Gene Symbol | DCL3 |
Entrez Gene ID | 823508 |
Full Name | dicer-like 3 |
Synonyms | ATDCL3,DICER-LIKE 3,dicer-like 3 |
Gene Type | protein-coding |
Organism | Arabidopsis thaliana(thale cress) |
ORF » Species Summary » Arabidopsis thaliana » DCL3 cDNA ORF clone
Gene Symbol | DCL3 |
Entrez Gene ID | 823508 |
Full Name | dicer-like 3 |
Synonyms | ATDCL3,DICER-LIKE 3,dicer-like 3 |
Gene Type | protein-coding |
Organism | Arabidopsis thaliana(thale cress) |
mRNA | Protein | Name |
---|---|---|
NM_001339116.1 | NP_001325813.1 | dicer-like 3 |
NM_001161191.3 | NP_001154663.2 | dicer-like 3 |
NM_001339114.1 | NP_001325812.1 | dicer-like 3 |
NM_114260.1 | NP_189978.1 | dicer-like 3 |
NM_001161190.2 | NP_001154662.2 | dicer-like 3 |
NM_001339115.1 | NP_001325811.1 | dicer-like 3 |
Oryza sativa (rice) | Os01g0909200 | NP_001045148.1 |
Arabidopsis thaliana (thale cress) | DCL3 | NP_001154662.2 |
Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.
Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl?cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell LA, Mache R, Puigdom?nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu?tier F, Sch?fer M, M?ller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L?hnert TH, Nordsiek G, Reichelt J, Scharfe M, Sch?n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw?lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse AC, Alcaraz JP, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes HW, Mayer KF, Kaul S, Town CD, Koo HL, Tallon LJ, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii CY, Shea TP, Creasy TH, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill JE, Feldblyum TV, Preuss D, Lin X, Nierman WC, Salzberg SL, White O, Venter JC, Fraser CM, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,
Nature408(6814)820-2(2000 Dec)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
Data demonstrate that different nutrient statuses of a host plant affect the post-translational regulation of the dicing activity of DCL3 and DCL4. Phosphate deficiency inhibited DCL3, and the activity of DCL3 was directly activated by inorganic phosphate.
Title: Post-Translational Regulation of the Dicing Activities of Arabidopsis DICER-LIKE 3 and 4 by Inorganic Phosphate and the Redox State.
This expression-dependent RdDM mechanism functions through RNAi degradation of transposable element mRNAs into small RNAs guided by the RNA-dependent RNA polymerase 6 (RDR6) protein and is therefore referred to as RDR6-RdDM.We identified a new mechanism of expression-dependent RdDM, which functions through DICER-LIKE3 (DCL3) but bypasses the requirement of both RNA polymerase IV and RDR6 (termed DCL3-RdDM).
Title: Full-length autonomous transposable elements are preferentially targeted by expression-dependent forms of RNA-directed DNA methylation.
The authors identified Pol IV and RDR2-dependent RNAs (P4R2 RNAs) that accumulate in dcl3 mutants and are diced into 24 nt RNAs by DCL3 in vitro.
Title: Identification of Pol IV and RDR2-dependent precursors of 24 nt siRNAs guiding de novo DNA methylation in Arabidopsis.
CMA33/XCT modulates small RNA production through regulating the transcription of Dicer-Like Genes.
Title: CMA33/XCT Regulates Small RNA Production through Modulating the Transcription of Dicer-Like Genes in Arabidopsis.
DCL3 preferentially cleaves short dsRNAs with 5' phosphorylated adenosine or uridine and a 1 nt 3' overhang.
Title: Distinct substrate specificities of Arabidopsis DCL3 and DCL4.
The following DCL3 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the DCL3 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | OAb37991 | |
Clone ID Related Accession (Same CDS sequence) | NM_001339116.1 | |
Accession Version | NM_001339116.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 4059bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-02-13 | |
Organism | Arabidopsis thaliana(thale cress) | |
Product | dicer-like 3 | |
Comment | Comment: REVIEWED REFSEQ: This record has been curated by TAIR and Araport. This record is derived from an annotated genomic sequence (NC_003074). COMPLETENESS: incomplete on the 3' end. |
1 | ATGGACTCAA AGATTTTTAA TCCTGAAGAG CGTGAAGGAG TGGAAAAGTT TGCTACAACG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001325813.1 |
CDS | 186..4244 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001339116.1 |
1 | ATGGACTCAA AGATTTTTAA TCCTGAAGAG CGTGAAGGAG TGGAAAAGTT TGCTACAACG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OAb37989 | |
Clone ID Related Accession (Same CDS sequence) | NM_001339115.1 | |
Accession Version | NM_001339115.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 4518bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-02-13 | |
Organism | Arabidopsis thaliana(thale cress) | |
Product | dicer-like 3 | |
Comment | Comment: REVIEWED REFSEQ: This record has been curated by TAIR and Araport. This record is derived from an annotated genomic sequence (NC_003074). COMPLETENESS: incomplete on the 3' end. |
1 | ATGCATTCGT CGTTGGAGCC GGAGAAAATG GAGGAAGGTG GGGGAAGCAA TTCGCTTAAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001325811.1 |
CDS | 162..4679 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001339115.1 |
1 | ATGCATTCGT CGTTGGAGCC GGAGAAAATG GAGGAAGGTG GGGGAAGCAA TTCGCTTAAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OAb37990 | |
Clone ID Related Accession (Same CDS sequence) | NM_001339114.1 | |
Accession Version | NM_001339114.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 4710bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-02-13 | |
Organism | Arabidopsis thaliana(thale cress) | |
Product | dicer-like 3 | |
Comment | Comment: REVIEWED REFSEQ: This record has been curated by TAIR and Araport. This record is derived from an annotated genomic sequence (NC_003074). COMPLETENESS: incomplete on the 3' end. |
1 | ATGCATTCGT CGTTGGAGCC GGAGAAAATG GAGGAAGGTG GGGGAAGCAA TTCGCTTAAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001325812.1 |
CDS | 162..4871 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001339114.1 |
1 | ATGCATTCGT CGTTGGAGCC GGAGAAAATG GAGGAAGGTG GGGGAAGCAA TTCGCTTAAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OAb12769 | |
Clone ID Related Accession (Same CDS sequence) | NM_114260.1 | |
Accession Version | NM_114260.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 4596bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-02-13 | |
Organism | Arabidopsis thaliana(thale cress) | |
Product | dicer-like 3 | |
Comment | Comment: REVIEWED REFSEQ: This record has been curated by TAIR and Araport. This record is derived from an annotated genomic sequence (NC_003074). COMPLETENESS: incomplete on both ends. |
1 | ATGCATTCGT CGTTGGAGCC GGAGAAAATG GAGGAAGGTG GGGGAAGCAA TTCGCTTAAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_189978.1 |
CDS | 1..4596 |
Translation |
Target ORF information:
Target ORF information:
|
NM_114260.1 |
1 | ATGCATTCGT CGTTGGAGCC GGAGAAAATG GAGGAAGGTG GGGGAAGCAA TTCGCTTAAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OAb29531 | |
Clone ID Related Accession (Same CDS sequence) | NM_001161191.3 | |
Accession Version | NM_001161191.3 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 4713bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-02-13 | |
Organism | Arabidopsis thaliana(thale cress) | |
Product | dicer-like 3 | |
Comment | Comment: REVIEWED REFSEQ: This record has been curated by TAIR and Araport. This record is derived from an annotated genomic sequence (NC_003074). On Sep 12, 2016 this sequence version replaced NM_001161191.2. |
1 | ATGCATTCGT CGTTGGAGCC GGAGAAAATG GAGGAAGGTG GGGGAAGCAA TTCGCTTAAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001154663.2 |
CDS | 149..4861 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001161191.3 |
1 | ATGCATTCGT CGTTGGAGCC GGAGAAAATG GAGGAAGGTG GGGGAAGCAA TTCGCTTAAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OAb29532 | |
Clone ID Related Accession (Same CDS sequence) | NM_001161190.2 | |
Accession Version | NM_001161190.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 4743bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-02-13 | |
Organism | Arabidopsis thaliana(thale cress) | |
Product | dicer-like 3 | |
Comment | Comment: REVIEWED REFSEQ: This record has been curated by TAIR and Araport. This record is derived from an annotated genomic sequence (NC_003074). On May 26, 2011 this sequence version replaced NM_001161190.1. COMPLETENESS: incomplete on both ends. |
1 | ATGCATTCGT CGTTGGAGCC GGAGAAAATG GAGGAAGGTG GGGGAAGCAA TTCGCTTAAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001154662.2 |
CDS | 1..4743 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001161190.2 |
1 | ATGCATTCGT CGTTGGAGCC GGAGAAAATG GAGGAAGGTG GGGGAAGCAA TTCGCTTAAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. |