AT5G43560 cDNA ORF clone, Arabidopsis thaliana(thale cress)

Gene
Clones
gRNAs

Summary

Gene Symbol	AT5G43560
Entrez Gene ID	834376
Full Name	TRAF-like superfamily protein
Synonyms	K9D7.6,K9D7_6
Gene Type	protein-coding
Organism	Arabidopsis thaliana(thale cress)

mRNA and Protein(s)

mRNA	Protein	Name
NM_123722.5	NP_199169.1	TRAF-like superfamily protein
NM_180794.5	NP_851125.1	TRAF-like superfamily protein

Pathways from BioSystems

Homologies

Oryza sativa (rice)	Os05g0508700	NP_001055997.1
Arabidopsis thaliana (thale cress)	AT5G43560	NP_199169.1
Arabidopsis thaliana (thale cress)	AT1G04300	NP_001077455.1
Oryza sativa (rice)	Os01g0775300	NP_001044408.2

Gene Ontology
Bibliography

Related articles in PubMed

Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.
Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T, Hosouchi T, Kawashima K, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Naruo K, Okumura S, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Sato S, de la Bastide M, Huang E, Spiegel L, Gnoj L, O'Shaughnessy A, Preston R, Habermann K, Murray J, Johnson D, Rohlfing T, Nelson J, Stoneking T, Pepin K, Spieth J, Sekhon M, Armstrong J, Becker M, Belter E, Cordum H, Cordes M, Courtney L, Courtney W, Dante M, Du H, Edwards J, Fryman J, Haakensen B, Lamar E, Latreille P, Leonard S, Meyer R, Mulvaney E, Ozersky P, Riley A, Strowmatt C, Wagner-McPherson C, Wollam A, Yoakum M, Bell M, Dedhia N, Parnell L, Shah R, Rodriguez M, See LH, Vil D, Baker J, Kirchoff K, Toth K, King L, Bahret A, Miller B, Marra M, Martienssen R, McCombie WR, Wilson RK, Murphy G, Bancroft I, Volckaert G, Wambutt R, D?sterh?ft A, Stiekema W, Pohl T, Entian KD, Terryn N, Hartley N, Bent E, Johnson S, Langham SA, McCullagh B, Robben J, Grymonprez B, Zimmermann W, Ramsperger U, Wedler H, Balke K, Wedler E, Peters S, van Staveren M, Dirkse W, Mooijman P, Lankhorst RK, Weitzenegger T, Bothe G, Rose M, Hauf J, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Villarroel R, Gielen J, Ardiles W, Bents O, Lemcke K, Kolesov G, Mayer K, Rudd S, Schoof H, Schueller C, Zaccaria P, Mewes HW, Bevan M, Fransz P, , ,
Nature408(6814)823-6(2000 Dec)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

MUSE13 and MUSE14 contribute to the turnover of nucleotide-binding domain and leucine-rich repeat-containing (NLR) immune receptors SNC1 and RPS2.
Title: Plant TRAF Proteins Regulate NLR Immune Receptor Turnover.

The following AT5G43560 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the AT5G43560 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)	Select
OAb20441	NM_123722.5 Latest version!	Arabidopsis thaliana TRAF-like superfamily protein (AT5G43560), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	20	$629.30 $899.00
OAb20441	NM_180794.5 Latest version!	Arabidopsis thaliana TRAF-like superfamily protein (AT5G43560), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	20	$629.30 $899.00

ORF Online Only Promotion

Next-day Shipping ORF Clones ( in default vector with tag)
1 Clone	30% OFF
2-4 Clone	40% OFF
5 or more Clone	50% OFF
All Other ORF Clones
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*Business Day

** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

AT5G43560 ( NM_123722.5 ) cDNA ORF clone, Arabidopsis thaliana(thale cress) -> NP_199169.1 Arabidopsis thaliana TRAF-like superfamily protein (AT5G43560), mRNA.

Price & Availability↑

CloneID	OAb20441
Clone ID Related Accession (Same CDS sequence)	NM_123722.5 , NM_180794.5
Accession Version	NM_123722.5 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 3168bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2019-02-13
Organism	Arabidopsis thaliana(thale cress)
Product	TRAF-like superfamily protein
Comment	Comment: REVIEWED REFSEQ: This record has been curated by TAIR and Araport. This record is derived from an annotated genomic sequence (NC_003076). On Sep 12, 2016 this sequence version replaced NM_123722.4.

ATGTCAGAGA GTACTAATGA AGATAGTGGA GCAGGAAGAT CATCACTGGA AGAGAATTCA 
AATGGACAAA GAAGTCAATC AGAAGAAGCA ATCGCTGAGT GGCGTTCTTC TGAACAAGTT 
GAGAATGGAA CTCCTTCTAC ATCTCCACCG TATTGGGACA TCGATGATGA TGACGATTTT 
GGATCAAAAC CATCTCAACT ATTTGGGAAA AATACTTGGA CGATTGAGAA ATTTTCAGAT 
ATCAACAAAC GAGAGCTCCG CGGCGATGTT TTTGAAGTCG GGGGTTACAA ATGGTATATA 
TTAATTTATC CACAAGGGTG TGATGTTTGC AACCATCTCT CTTTGTTTCT ATGTGTTGCA 
CACCATGAAA AGCTTCTTCC AGGCTGGAGT CATTTTGCTC AGTTTACTAT AGCTGTGTCG 
AATAAAGATC CGAAGAAGTC AAAGCATTCA GATACGTTAC ACCGGTTTTG GAAGAAAGAG 
CATGATTGGG GTTGGAAGAA ATTTATTGAG TTACCTAAAT TGAAGGAAGG GTTTATAGAT 
GATTCTGGTT GTCTTACAAT TAAAGCTCAA GTGCAGGTGA TCAGAGAGAG AGTGGACCGA 
CCTTTTCGCT GCCTTCATTA TAAATATAGG GAGGAACTTG TTAGGGTGTA TTTGGGAAAT 
GTAGAGCAAA TTTGCTGGCG GTTTGTGGAA GAGAAAAGAA GCAAGCTTGG TAGGTTGATA 
GAGGACAAGG CAAAATGGAA AAGCTTCTGT GCTTTCTGGA TGGGGTTGGA CCAAAATTCA 
AGGCGTCGAA TGTCCCGAGA GAAAATGGAT GTGATTCTAA AAATAGTTGT AAAACACTTC 
TTTGTCGAGA AGGAAGTTAC ATCTACTTTG GTGATGGATT CCTTGTATAG TGGATTGAAG 
GCTCTTGAAG GCCAAAATAA GAACAAGGAG AGTAGGCCGA GACTAATGGA TACTGAAGAA 
TCCACAGCTC CAATTGTTAG CGTGGACAAA GATTCGTTTG CATTAGTTGA TGATGTGTTA 
TTACTCTTAG AGAAGGCTGC TCTGGAGCCA TTGCCTAAAA AAGAGGAAAA GAGTTCTCAA 
AACCGTACGA AGGATGGGAA TGCTGGAGAG GAATTCAGTA GAGAAGCCGT TGAGCGTGAT 
GATAGGCGTT TAACTGAATT GGGTAGACGG ACTGTGGAGA TATTTGTTCT TGCACATATC 
TTCAGCAACA AAATTGAAGT TGCATACCAA GAAGCTATTG CATGGAAAAG GCAAGAAGAA 
CTTATTCGTG AAGAAGAGGA AGCGTGGCTG GCAGAAAGCG AACAGAAGGG CAAAAGAGGA 
GCATCTGAAA AAGAGAAGAA ATCTAAGAAG AAACAGGCGA AACAGAAAAA GAACAAAAAC 
AAAGGAAAGG AAATGAGGAA AGAAGACAAG GTGAGAACCC AAACAGAAGA AAGGGAAATT 
GAGAAAGAGG AATGTGTGAG AGCGATAGCA GAATCGTCAG CTGAAAAACC TGACACACTT 
GGAGATGTCT CTGACGTGTC TGATTCAGTA GATAGTTCAG CTGAAATACT TCAGCTTGAT 
TCAGAAGATA GAGAGAGTAG TCCTGTTCAT TGGGAAATGG ATGCCTCAGA GGTTCATCCT 
CCTTCTGCAG GAGACACTAG CAGAGGAAGA GGCAATTCTT TTTCTATACC TAATGGAGTT 
GCAGAAAGAA AGGGTCTGTC CACAATGGAT GATAGTTCTT CAACCTGTTC TAATGACTCG 
ATTCAATCAG GGGTAGCCAA TGGGTCATAC AAAGGGAATG TATTAAATTG CCAAAGCCAA 
AAGTGGTTTA GCAATGGAAA AATACAACCA GGAAAAGTAT CTGATTCCAA CAGTTTAGCC 
AGTGAAAAAG AGCATCAACC TTCAAGACTT GCATCTGACC CTAAAAATCA GAGCCATTCT 
TCTGATATAC GCAGAGTTGG TGAAGCTGAC ATAGTTATCT CCCACATTCA AAAACCAGAG 
AGCCCTAAGG AACGTAGTCC TGTTAGCAAG GATCCCAACA TGATTCAGAT GAAAGAGAAA 
AGTGCTGCGG TACTTTCCCC ATCCAGAGCT GCTCCTTGGA ATCCTCCGTC TCCAGTGCAA 
GCAAAACCGG AGAAAAAGGG TGTTTCAAAT GTAGAGGCGG TTCCAAACAG GAAAGTCATA 
TCTGTTAAAT CACCTTCATC ACATCATGCA TCACCATCTC GTGAAGCTCA GTTGCAAACA 
GTGGGTCCTA GAGCTGATAT ACAGAAAATC GCTTCTCCGA AACCTGTGGA ACAACCAGCA 
CCTCCTATGT CAAGGCCTTT GAGTGCTCCT ATAATCCCTC CAACGCAAGC TGCACCTGTA 
ATATCTGCTG TTCAAACCTC GACTGCGTCC CTTGCTCGTT CAATGAGCTC AACAGGGCGT 
TTAGGTTCAC CGACACATAG CCAAGCTTAC AATCCTCAAT CCTACAAACA TGCCATAGTG 
GGTTCATCTG GTTTCACCCA CCCAAGCTCT CAATCGAGTG GAACAAGCAC ATTGCCGCCT 
TATTCACATC CGTCTCCTAT CTCAGTATCA AATCAGTCTG GTTTCCCTAT CAATGTTGGC 
TCTTGGGATG TTTCTTCTGG TGGGCTATTG TGGACCGGTG GTTCGAGTTC AACCAGAGAT 
ACAACAACAA CCATCAGCGG GAATCACAAA ACAAACACTT ACAACGCACC CGTAGTAACT 
ACCAGCATCA GGCCTACTAA TGTTCAGATA GGGAGAACGG CACAGAGTCT GATGACCGAT 
GAGTTCCCTC ACCTTGATAT CATCAATGAT CTGCTTGCAG ACGAACACGG TACAATGGAT 
AATAGCGTAT ACCGTGTACC ACAACAGTTC AACAACCAGT ACTCATATCA TGGCGGTGCG 
GATCTCGGGA TCTCTAGCAG GTCTAGGAGT TACAGTGATG ATGGATTTCA CCAGTCTTAC 
GGTGAATACA TGCCACATTC TGCTTCTTCC TCGCCATATG GTAATGGGCA AACACAATCG 
CAATGGCAGA TGGCAAATAT GGATTTCTCT TTACCGGCTA TGAGGAACCA AGACGATGTA 
TCAGCATCAG CAACAGCTAC TTACTCTTAC TTTGATTTAG ATTCATCAAA CCCGAATTTG 
TCTGGAATCA ACGGCTATAG GGACTTCAGG CCATCGAACG GACACTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_199169.1
CDS	183..3350
Translation	MSESTNEDSGAGRSSLEENSNGQRSQSEEAIAEWRSSEQVENGTPSTSPPYWDIDDDDDFGSKPSQLFGKNTWTIEKFSDINKRELRGDVFEVGGYKWYILIYPQGCDVCNHLSLFLCVAHHEKLLPGWSHFAQFTIAVSNKDPKKSKHSDTLHRFWKKEHDWGWKKFIELPKLKEGFIDDSGCLTIKAQVQVIRERVDRPFRCLHYKYREELVRVYLGNVEQICWRFVEEKRSKLGRLIEDKAKWKSFCAFWMGLDQNSRRRMSREKMDVILKIVVKHFFVEKEVTSTLVMDSLYSGLKALEGQNKNKESRPRLMDTEESTAPIVSVDKDSFALVDDVLLLLEKAALEPLPKKEEKSSQNRTKDGNAGEEFSREAVERDDRRLTELGRRTVEIFVLAHIFSNKIEVAYQEAIAWKRQEELIREEEEAWLAESEQKGKRGASEKEKKSKKKQAKQKKNKNKGKEMRKEDKVRTQTEEREIEKEECVRAIAESSAEKPDTLGDVSDVSDSVDSSAEILQLDSEDRESSPVHWEMDASEVHPPSAGDTSRGRGNSFSIPNGVAERKGLSTMDDSSSTCSNDSIQSGVANGSYKGNVLNCQSQKWFSNGKIQPGKVSDSNSLASEKEHQPSRLASDPKNQSHSSDIRRVGEADIVISHIQKPESPKERSPVSKDPNMIQMKEKSAAVLSPSRAAPWNPPSPVQAKPEKKGVSNVEAVPNRKVISVKSPSSHHASPSREAQLQTVGPRADIQKIASPKPVEQPAPPMSRPLSAPIIPPTQAAPVISAVQTSTASLARSMSSTGRLGSPTHSQAYNPQSYKHAIVGSSGFTHPSSQSSGTSTLPPYSHPSPISVSNQSGFPINVGSWDVSSGGLLWTGGSSSTRDTTTTISGNHKTNTYNAPVVTTSIRPTNVQIGRTAQSLMTDEFPHLDIINDLLADEHGTMDNSVYRVPQQFNNQYSYHGGADLGISSRSRSYSDDGFHQSYGEYMPHSASSSPYGNGQTQSQWQMANMDFSLPAMRNQDDVSASATATYSYFDLDSSNPNLSGINGYRDFRPSNGH

Target ORF information:

RefSeq Version	NM_123722.5
Organism	Arabidopsis thaliana(thale cress)
Definition	Arabidopsis thaliana TRAF-like superfamily protein (AT5G43560), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_123722.5

ORF Insert Sequence:

ATGTCAGAGA GTACTAATGA AGATAGTGGA GCAGGAAGAT CATCACTGGA AGAGAATTCA 
AATGGACAAA GAAGTCAATC AGAAGAAGCA ATCGCTGAGT GGCGTTCTTC TGAACAAGTT 
GAGAATGGAA CTCCTTCTAC ATCTCCACCG TATTGGGACA TCGATGATGA TGACGATTTT 
GGATCAAAAC CATCTCAACT ATTTGGGAAA AATACTTGGA CGATTGAGAA ATTTTCAGAT 
ATCAACAAAC GAGAGCTCCG CGGCGATGTT TTTGAAGTCG GGGGTTACAA ATGGTATATA 
TTAATTTATC CACAAGGGTG TGATGTTTGC AACCATCTCT CTTTGTTTCT ATGTGTTGCA 
CACCATGAAA AGCTTCTTCC AGGCTGGAGT CATTTTGCTC AGTTTACTAT AGCTGTGTCG 
AATAAAGATC CGAAGAAGTC AAAGCATTCA GATACGTTAC ACCGGTTTTG GAAGAAAGAG 
CATGATTGGG GTTGGAAGAA ATTTATTGAG TTACCTAAAT TGAAGGAAGG GTTTATAGAT 
GATTCTGGTT GTCTTACAAT TAAAGCTCAA GTGCAGGTGA TCAGAGAGAG AGTGGACCGA 
CCTTTTCGCT GCCTTCATTA TAAATATAGG GAGGAACTTG TTAGGGTGTA TTTGGGAAAT 
GTAGAGCAAA TTTGCTGGCG GTTTGTGGAA GAGAAAAGAA GCAAGCTTGG TAGGTTGATA 
GAGGACAAGG CAAAATGGAA AAGCTTCTGT GCTTTCTGGA TGGGGTTGGA CCAAAATTCA 
AGGCGTCGAA TGTCCCGAGA GAAAATGGAT GTGATTCTAA AAATAGTTGT AAAACACTTC 
TTTGTCGAGA AGGAAGTTAC ATCTACTTTG GTGATGGATT CCTTGTATAG TGGATTGAAG 
GCTCTTGAAG GCCAAAATAA GAACAAGGAG AGTAGGCCGA GACTAATGGA TACTGAAGAA 
TCCACAGCTC CAATTGTTAG CGTGGACAAA GATTCGTTTG CATTAGTTGA TGATGTGTTA 
TTACTCTTAG AGAAGGCTGC TCTGGAGCCA TTGCCTAAAA AAGAGGAAAA GAGTTCTCAA 
AACCGTACGA AGGATGGGAA TGCTGGAGAG GAATTCAGTA GAGAAGCCGT TGAGCGTGAT 
GATAGGCGTT TAACTGAATT GGGTAGACGG ACTGTGGAGA TATTTGTTCT TGCACATATC 
TTCAGCAACA AAATTGAAGT TGCATACCAA GAAGCTATTG CATGGAAAAG GCAAGAAGAA 
CTTATTCGTG AAGAAGAGGA AGCGTGGCTG GCAGAAAGCG AACAGAAGGG CAAAAGAGGA 
GCATCTGAAA AAGAGAAGAA ATCTAAGAAG AAACAGGCGA AACAGAAAAA GAACAAAAAC 
AAAGGAAAGG AAATGAGGAA AGAAGACAAG GTGAGAACCC AAACAGAAGA AAGGGAAATT 
GAGAAAGAGG AATGTGTGAG AGCGATAGCA GAATCGTCAG CTGAAAAACC TGACACACTT 
GGAGATGTCT CTGACGTGTC TGATTCAGTA GATAGTTCAG CTGAAATACT TCAGCTTGAT 
TCAGAAGATA GAGAGAGTAG TCCTGTTCAT TGGGAAATGG ATGCCTCAGA GGTTCATCCT 
CCTTCTGCAG GAGACACTAG CAGAGGAAGA GGCAATTCTT TTTCTATACC TAATGGAGTT 
GCAGAAAGAA AGGGTCTGTC CACAATGGAT GATAGTTCTT CAACCTGTTC TAATGACTCG 
ATTCAATCAG GGGTAGCCAA TGGGTCATAC AAAGGGAATG TATTAAATTG CCAAAGCCAA 
AAGTGGTTTA GCAATGGAAA AATACAACCA GGAAAAGTAT CTGATTCCAA CAGTTTAGCC 
AGTGAAAAAG AGCATCAACC TTCAAGACTT GCATCTGACC CTAAAAATCA GAGCCATTCT 
TCTGATATAC GCAGAGTTGG TGAAGCTGAC ATAGTTATCT CCCACATTCA AAAACCAGAG 
AGCCCTAAGG AACGTAGTCC TGTTAGCAAG GATCCCAACA TGATTCAGAT GAAAGAGAAA 
AGTGCTGCGG TACTTTCCCC ATCCAGAGCT GCTCCTTGGA ATCCTCCGTC TCCAGTGCAA 
GCAAAACCGG AGAAAAAGGG TGTTTCAAAT GTAGAGGCGG TTCCAAACAG GAAAGTCATA 
TCTGTTAAAT CACCTTCATC ACATCATGCA TCACCATCTC GTGAAGCTCA GTTGCAAACA 
GTGGGTCCTA GAGCTGATAT ACAGAAAATC GCTTCTCCGA AACCTGTGGA ACAACCAGCA 
CCTCCTATGT CAAGGCCTTT GAGTGCTCCT ATAATCCCTC CAACGCAAGC TGCACCTGTA 
ATATCTGCTG TTCAAACCTC GACTGCGTCC CTTGCTCGTT CAATGAGCTC AACAGGGCGT 
TTAGGTTCAC CGACACATAG CCAAGCTTAC AATCCTCAAT CCTACAAACA TGCCATAGTG 
GGTTCATCTG GTTTCACCCA CCCAAGCTCT CAATCGAGTG GAACAAGCAC ATTGCCGCCT 
TATTCACATC CGTCTCCTAT CTCAGTATCA AATCAGTCTG GTTTCCCTAT CAATGTTGGC 
TCTTGGGATG TTTCTTCTGG TGGGCTATTG TGGACCGGTG GTTCGAGTTC AACCAGAGAT 
ACAACAACAA CCATCAGCGG GAATCACAAA ACAAACACTT ACAACGCACC CGTAGTAACT 
ACCAGCATCA GGCCTACTAA TGTTCAGATA GGGAGAACGG CACAGAGTCT GATGACCGAT 
GAGTTCCCTC ACCTTGATAT CATCAATGAT CTGCTTGCAG ACGAACACGG TACAATGGAT 
AATAGCGTAT ACCGTGTACC ACAACAGTTC AACAACCAGT ACTCATATCA TGGCGGTGCG 
GATCTCGGGA TCTCTAGCAG GTCTAGGAGT TACAGTGATG ATGGATTTCA CCAGTCTTAC 
GGTGAATACA TGCCACATTC TGCTTCTTCC TCGCCATATG GTAATGGGCA AACACAATCG 
CAATGGCAGA TGGCAAATAT GGATTTCTCT TTACCGGCTA TGAGGAACCA AGACGATGTA 
TCAGCATCAG CAACAGCTAC TTACTCTTAC TTTGATTTAG ATTCATCAAA CCCGAATTTG 
TCTGGAATCA ACGGCTATAG GGACTTCAGG CCATCGAACG GACACTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

AT5G43560 ( NM_180794.5 ) cDNA ORF clone, Arabidopsis thaliana(thale cress) -> NP_851125.1 Arabidopsis thaliana TRAF-like superfamily protein (AT5G43560), mRNA.

Price & Availability↑

CloneID	OAb20441
Clone ID Related Accession (Same CDS sequence)	NM_123722.5 , NM_180794.5
Accession Version	NM_180794.5 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 3168bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2019-02-13
Organism	Arabidopsis thaliana(thale cress)
Product	TRAF-like superfamily protein
Comment	Comment: REVIEWED REFSEQ: This record has been curated by TAIR and Araport. This record is derived from an annotated genomic sequence (NC_003076). On Sep 12, 2016 this sequence version replaced NM_180794.4.

ATGTCAGAGA GTACTAATGA AGATAGTGGA GCAGGAAGAT CATCACTGGA AGAGAATTCA 
AATGGACAAA GAAGTCAATC AGAAGAAGCA ATCGCTGAGT GGCGTTCTTC TGAACAAGTT 
GAGAATGGAA CTCCTTCTAC ATCTCCACCG TATTGGGACA TCGATGATGA TGACGATTTT 
GGATCAAAAC CATCTCAACT ATTTGGGAAA AATACTTGGA CGATTGAGAA ATTTTCAGAT 
ATCAACAAAC GAGAGCTCCG CGGCGATGTT TTTGAAGTCG GGGGTTACAA ATGGTATATA 
TTAATTTATC CACAAGGGTG TGATGTTTGC AACCATCTCT CTTTGTTTCT ATGTGTTGCA 
CACCATGAAA AGCTTCTTCC AGGCTGGAGT CATTTTGCTC AGTTTACTAT AGCTGTGTCG 
AATAAAGATC CGAAGAAGTC AAAGCATTCA GATACGTTAC ACCGGTTTTG GAAGAAAGAG 
CATGATTGGG GTTGGAAGAA ATTTATTGAG TTACCTAAAT TGAAGGAAGG GTTTATAGAT 
GATTCTGGTT GTCTTACAAT TAAAGCTCAA GTGCAGGTGA TCAGAGAGAG AGTGGACCGA 
CCTTTTCGCT GCCTTCATTA TAAATATAGG GAGGAACTTG TTAGGGTGTA TTTGGGAAAT 
GTAGAGCAAA TTTGCTGGCG GTTTGTGGAA GAGAAAAGAA GCAAGCTTGG TAGGTTGATA 
GAGGACAAGG CAAAATGGAA AAGCTTCTGT GCTTTCTGGA TGGGGTTGGA CCAAAATTCA 
AGGCGTCGAA TGTCCCGAGA GAAAATGGAT GTGATTCTAA AAATAGTTGT AAAACACTTC 
TTTGTCGAGA AGGAAGTTAC ATCTACTTTG GTGATGGATT CCTTGTATAG TGGATTGAAG 
GCTCTTGAAG GCCAAAATAA GAACAAGGAG AGTAGGCCGA GACTAATGGA TACTGAAGAA 
TCCACAGCTC CAATTGTTAG CGTGGACAAA GATTCGTTTG CATTAGTTGA TGATGTGTTA 
TTACTCTTAG AGAAGGCTGC TCTGGAGCCA TTGCCTAAAA AAGAGGAAAA GAGTTCTCAA 
AACCGTACGA AGGATGGGAA TGCTGGAGAG GAATTCAGTA GAGAAGCCGT TGAGCGTGAT 
GATAGGCGTT TAACTGAATT GGGTAGACGG ACTGTGGAGA TATTTGTTCT TGCACATATC 
TTCAGCAACA AAATTGAAGT TGCATACCAA GAAGCTATTG CATGGAAAAG GCAAGAAGAA 
CTTATTCGTG AAGAAGAGGA AGCGTGGCTG GCAGAAAGCG AACAGAAGGG CAAAAGAGGA 
GCATCTGAAA AAGAGAAGAA ATCTAAGAAG AAACAGGCGA AACAGAAAAA GAACAAAAAC 
AAAGGAAAGG AAATGAGGAA AGAAGACAAG GTGAGAACCC AAACAGAAGA AAGGGAAATT 
GAGAAAGAGG AATGTGTGAG AGCGATAGCA GAATCGTCAG CTGAAAAACC TGACACACTT 
GGAGATGTCT CTGACGTGTC TGATTCAGTA GATAGTTCAG CTGAAATACT TCAGCTTGAT 
TCAGAAGATA GAGAGAGTAG TCCTGTTCAT TGGGAAATGG ATGCCTCAGA GGTTCATCCT 
CCTTCTGCAG GAGACACTAG CAGAGGAAGA GGCAATTCTT TTTCTATACC TAATGGAGTT 
GCAGAAAGAA AGGGTCTGTC CACAATGGAT GATAGTTCTT CAACCTGTTC TAATGACTCG 
ATTCAATCAG GGGTAGCCAA TGGGTCATAC AAAGGGAATG TATTAAATTG CCAAAGCCAA 
AAGTGGTTTA GCAATGGAAA AATACAACCA GGAAAAGTAT CTGATTCCAA CAGTTTAGCC 
AGTGAAAAAG AGCATCAACC TTCAAGACTT GCATCTGACC CTAAAAATCA GAGCCATTCT 
TCTGATATAC GCAGAGTTGG TGAAGCTGAC ATAGTTATCT CCCACATTCA AAAACCAGAG 
AGCCCTAAGG AACGTAGTCC TGTTAGCAAG GATCCCAACA TGATTCAGAT GAAAGAGAAA 
AGTGCTGCGG TACTTTCCCC ATCCAGAGCT GCTCCTTGGA ATCCTCCGTC TCCAGTGCAA 
GCAAAACCGG AGAAAAAGGG TGTTTCAAAT GTAGAGGCGG TTCCAAACAG GAAAGTCATA 
TCTGTTAAAT CACCTTCATC ACATCATGCA TCACCATCTC GTGAAGCTCA GTTGCAAACA 
GTGGGTCCTA GAGCTGATAT ACAGAAAATC GCTTCTCCGA AACCTGTGGA ACAACCAGCA 
CCTCCTATGT CAAGGCCTTT GAGTGCTCCT ATAATCCCTC CAACGCAAGC TGCACCTGTA 
ATATCTGCTG TTCAAACCTC GACTGCGTCC CTTGCTCGTT CAATGAGCTC AACAGGGCGT 
TTAGGTTCAC CGACACATAG CCAAGCTTAC AATCCTCAAT CCTACAAACA TGCCATAGTG 
GGTTCATCTG GTTTCACCCA CCCAAGCTCT CAATCGAGTG GAACAAGCAC ATTGCCGCCT 
TATTCACATC CGTCTCCTAT CTCAGTATCA AATCAGTCTG GTTTCCCTAT CAATGTTGGC 
TCTTGGGATG TTTCTTCTGG TGGGCTATTG TGGACCGGTG GTTCGAGTTC AACCAGAGAT 
ACAACAACAA CCATCAGCGG GAATCACAAA ACAAACACTT ACAACGCACC CGTAGTAACT 
ACCAGCATCA GGCCTACTAA TGTTCAGATA GGGAGAACGG CACAGAGTCT GATGACCGAT 
GAGTTCCCTC ACCTTGATAT CATCAATGAT CTGCTTGCAG ACGAACACGG TACAATGGAT 
AATAGCGTAT ACCGTGTACC ACAACAGTTC AACAACCAGT ACTCATATCA TGGCGGTGCG 
GATCTCGGGA TCTCTAGCAG GTCTAGGAGT TACAGTGATG ATGGATTTCA CCAGTCTTAC 
GGTGAATACA TGCCACATTC TGCTTCTTCC TCGCCATATG GTAATGGGCA AACACAATCG 
CAATGGCAGA TGGCAAATAT GGATTTCTCT TTACCGGCTA TGAGGAACCA AGACGATGTA 
TCAGCATCAG CAACAGCTAC TTACTCTTAC TTTGATTTAG ATTCATCAAA CCCGAATTTG 
TCTGGAATCA ACGGCTATAG GGACTTCAGG CCATCGAACG GACACTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_851125.1
CDS	513..3680
Translation	MSESTNEDSGAGRSSLEENSNGQRSQSEEAIAEWRSSEQVENGTPSTSPPYWDIDDDDDFGSKPSQLFGKNTWTIEKFSDINKRELRGDVFEVGGYKWYILIYPQGCDVCNHLSLFLCVAHHEKLLPGWSHFAQFTIAVSNKDPKKSKHSDTLHRFWKKEHDWGWKKFIELPKLKEGFIDDSGCLTIKAQVQVIRERVDRPFRCLHYKYREELVRVYLGNVEQICWRFVEEKRSKLGRLIEDKAKWKSFCAFWMGLDQNSRRRMSREKMDVILKIVVKHFFVEKEVTSTLVMDSLYSGLKALEGQNKNKESRPRLMDTEESTAPIVSVDKDSFALVDDVLLLLEKAALEPLPKKEEKSSQNRTKDGNAGEEFSREAVERDDRRLTELGRRTVEIFVLAHIFSNKIEVAYQEAIAWKRQEELIREEEEAWLAESEQKGKRGASEKEKKSKKKQAKQKKNKNKGKEMRKEDKVRTQTEEREIEKEECVRAIAESSAEKPDTLGDVSDVSDSVDSSAEILQLDSEDRESSPVHWEMDASEVHPPSAGDTSRGRGNSFSIPNGVAERKGLSTMDDSSSTCSNDSIQSGVANGSYKGNVLNCQSQKWFSNGKIQPGKVSDSNSLASEKEHQPSRLASDPKNQSHSSDIRRVGEADIVISHIQKPESPKERSPVSKDPNMIQMKEKSAAVLSPSRAAPWNPPSPVQAKPEKKGVSNVEAVPNRKVISVKSPSSHHASPSREAQLQTVGPRADIQKIASPKPVEQPAPPMSRPLSAPIIPPTQAAPVISAVQTSTASLARSMSSTGRLGSPTHSQAYNPQSYKHAIVGSSGFTHPSSQSSGTSTLPPYSHPSPISVSNQSGFPINVGSWDVSSGGLLWTGGSSSTRDTTTTISGNHKTNTYNAPVVTTSIRPTNVQIGRTAQSLMTDEFPHLDIINDLLADEHGTMDNSVYRVPQQFNNQYSYHGGADLGISSRSRSYSDDGFHQSYGEYMPHSASSSPYGNGQTQSQWQMANMDFSLPAMRNQDDVSASATATYSYFDLDSSNPNLSGINGYRDFRPSNGH

Target ORF information:

RefSeq Version	NM_180794.5
Organism	Arabidopsis thaliana(thale cress)
Definition	Arabidopsis thaliana TRAF-like superfamily protein (AT5G43560), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_180794.5

ORF Insert Sequence:

ATGTCAGAGA GTACTAATGA AGATAGTGGA GCAGGAAGAT CATCACTGGA AGAGAATTCA 
AATGGACAAA GAAGTCAATC AGAAGAAGCA ATCGCTGAGT GGCGTTCTTC TGAACAAGTT 
GAGAATGGAA CTCCTTCTAC ATCTCCACCG TATTGGGACA TCGATGATGA TGACGATTTT 
GGATCAAAAC CATCTCAACT ATTTGGGAAA AATACTTGGA CGATTGAGAA ATTTTCAGAT 
ATCAACAAAC GAGAGCTCCG CGGCGATGTT TTTGAAGTCG GGGGTTACAA ATGGTATATA 
TTAATTTATC CACAAGGGTG TGATGTTTGC AACCATCTCT CTTTGTTTCT ATGTGTTGCA 
CACCATGAAA AGCTTCTTCC AGGCTGGAGT CATTTTGCTC AGTTTACTAT AGCTGTGTCG 
AATAAAGATC CGAAGAAGTC AAAGCATTCA GATACGTTAC ACCGGTTTTG GAAGAAAGAG 
CATGATTGGG GTTGGAAGAA ATTTATTGAG TTACCTAAAT TGAAGGAAGG GTTTATAGAT 
GATTCTGGTT GTCTTACAAT TAAAGCTCAA GTGCAGGTGA TCAGAGAGAG AGTGGACCGA 
CCTTTTCGCT GCCTTCATTA TAAATATAGG GAGGAACTTG TTAGGGTGTA TTTGGGAAAT 
GTAGAGCAAA TTTGCTGGCG GTTTGTGGAA GAGAAAAGAA GCAAGCTTGG TAGGTTGATA 
GAGGACAAGG CAAAATGGAA AAGCTTCTGT GCTTTCTGGA TGGGGTTGGA CCAAAATTCA 
AGGCGTCGAA TGTCCCGAGA GAAAATGGAT GTGATTCTAA AAATAGTTGT AAAACACTTC 
TTTGTCGAGA AGGAAGTTAC ATCTACTTTG GTGATGGATT CCTTGTATAG TGGATTGAAG 
GCTCTTGAAG GCCAAAATAA GAACAAGGAG AGTAGGCCGA GACTAATGGA TACTGAAGAA 
TCCACAGCTC CAATTGTTAG CGTGGACAAA GATTCGTTTG CATTAGTTGA TGATGTGTTA 
TTACTCTTAG AGAAGGCTGC TCTGGAGCCA TTGCCTAAAA AAGAGGAAAA GAGTTCTCAA 
AACCGTACGA AGGATGGGAA TGCTGGAGAG GAATTCAGTA GAGAAGCCGT TGAGCGTGAT 
GATAGGCGTT TAACTGAATT GGGTAGACGG ACTGTGGAGA TATTTGTTCT TGCACATATC 
TTCAGCAACA AAATTGAAGT TGCATACCAA GAAGCTATTG CATGGAAAAG GCAAGAAGAA 
CTTATTCGTG AAGAAGAGGA AGCGTGGCTG GCAGAAAGCG AACAGAAGGG CAAAAGAGGA 
GCATCTGAAA AAGAGAAGAA ATCTAAGAAG AAACAGGCGA AACAGAAAAA GAACAAAAAC 
AAAGGAAAGG AAATGAGGAA AGAAGACAAG GTGAGAACCC AAACAGAAGA AAGGGAAATT 
GAGAAAGAGG AATGTGTGAG AGCGATAGCA GAATCGTCAG CTGAAAAACC TGACACACTT 
GGAGATGTCT CTGACGTGTC TGATTCAGTA GATAGTTCAG CTGAAATACT TCAGCTTGAT 
TCAGAAGATA GAGAGAGTAG TCCTGTTCAT TGGGAAATGG ATGCCTCAGA GGTTCATCCT 
CCTTCTGCAG GAGACACTAG CAGAGGAAGA GGCAATTCTT TTTCTATACC TAATGGAGTT 
GCAGAAAGAA AGGGTCTGTC CACAATGGAT GATAGTTCTT CAACCTGTTC TAATGACTCG 
ATTCAATCAG GGGTAGCCAA TGGGTCATAC AAAGGGAATG TATTAAATTG CCAAAGCCAA 
AAGTGGTTTA GCAATGGAAA AATACAACCA GGAAAAGTAT CTGATTCCAA CAGTTTAGCC 
AGTGAAAAAG AGCATCAACC TTCAAGACTT GCATCTGACC CTAAAAATCA GAGCCATTCT 
TCTGATATAC GCAGAGTTGG TGAAGCTGAC ATAGTTATCT CCCACATTCA AAAACCAGAG 
AGCCCTAAGG AACGTAGTCC TGTTAGCAAG GATCCCAACA TGATTCAGAT GAAAGAGAAA 
AGTGCTGCGG TACTTTCCCC ATCCAGAGCT GCTCCTTGGA ATCCTCCGTC TCCAGTGCAA 
GCAAAACCGG AGAAAAAGGG TGTTTCAAAT GTAGAGGCGG TTCCAAACAG GAAAGTCATA 
TCTGTTAAAT CACCTTCATC ACATCATGCA TCACCATCTC GTGAAGCTCA GTTGCAAACA 
GTGGGTCCTA GAGCTGATAT ACAGAAAATC GCTTCTCCGA AACCTGTGGA ACAACCAGCA 
CCTCCTATGT CAAGGCCTTT GAGTGCTCCT ATAATCCCTC CAACGCAAGC TGCACCTGTA 
ATATCTGCTG TTCAAACCTC GACTGCGTCC CTTGCTCGTT CAATGAGCTC AACAGGGCGT 
TTAGGTTCAC CGACACATAG CCAAGCTTAC AATCCTCAAT CCTACAAACA TGCCATAGTG 
GGTTCATCTG GTTTCACCCA CCCAAGCTCT CAATCGAGTG GAACAAGCAC ATTGCCGCCT 
TATTCACATC CGTCTCCTAT CTCAGTATCA AATCAGTCTG GTTTCCCTAT CAATGTTGGC 
TCTTGGGATG TTTCTTCTGG TGGGCTATTG TGGACCGGTG GTTCGAGTTC AACCAGAGAT 
ACAACAACAA CCATCAGCGG GAATCACAAA ACAAACACTT ACAACGCACC CGTAGTAACT 
ACCAGCATCA GGCCTACTAA TGTTCAGATA GGGAGAACGG CACAGAGTCT GATGACCGAT 
GAGTTCCCTC ACCTTGATAT CATCAATGAT CTGCTTGCAG ACGAACACGG TACAATGGAT 
AATAGCGTAT ACCGTGTACC ACAACAGTTC AACAACCAGT ACTCATATCA TGGCGGTGCG 
GATCTCGGGA TCTCTAGCAG GTCTAGGAGT TACAGTGATG ATGGATTTCA CCAGTCTTAC 
GGTGAATACA TGCCACATTC TGCTTCTTCC TCGCCATATG GTAATGGGCA AACACAATCG 
CAATGGCAGA TGGCAAATAT GGATTTCTCT TTACCGGCTA TGAGGAACCA AGACGATGTA 
TCAGCATCAG CAACAGCTAC TTACTCTTAC TTTGATTTAG ATTCATCAAA CCCGAATTTG 
TCTGGAATCA ACGGCTATAG GGACTTCAGG CCATCGAACG GACACTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PubMed

Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.
Nature408(6814)823-6(2000 Dec)
Tabata S,Kaneko T,Nakamura Y,Kotani H,Kato T,Asamizu E,Miyajima N,Sasamoto S,Kimura T,Hosouchi T,Kawashima K,Kohara M,Matsumoto M,Matsuno A,Muraki A,Nakayama S,Nakazaki N,Naruo K,Okumura S,Shinpo S,Takeuchi C,Wada T,Watanabe A,Yamada M,Yasuda M,Sato S,de la Bastide M,Huang E,Spiegel L,Gnoj L,O'Shaughnessy A,Preston R,Habermann K,Murray J,Johnson D,Rohlfing T,Nelson J,Stoneking T,Pepin K,Spieth J,Sekhon M,Armstrong J,Becker M,Belter E,Cordum H,Cordes M,Courtney L,Courtney W,Dante M,Du H,Edwards J,Fryman J,Haakensen B,Lamar E,Latreille P,Leonard S,Meyer R,Mulvaney E,Ozersky P,Riley A,Strowmatt C,Wagner-McPherson C,Wollam A,Yoakum M,Bell M,Dedhia N,Parnell L,Shah R,Rodriguez M,See LH,Vil D,Baker J,Kirchoff K,Toth K,King L,Bahret A,Miller B,Marra M,Martienssen R,McCombie WR,Wilson RK,Murphy G,Bancroft I,Volckaert G,Wambutt R,D?sterh?ft A,Stiekema W,Pohl T,Entian KD,Terryn N,Hartley N,Bent E,Johnson S,Langham SA,McCullagh B,Robben J,Grymonprez B,Zimmermann W,Ramsperger U,Wedler H,Balke K,Wedler E,Peters S,van Staveren M,Dirkse W,Mooijman P,Lankhorst RK,Weitzenegger T,Bothe G,Rose M,Hauf J,Berneiser S,Hempel S,Feldpausch M,Lamberth S,Villarroel R,Gielen J,Ardiles W,Bents O,Lemcke K,Kolesov G,Mayer K,Rudd S,Schoof H,Schueller C,Zaccaria P,Mewes HW,Bevan M,Fransz P,,,

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AT5G43560 cDNA ORF clone, Arabidopsis thaliana(thale cress)

Gene

Clones

gRNAs

Related articles in PubMed

Target ORF information:

Target ORF information:

ORF Insert Sequence:

Target ORF information:

Target ORF information:

ORF Insert Sequence:

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