Gene Symbol | SHH1 |
Entrez Gene ID | 838088 |
Full Name | SAWADEE HOMEODOMAIN protein |
Synonyms | DNA-binding transcription factor 1,DTF1,SAWADEE homeodomain homolog 1 |
Gene Type | protein-coding |
Organism | Arabidopsis thaliana(thale cress) |
ORF » Species Summary » Arabidopsis thaliana » SHH1 cDNA ORF clone
Gene Symbol | SHH1 |
Entrez Gene ID | 838088 |
Full Name | SAWADEE HOMEODOMAIN protein |
Synonyms | DNA-binding transcription factor 1,DTF1,SAWADEE homeodomain homolog 1 |
Gene Type | protein-coding |
Organism | Arabidopsis thaliana(thale cress) |
mRNA | Protein | Name |
---|---|---|
NM_001035971.2 | NP_001031048.1 | SAWADEE HOMEODOMAIN protein |
NM_001332155.1 | NP_001321872.1 | SAWADEE HOMEODOMAIN protein |
NM_179335.3 | NP_849666.2 | SAWADEE HOMEODOMAIN protein |
NM_001332154.1 | NP_001319007.1 | SAWADEE HOMEODOMAIN protein |
Arabidopsis thaliana (thale cress) | AT1G15215 | NP_849666.2 |
Oryza sativa (rice) | Os09g0346900 | NP_001062942.1 |
Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.
Theologis A, Ecker JR, Palm CJ, Federspiel NA, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman CL, Brooks SY, Buehler E, Chan A, Chao Q, Chen H, Cheuk RF, Chin CW, Chung MK, Conn L, Conway AB, Conway AR, Creasy TH, Dewar K, Dunn P, Etgu P, Feldblyum TV, Feng J, Fong B, Fujii CY, Gill JE, Goldsmith AD, Haas B, Hansen NF, Hughes B, Huizar L, Hunter JL, Jenkins J, Johnson-Hopson C, Khan S, Khaykin E, Kim CJ, Koo HL, Kremenetskaia I, Kurtz DB, Kwan A, Lam B, Langin-Hooper S, Lee A, Lee JM, Lenz CA, Li JH, Li Y, Lin X, Liu SX, Liu ZA, Luros JS, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman WC, Osborne BI, Pai G, Peterson J, Pham PK, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg SL, Schwartz JR, Shinn P, Southwick AM, Sun H, Tallon LJ, Tambunga G, Toriumi MJ, Town CD, Utterback T, Van Aken S, Vaysberg M, Vysotskaia VS, Walker M, Wu D, Yu G, Fraser CM, Venter JC, Davis RW
Nature408(6814)816-20(2000 Dec)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
central role for methylated H3K9 binding in SHH1 function; key residues within both lysine-binding pockets of SHH1 are required in vivo to maintain siRNA and DNA methylation levels as well as Pol-IV occupancy at RNA-directed DNA methylation targets.
Title: Polymerase IV occupancy at RNA-directed DNA methylation sites requires SHH1.
DTF1 interacts with CLSY1 to assist in the recruitment of Pol IV to RdDM target loci where H3K9 methylation may be an important feature. [DTF1]
Title: DTF1 is a core component of RNA-directed DNA methylation and may assist in the recruitment of Pol IV.
Data show that SHH1(AT1G15215), RDR2, CLASSY1, and RDM4 were co-purified with NRPD1(At1g63020), the largest subunit of Pol-IV.
Title: SHH1, a homeodomain protein required for DNA methylation, as well as RDR2, RDM4, and chromatin remodeling factors, associate with RNA polymerase IV.
The following SHH1 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the SHH1 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | OAb03409 | |
Clone ID Related Accession (Same CDS sequence) | NM_179335.3 | |
Accession Version | NM_179335.3 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 777bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-02-13 | |
Organism | Arabidopsis thaliana(thale cress) | |
Product | SAWADEE HOMEODOMAIN protein | |
Comment | Comment: REVIEWED REFSEQ: This record has been curated by TAIR and Araport. This record is derived from an annotated genomic sequence (NC_003070). On Sep 12, 2016 this sequence version replaced NM_179335.2. |
1 | ATGGCTGCTT CCGATGATTC CTCTCACTAT TTCACCGAGT TTACCTTGTC TGAGATTGTA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_849666.2 |
CDS | 53..829 |
Translation |
Target ORF information:
Target ORF information:
|
NM_179335.3 |
1 | ATGGCTGCTT CCGATGATTC CTCTCACTAT TTCACCGAGT TTACCTTGTC TGAGATTGTA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OAb03410 | |
Clone ID Related Accession (Same CDS sequence) | NM_001035971.2 | |
Accession Version | NM_001035971.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 759bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-02-13 | |
Organism | Arabidopsis thaliana(thale cress) | |
Product | SAWADEE HOMEODOMAIN protein | |
Comment | Comment: REVIEWED REFSEQ: This record has been curated by TAIR and Araport. This record is derived from an annotated genomic sequence (NC_003070). On Apr 24, 2008 this sequence version replaced NM_001035971.1. |
1 | ATGGCTGCTT CCGATGATTC CTCTCACTAT TTCACCGAGT TTACCTTGTC TGAGATTGTA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001031048.1 |
CDS | 32..790 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001035971.2 |
1 | ATGGCTGCTT CCGATGATTC CTCTCACTAT TTCACCGAGT TTACCTTGTC TGAGATTGTA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OAb32854 | |
Clone ID Related Accession (Same CDS sequence) | NM_001332154.1 | |
Accession Version | NM_001332154.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 492bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-02-13 | |
Organism | Arabidopsis thaliana(thale cress) | |
Product | SAWADEE HOMEODOMAIN protein | |
Comment | Comment: REVIEWED REFSEQ: This record has been curated by TAIR and Araport. This record is derived from an annotated genomic sequence (NC_003070). COMPLETENESS: incomplete on the 3' end. |
1 | ATGGCTGCTT CCGATGATTC CTCTCACTAT TTCACCGAGT TTACCTTGTC TGAGATTGTA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001319007.1 |
CDS | 53..544 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001332154.1 |
1 | ATGGCTGCTT CCGATGATTC CTCTCACTAT TTCACCGAGT TTACCTTGTC TGAGATTGTA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OAb33524 | |
Clone ID Related Accession (Same CDS sequence) | NM_001332155.1 | |
Accession Version | NM_001332155.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 795bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-02-13 | |
Organism | Arabidopsis thaliana(thale cress) | |
Product | SAWADEE HOMEODOMAIN protein | |
Comment | Comment: REVIEWED REFSEQ: This record has been curated by TAIR and Araport. This record is derived from an annotated genomic sequence (NC_003070). COMPLETENESS: incomplete on the 3' end. |
1 | ATGGCTGCTT CCGATGATTC CTCTCACTAT TTCACCGAGT TTACCTTGTC TGAGATTGTA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001321872.1 |
CDS | 53..847 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001332155.1 |
1 | ATGGCTGCTT CCGATGATTC CTCTCACTAT TTCACCGAGT TTACCTTGTC TGAGATTGTA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. |