)DYK or customized vector	7-9	$104.30 $149.00
View Old Accession Versions >>
ODa24104	XM_005169993.3	Danio rerio si:dkey-261i16.5 (si:dkey-261i16.5), transcript variant X1, mRNA.	pcDNA3.1-C-(k)DYK or customized vector	7-9	$104.30 $149.00
Hide Old Accession Versions >>

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** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

si:dkey-261i16.5 ( NM_001082990.1 ) cDNA ORF clone, Danio rerio(zebrafish) -> NP_001076459.1 Danio rerio neurensin 1-like (nrsn1l), mRNA.

Price & Availability↑

CloneID	ODa24104
Clone ID Related Accession (Same CDS sequence)	XM_005169993.3 , NM_001082990.1 , XM_005169993.4
Accession Version	NM_001082990.1 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 573bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2019-04-07
Organism	Danio rerio(zebrafish)
Product	uncharacterized protein LOC100007978
Comment	Comment: PREDICTED REFSEQ: This record has not been reviewed and the function is unknown. The reference sequence was derived from BX571830.6. On Mar 16, 2007 this sequence version replaced XM_001344656.1. ##Evidence-Data-START## Transcript exon combination :: BC163821.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA2168446, SAMEA2168447 [ECO:0000348] ##Evidence-Data-END##

ATGGCCTCTT GCTCTGAGGT TTGTGGGTCT GGTCATGCTG TGGACTCTGG CTTTCGTGTT 
TTTGGAGTGC GCTCCTATTT ACACCACTTC TATGAGGAGT GCACCGCCTC AATGAGGGAG 
CAGCAGGAGG ATTTACAGGG CCAGAGATCA TCACTGCGGT GGAGCTCCAG CCTCTGGAAG 
GTCACTCTTG TCGTTGGTGT GGTGCTCCTG ACAGTGGGTT TGGTGGTCAT GACAGTGGGT 
TATGCCATTC CCACCCGCAT TGAAGCTTTC GGGGAGGGCG AGCTGCTGTT CGTGGACCGC 
CAAGCCATGC GCCACAATCA CTCCCTACAC ATTTGCGTTC TGGTTGGGAC GGGGCTTCTT 
ACTCTGGGCG GGGTTTTGAT GGCGGGAGGG ATCCTGACAT CCAACTTCTC CACCACTCCC 
ACTAAACAGG AAGATTCTCG AAAAGGGGGA ACCAGAGTCC CGAATGCAGT GAGAAGCCCG 
GCAGACCCTG TGATGAAGCC GCCCAGTCCG GCCTCTAGTG ATGGAGGAGT ATCCCCACTC 
GCTCGGGATG ATAAAGTTCA CCAGAGCTCA TGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_001076459.1
CDS	10..582
Translation	MASCSEVCGSGHAVDSGFRVFGVRSYLHHFYEECTASMREQQEDLQGQRSSLRWSSSLWKVTLVVGVVLLTVGLVVMTVGYAIPTRIEAFGEGELLFVDRQAMRHNHSLHICVLVGTGLLTLGGVLMAGGILTSNFSTTPTKQEDSRKGGTRVPNAVRSPADPVMKPPSPASSDGGVSPLARDDKVHQSS

Target ORF information:

RefSeq Version	NM_001082990.1
Organism	Danio rerio(zebrafish)
Definition	Danio rerio neurensin 1-like (nrsn1l), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_001082990.1

ORF Insert Sequence:

ATGGCCTCTT GCTCTGAGGT TTGTGGGTCT GGTCATGCTG TGGACTCTGG CTTTCGTGTT 
TTTGGAGTGC GCTCCTATTT ACACCACTTC TATGAGGAGT GCACCGCCTC AATGAGGGAG 
CAGCAGGAGG ATTTACAGGG CCAGAGATCA TCACTGCGGT GGAGCTCCAG CCTCTGGAAG 
GTCACTCTTG TCGTTGGTGT GGTGCTCCTG ACAGTGGGTT TGGTGGTCAT GACAGTGGGT 
TATGCCATTC CCACCCGCAT TGAAGCTTTC GGGGAGGGCG AGCTGCTGTT CGTGGACCGC 
CAAGCCATGC GCCACAATCA CTCCCTACAC ATTTGCGTTC TGGTTGGGAC GGGGCTTCTT 
ACTCTGGGCG GGGTTTTGAT GGCGGGAGGG ATCCTGACAT CCAACTTCTC CACCACTCCC 
ACTAAACAGG AAGATTCTCG AAAAGGGGGA ACCAGAGTCC CGAATGCAGT GAGAAGCCCG 
GCAGACCCTG TGATGAAGCC GCCCAGTCCG GCCTCTAGTG ATGGAGGAGT ATCCCCACTC 
GCTCGGGATG ATAAAGTTCA CCAGAGCTCA TGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

si:dkey-261i16.5 ( XM_005169993.3 ) cDNA ORF clone, Danio rerio(zebrafish) -> XP_005170050.1 Danio rerio si:dkey-261i16.5 (si:dkey-261i16.5), transcript variant X1, mRNA.

Price & Availability↑

CloneID	ODa24104
Clone ID Related Accession (Same CDS sequence)	XM_005169993.3 , NM_001082990.1 , XM_005169993.4
Accession Version	XM_005169993.3	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 573bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2016-06-23
Organism	Danio rerio(Zebrafish)
Product	uncharacterized protein LOC100007978 isoform X1
Comment	MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007130.6) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 24, 2016 this sequence version replaced XM_005169993.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END##

ATGGCCTCTT GCTCTGAGGT TTGTGGGTCT GGTCATGCTG TGGACTCTGG CTTTCGTGTT 
TTTGGAGTGC GCTCCTATTT ACACCACTTC TATGAGGAGT GCACCGCCTC AATGAGGGAG 
CAGCAGGAGG ATTTACAGGG CCAGAGATCA TCACTGCGGT GGAGCTCCAG CCTCTGGAAG 
GTCACTCTTG TCGTTGGTGT GGTGCTCCTG ACAGTGGGTT TGGTGGTCAT GACAGTGGGT 
TATGCCATTC CCACCCGCAT TGAAGCTTTC GGGGAGGGCG AGCTGCTGTT CGTGGACCGC 
CAAGCCATGC GCCACAATCA CTCCCTACAC ATTTGCGTTC TGGTTGGGAC GGGGCTTCTT 
ACTCTGGGCG GGGTTTTGAT GGCGGGAGGG ATCCTGACAT CCAACTTCTC CACCACTCCC 
ACTAAACAGG AAGATTCTCG AAAAGGGGGA ACCAGAGTCC CGAATGCAGT GAGAAGCCCG 
GCAGACCCTG TGATGAAGCC GCCCAGTCCG GCCTCTAGTG ATGGAGGAGT ATCCCCACTC 
GCTCGGGATG ATAAAGTTCA CCAGAGCTCA TGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	XP_005170050.1
CDS	104..676
Translation	MASCSEVCGSGHAVDSGFRVFGVRSYLHHFYEECTASMREQQEDLQGQRSSLRWSSSLWKVTLVVGVVLLTVGLVVMTVGYAIPTRIEAFGEGELLFVDRQAMRHNHSLHICVLVGTGLLTLGGVLMAGGILTSNFSTTPTKQEDSRKGGTRVPNAVRSPADPVMKPPSPASSDGGVSPLARDDKVHQSS

Target ORF information:

RefSeq Version	XM_005169993.3
Organism	Danio rerio(Zebrafish)
Definition	Danio rerio si:dkey-261i16.5 (si:dkey-261i16.5), transcript variant X1, mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

XM_005169993.3

ORF Insert Sequence:

ATGGCCTCTT GCTCTGAGGT TTGTGGGTCT GGTCATGCTG TGGACTCTGG CTTTCGTGTT 
TTTGGAGTGC GCTCCTATTT ACACCACTTC TATGAGGAGT GCACCGCCTC AATGAGGGAG 
CAGCAGGAGG ATTTACAGGG CCAGAGATCA TCACTGCGGT GGAGCTCCAG CCTCTGGAAG 
GTCACTCTTG TCGTTGGTGT GGTGCTCCTG ACAGTGGGTT TGGTGGTCAT GACAGTGGGT 
TATGCCATTC CCACCCGCAT TGAAGCTTTC GGGGAGGGCG AGCTGCTGTT CGTGGACCGC 
CAAGCCATGC GCCACAATCA CTCCCTACAC ATTTGCGTTC TGGTTGGGAC GGGGCTTCTT 
ACTCTGGGCG GGGTTTTGAT GGCGGGAGGG ATCCTGACAT CCAACTTCTC CACCACTCCC 
ACTAAACAGG AAGATTCTCG AAAAGGGGGA ACCAGAGTCC CGAATGCAGT GAGAAGCCCG 
GCAGACCCTG TGATGAAGCC GCCCAGTCCG GCCTCTAGTG ATGGAGGAGT ATCCCCACTC 
GCTCGGGATG ATAAAGTTCA CCAGAGCTCA TGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

si:dkey-261i16.5 ( XM_005169993.4 ) cDNA ORF clone, Danio rerio(zebrafish) -> XP_005170050.1 Danio rerio si:dkey-261i16.5 (si:dkey-261i16.5), transcript variant X1, mRNA.

Price & Availability↑

CloneID	ODa24104
Clone ID Related Accession (Same CDS sequence)	XM_005169993.3 , NM_001082990.1 , XM_005169993.4
Accession Version	XM_005169993.4 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 573bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2017-06-14
Organism	Danio rerio(zebrafish)
Product	uncharacterized protein LOC100007978 isoform X1
Comment	Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007130.7) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 15, 2017 this sequence version replaced XM_005169993.3. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END##

ATGGCCTCTT GCTCTGAGGT TTGTGGGTCT GGTCATGCTG TGGACTCTGG CTTTCGTGTT 
TTTGGAGTGC GCTCCTATTT ACACCACTTC TATGAGGAGT GCACCGCCTC AATGAGGGAG 
CAGCAGGAGG ATTTACAGGG CCAGAGATCA TCACTGCGGT GGAGCTCCAG CCTCTGGAAG 
GTCACTCTTG TCGTTGGTGT GGTGCTCCTG ACAGTGGGTT TGGTGGTCAT GACAGTGGGT 
TATGCCATTC CCACCCGCAT TGAAGCTTTC GGGGAGGGCG AGCTGCTGTT CGTGGACCGC 
CAAGCCATGC GCCACAATCA CTCCCTACAC ATTTGCGTTC TGGTTGGGAC GGGGCTTCTT 
ACTCTGGGCG GGGTTTTGAT GGCGGGAGGG ATCCTGACAT CCAACTTCTC CACCACTCCC 
ACTAAACAGG AAGATTCTCG AAAAGGGGGA ACCAGAGTCC CGAATGCAGT GAGAAGCCCG 
GCAGACCCTG TGATGAAGCC GCCCAGTCCG GCCTCTAGTG ATGGAGGAGT ATCCCCACTC 
GCTCGGGATG ATAAAGTTCA CCAGAGCTCA TGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	XP_005170050.1
CDS	112..684
Translation	MASCSEVCGSGHAVDSGFRVFGVRSYLHHFYEECTASMREQQEDLQGQRSSLRWSSSLWKVTLVVGVVLLTVGLVVMTVGYAIPTRIEAFGEGELLFVDRQAMRHNHSLHICVLVGTGLLTLGGVLMAGGILTSNFSTTPTKQEDSRKGGTRVPNAVRSPADPVMKPPSPASSDGGVSPLARDDKVHQSS

Target ORF information:

RefSeq Version	XM_005169993.4
Organism	Danio rerio(zebrafish)
Definition	Danio rerio si:dkey-261i16.5 (si:dkey-261i16.5), transcript variant X1, mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

XM_005169993.4

ORF Insert Sequence:

ATGGCCTCTT GCTCTGAGGT TTGTGGGTCT GGTCATGCTG TGGACTCTGG CTTTCGTGTT 
TTTGGAGTGC GCTCCTATTT ACACCACTTC TATGAGGAGT GCACCGCCTC AATGAGGGAG 
CAGCAGGAGG ATTTACAGGG CCAGAGATCA TCACTGCGGT GGAGCTCCAG CCTCTGGAAG 
GTCACTCTTG TCGTTGGTGT GGTGCTCCTG ACAGTGGGTT TGGTGGTCAT GACAGTGGGT 
TATGCCATTC CCACCCGCAT TGAAGCTTTC GGGGAGGGCG AGCTGCTGTT CGTGGACCGC 
CAAGCCATGC GCCACAATCA CTCCCTACAC ATTTGCGTTC TGGTTGGGAC GGGGCTTCTT 
ACTCTGGGCG GGGTTTTGAT GGCGGGAGGG ATCCTGACAT CCAACTTCTC CACCACTCCC 
ACTAAACAGG AAGATTCTCG AAAAGGGGGA ACCAGAGTCC CGAATGCAGT GAGAAGCCCG 
GCAGACCCTG TGATGAAGCC GCCCAGTCCG GCCTCTAGTG ATGGAGGAGT ATCCCCACTC 
GCTCGGGATG ATAAAGTTCA CCAGAGCTCA TGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PubMed

Evolution of complexity in the zebrafish synapse proteome.
Nature communications814613(2017 Mar)
Bay?s ?,Collins MO,Reig-Viader R,Gou G,Goulding D,Izquierdo A,Choudhary JS,Emes RD,Grant SG

Chronic perfluorooctanesulfonic acid exposure disrupts lipid metabolism in zebrafish.
Human & experimental toxicology36(3)207-217(2017 Mar)
Cui Y,Lv S,Liu J,Nie S,Chen J,Dong Q,Huang C,Yang D

Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.
BMC genomics17368(2016 05)
Pasquier J,Cabau C,Nguyen T,Jouanno E,Severac D,Braasch I,Journot L,Pontarotti P,Klopp C,Postlethwait JH,Guiguen Y,Bobe J

RFX transcription factors are essential for hearing in mice.
Nature communications68549(2015 Oct)
Elkon R,Milon B,Morrison L,Shah M,Vijayakumar S,Racherla M,Leitch CC,Silipino L,Hadi S,Weiss-Gayet M,Barras E,Schmid CD,Ait-Lounis A,Barnes A,Song Y,Eisenman DJ,Eliyahu E,Frolenkov GI,Strome SE,Durand B,Zaghloul NA,Jones SM,Reith W,Hertzano R

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si:dkey-261i16.5 cDNA ORF clone, Danio rerio(zebrafish)

Gene

Clones

gRNAs

Related articles in PubMed

Target ORF information:

Target ORF information:

ORF Insert Sequence:

Target ORF information:

Target ORF information:

ORF Insert Sequence:

Target ORF information:

Target ORF information:

ORF Insert Sequence:

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