| Gene Symbol | LCB1 |
| Entrez Gene ID | 829800 |
| Full Name | long-chain base1 |
| Synonyms | AP22.60,AP22_60,ATLCB1,EMB2779,EMBRYO DEFECTIVE 2779,FBR11,FUMONISIN B1 RESISTANT 11,long-chain base1 |
| Gene Type | protein-coding |
| Organism | Arabidopsis thaliana(thale cress) |
ORF » Species Summary » Arabidopsis thaliana » LCB1 cDNA ORF clone
| Gene Symbol | LCB1 |
| Entrez Gene ID | 829800 |
| Full Name | long-chain base1 |
| Synonyms | AP22.60,AP22_60,ATLCB1,EMB2779,EMBRYO DEFECTIVE 2779,FBR11,FUMONISIN B1 RESISTANT 11,long-chain base1 |
| Gene Type | protein-coding |
| Organism | Arabidopsis thaliana(thale cress) |
| mRNA | Protein | Name |
|---|---|---|
| NM_119811.3 | NP_568005.1 | long-chain base1 |
| NM_001036719.2 | NP_001031796.1 | long-chain base1 |
| NM_001342410.1 | NP_001329288.1 | long-chain base1 |
| Mus musculus (house mouse) | Sptlc1 | NP_033295.2 |
| Caenorhabditis elegans (roundworm) | sptl-1 | NP_001021978.1 |
| Oryza sativa (rice) | Os10g0189600 | NP_001064272.1 |
| Homo sapiens (human) | SPTLC1 | NP_006406.1 |
| Pan troglodytes (chimpanzee) | SPTLC1 | XP_520127.4 |
| Danio rerio (zebrafish) | sptlc1 | NP_001018307.1 |
| Kluyveromyces lactis | KLLA0A09955g | XP_451435.1 |
| Magnaporthe oryzae (rice blast fungus) | MGG_00864 | XP_003718108.1 |
| Arabidopsis thaliana (thale cress) | LCB1 | NP_001031796.1 |
| Oryza sativa (rice) | Os03g0252800 | NP_001049576.1 |
| Oryza sativa (rice) | Os02g0806900 | NP_001048451.2 |
| Bos taurus (cattle) | SPTLC1 | NP_001029921.1 |
| Rattus norvegicus (Norway rat) | Sptlc1 | NP_001101876.1 |
| Gallus gallus (chicken) | SPTLC1 | XP_004949309.1 |
| Drosophila melanogaster (fruit fly) | Spt-I | NP_610842.1 |
| Schizosaccharomyces pombe (fission yeast) | SPBC18E5.02c | NP_595848.1 |
| Neurospora crassa | NCU06870 | XP_957979.1 |
| Canis lupus familiaris (dog) | SPTLC1 | XP_541308.2 |
| Saccharomyces cerevisiae (baker's yeast) | LCB1 | NP_014025.1 |
| Anopheles gambiae (African malaria mosquito) | AgaP_AGAP010427 | XP_311520.4 |
| Eremothecium gossypii | AGOS_ABR145C | NP_983092.2 |
| Xenopus tropicalis (tropical clawed frog) | sptlc1 | NP_001073042.1 |
Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.
Mayer K, Sch?ller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D?sterh?ft A, Stiekema W, Entian KD, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M?ller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham SA, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang YJ, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K?tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream MA, Lyne M, Benes V, Rechmann S, Borkova D, Bl?cker H, Scharfe M, Grimm M, L?hnert TH, Dose S, de Haan M, Maarse A, Sch?fer M, M?ller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M?ndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes HW, Stocker S, Zaccaria P, Bevan M, Wilson RK, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby IK, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie WR
Nature402(6763)769-77(1999 Dec)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
expression confined in microspores during microgametogenesis, suggesting that serine palmitoyltransferase-modulated programmed cell death plays an important role in the regulation of male gametophyte development
Title: Serine palmitoyltransferase, a key enzyme for de novo synthesis of sphingolipids, is essential for male gametophyte development in Arabidopsis.
The predicted gene for Arabidopsis thaliana LCB1 encodes a genuine subunit of Serine palmitoyltransferase (SPT) that rescues the sphingolipid long-chain base auxotrophy of Saccharomyces cerevisiae SPT mutants when coexpressed with Arabidopsis LCB2.
Title: The essential nature of sphingolipids in plants as revealed by the functional identification and characterization of the Arabidopsis LCB1 subunit of serine palmitoyltransferase.
The following LCB1 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the LCB1 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
| CloneID | OAb32059 | |
| Clone ID Related Accession (Same CDS sequence) | NM_119811.3 , NM_001036719.2 | |
| Accession Version | NM_119811.3 Latest version! | Documents for ORF clone product in default vector |
| Sequence Information | ORF Nucleotide Sequence (Length: 1449bp) Protein sequence SNP |
|
| Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
| Clone information | Clone Map | MSDS |
| Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
| ORF Insert Method | CloneEZ™ Seamless cloning technology | |
| Insert Structure | linear | |
| Update Date | 2019-02-13 | |
| Organism | Arabidopsis thaliana(thale cress) | |
| Product | long-chain base1 | |
| Comment | Comment: REVIEWED REFSEQ: This record has been curated by TAIR and Araport. This record is derived from an annotated genomic sequence (NC_003075). On Sep 12, 2016 this sequence version replaced NM_119811.2. | |
1 | ATGGCTTCGA ATCTCGTGGA AATGTTTAAT GCTGCTTTGA ATTGGGTTAC TATGATTCTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| RefSeq | NP_568005.1 |
| CDS | 480..1928 |
| Translation |
Target ORF information:
Target ORF information:
|
NM_119811.3 |
1 | ATGGCTTCGA ATCTCGTGGA AATGTTTAAT GCTGCTTTGA ATTGGGTTAC TATGATTCTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| CloneID | OAb32059 | |
| Clone ID Related Accession (Same CDS sequence) | NM_119811.3 , NM_001036719.2 | |
| Accession Version | NM_001036719.2 Latest version! | Documents for ORF clone product in default vector |
| Sequence Information | ORF Nucleotide Sequence (Length: 1449bp) Protein sequence SNP |
|
| Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
| Clone information | Clone Map | MSDS |
| Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
| ORF Insert Method | CloneEZ™ Seamless cloning technology | |
| Insert Structure | linear | |
| Update Date | 2019-02-13 | |
| Organism | Arabidopsis thaliana(thale cress) | |
| Product | long-chain base1 | |
| Comment | Comment: REVIEWED REFSEQ: This record has been curated by TAIR and Araport. This record is derived from an annotated genomic sequence (NC_003075). On Sep 12, 2016 this sequence version replaced NM_001036719.1. | |
1 | ATGGCTTCGA ATCTCGTGGA AATGTTTAAT GCTGCTTTGA ATTGGGTTAC TATGATTCTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| RefSeq | NP_001031796.1 |
| CDS | 210..1658 |
| Translation |
Target ORF information:
Target ORF information:
|
NM_001036719.2 |
1 | ATGGCTTCGA ATCTCGTGGA AATGTTTAAT GCTGCTTTGA ATTGGGTTAC TATGATTCTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| CloneID | OAb40093 | |
| Clone ID Related Accession (Same CDS sequence) | NM_001342410.1 | |
| Accession Version | NM_001342410.1 Latest version! | Documents for ORF clone product in default vector |
| Sequence Information | ORF Nucleotide Sequence (Length: 1029bp) Protein sequence SNP |
|
| Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
| Clone information | Clone Map | MSDS |
| Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
| ORF Insert Method | CloneEZ™ Seamless cloning technology | |
| Insert Structure | linear | |
| Update Date | 2019-02-13 | |
| Organism | Arabidopsis thaliana(thale cress) | |
| Product | long-chain base1 | |
| Comment | Comment: REVIEWED REFSEQ: This record has been curated by TAIR and Araport. This record is derived from an annotated genomic sequence (NC_003075). | |
1 | ATGGCTTCGA ATCTCGTGGA AATGTTTAAT GCTGCTTTGA ATTGGGTTAC TATGATTCTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| RefSeq | NP_001329288.1 |
| CDS | 480..1508 |
| Translation |
Target ORF information:
Target ORF information:
|
NM_001342410.1 |
1 | ATGGCTTCGA ATCTCGTGGA AATGTTTAAT GCTGCTTTGA ATTGGGTTAC TATGATTCTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. |