Gene Symbol | LBA1 |
Entrez Gene ID | 834747 |
Full Name | RNA helicase |
Synonyms | ATUPF1,LOW-LEVEL BETA-AMYLASE 1,MQD22.15,MQD22_15,UPF1 |
Gene Type | protein-coding |
Organism | Arabidopsis thaliana(thale cress) |
ORF » Species Summary » Arabidopsis thaliana » LBA1 cDNA ORF clone
Gene Symbol | LBA1 |
Entrez Gene ID | 834747 |
Full Name | RNA helicase |
Synonyms | ATUPF1,LOW-LEVEL BETA-AMYLASE 1,MQD22.15,MQD22_15,UPF1 |
Gene Type | protein-coding |
Organism | Arabidopsis thaliana(thale cress) |
mRNA | Protein | Name |
---|---|---|
NM_124072.3 | NP_199512.2 | RNA helicase |
Pan troglodytes (chimpanzee) | UPF1 | XP_512972.4 |
Mus musculus (house mouse) | Upf1 | NP_001116301.1 |
Eremothecium gossypii | AGOS_ABR022C | NP_982968.4 |
LOC720288 | XP_002808229.1 | |
Canis lupus familiaris (dog) | UPF1 | XP_005632737.1 |
Bos taurus (cattle) | UPF1 | XP_005208537.1 |
Saccharomyces cerevisiae (baker's yeast) | NAM7 | NP_013797.1 |
Schizosaccharomyces pombe (fission yeast) | upf1 | NP_593080.1 |
Magnaporthe oryzae (rice blast fungus) | MGG_00976 | XP_003717973.1 |
Gallus gallus (chicken) | UPF1 | XP_418237.3 |
Danio rerio (zebrafish) | upf1 | NP_998639.1 |
Drosophila melanogaster (fruit fly) | Upf1 | NP_572767.1 |
Oryza sativa (rice) | Os07g0495900 | NP_001059698.1 |
Homo sapiens (human) | UPF1 | NP_002902.2 |
Anopheles gambiae (African malaria mosquito) | AgaP_AGAP001133 | XP_322028.4 |
Caenorhabditis elegans (roundworm) | smg-2 | NP_490829.1 |
Kluyveromyces lactis | KLLA0B06435g | XP_451821.1 |
Neurospora crassa | NCU04242 | XP_961233.1 |
Rattus norvegicus (Norway rat) | Upf1 | XP_003751614.1 |
Arabidopsis thaliana (thale cress) | LBA1 | NP_199512.2 |
Xenopus tropicalis (tropical clawed frog) | upf1 | XP_002938872.2 |
Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.
Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See LH, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie WR, Wilson RK, Murphy G, Bancroft I, Volckaert G, Wambutt R, D?sterh?ft A, Stiekema W, Pohl T, Entian KD, Terryn N, Hartley N, Bent E, Johnson S, Langham SA, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst RK, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes HW, Bevan M, Fransz P, , ,
Nature408(6814)823-6(2000 Dec)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The involvement of UPF1, UPF2, and UPF3 in development and in response to stresses, wounding and infection by Pseudomonas syringae pv. tomato strain DC3000, were examined.
Title: Arabidopsis plants having defects in nonsense-mediated mRNA decay factors UPF1, UPF2, and UPF3 show photoperiod-dependent phenotypes in development and stress responses.
UPF1 and UPF3, which are key nonsense-mediated mRNA decay factors, may act as defense-related regulators associated with plant immunity.
Title: Nonsense-mediated mRNA decay factors, UPF1 and UPF3, contribute to plant defense.
Data show that in mutants impaired in the nonsense-mediated decay (NMD) components UPF1, levels of the alternatively spliced AtGRP7 and AtGRP8 transcripts are strongly elevated, implicating UPF1 in the decay of these clock-regulated transcripts.
Title: Auto-regulation of the circadian slave oscillator component AtGRP7 and regulation of its targets is impaired by a single RNA recognition motif point mutation.
Nonsense-mediated mRNA decay and RNA interference (RNAi) in plants requires UPF1. [UPF1]
Title: UPF1 is required for nonsense-mediated mRNA decay (NMD) and RNAi in Arabidopsis.
lba1 is a missense mutation of UPF1 RNA helicase involved in nonsense-mediated mRNA decay
Title: The lba1 mutation of UPF1 RNA helicase involved in nonsense-mediated mRNA decay causes pleiotropic phenotypic changes and altered sugar signalling in Arabidopsis.
The following LBA1 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the LBA1 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | OAb20786 | |
Clone ID Related Accession (Same CDS sequence) | NM_124072.3 | |
Accession Version | NM_124072.3 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 3765bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-02-13 | |
Organism | Arabidopsis thaliana(thale cress) | |
Product | RNA helicase | |
Comment | Comment: REVIEWED REFSEQ: This record has been curated by TAIR and Araport. This record is derived from an annotated genomic sequence (NC_003076). On Sep 12, 2016 this sequence version replaced NM_124072.2. |
1 | ATGGATTCTC AACAGAGCGA TCTCTTTGAC ACCGCATCGC AGCCGGACAC GGTGGCCGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_199512.2 |
CDS | 186..3950 |
Translation |
Target ORF information:
Target ORF information:
|
NM_124072.3 |
1 | ATGGATTCTC AACAGAGCGA TCTCTTTGAC ACCGCATCGC AGCCGGACAC GGTGGCCGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. |