Gene Symbol | VCS |
Entrez Gene ID | 820530 |
Full Name | Transducin/WD40 repeat-like superfamily protein |
Synonyms | VARICOSE |
Gene Type | protein-coding |
Organism | Arabidopsis thaliana(thale cress) |
ORF » Species Summary » Arabidopsis thaliana » VCS cDNA ORF clone
Gene Symbol | VCS |
Entrez Gene ID | 820530 |
Full Name | Transducin/WD40 repeat-like superfamily protein |
Synonyms | VARICOSE |
Gene Type | protein-coding |
Organism | Arabidopsis thaliana(thale cress) |
mRNA | Protein | Name |
---|---|---|
NM_180245.2 | NP_850576.1 | Transducin/WD40 repeat-like superfamily protein |
NM_112175.3 | NP_187938.2 | Transducin/WD40 repeat-like superfamily protein |
NM_001338042.1 | NP_001327264.1 | Transducin/WD40 repeat-like superfamily protein |
Arabidopsis thaliana (thale cress) | VCS | NP_850576.1 |
Oryza sativa (rice) | Os02g0722800 | NP_001047969.1 |
Oryza sativa (rice) | Os06g0300800 | NP_001057453.2 |
Arabidopsis thaliana (thale cress) | VCR | NP_187937.2 |
Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.
Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl?cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell LA, Mache R, Puigdom?nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu?tier F, Sch?fer M, M?ller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L?hnert TH, Nordsiek G, Reichelt J, Scharfe M, Sch?n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw?lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse AC, Alcaraz JP, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes HW, Mayer KF, Kaul S, Town CD, Koo HL, Tallon LJ, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii CY, Shea TP, Creasy TH, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill JE, Feldblyum TV, Preuss D, Lin X, Nierman WC, Salzberg SL, White O, Venter JC, Fraser CM, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,
Nature408(6814)820-2(2000 Dec)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
Data suggest that specific motifs, secondary energy, and GC content of transcripts could play a role in their degradation by exoribonuclease4 (xrn4) and varicose (vcs).
Title: 5' to 3' mRNA Decay Contributes to the Regulation of Arabidopsis Seed Germination by Dormancy.
Seedling lethal phenotypes in dcp1, dcp2 and vcs mutants are caused the disruption of miRNA-mediated gene regulation.
Title: The role of decapping proteins in the miRNA accumulation in Arabidopsis thaliana.
DCP2 interacts in vitro and in vivo with DCP1 and VARICOSE (VCS), an Arabidopsis homolog of human Hedls/Ge-1, suggesting that the three proteins operate as a decapping complex.
Title: Arabidopsis DCP2, DCP1, and VARICOSE form a decapping complex required for postembryonic development.
The following VCS gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the VCS cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | OAb37380 | |
Clone ID Related Accession (Same CDS sequence) | NM_001338042.1 | |
Accession Version | NM_001338042.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 3705bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-02-13 | |
Organism | Arabidopsis thaliana(thale cress) | |
Product | Transducin/WD40 repeat-like superfamily protein | |
Comment | Comment: REVIEWED REFSEQ: This record has been curated by TAIR and Araport. This record is derived from an annotated genomic sequence (NC_003074). |
1 | ATGGCGTCTT CTCCTGGTAA TACTAACCCT CACAATACTC CTCCGTTTGA TCTCGGTATT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001327264.1 |
CDS | 264..3968 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001338042.1 |
1 | ATGGCGTCTT CTCCTGGTAA TACTAACCCT CACAATACTC CTCCGTTTGA TCTCGGTATT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OAb11005 | |
Clone ID Related Accession (Same CDS sequence) | NM_180245.2 | |
Accession Version | NM_180245.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 3930bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-02-13 | |
Organism | Arabidopsis thaliana(thale cress) | |
Product | Transducin/WD40 repeat-like superfamily protein | |
Comment | Comment: REVIEWED REFSEQ: This record has been curated by TAIR and Araport. This record is derived from an annotated genomic sequence (NC_003074). On Sep 12, 2016 this sequence version replaced NM_180245.1. |
1 | ATGGCGTCTT CTCCTGGTCC TTTTCTTCAC AACCAGTACG ATCAGCAGCA CTACGCTCCG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_850576.1 |
CDS | 261..4190 |
Translation |
Target ORF information:
Target ORF information:
|
NM_180245.2 |
1 | ATGGCGTCTT CTCCTGGTCC TTTTCTTCAC AACCAGTACG ATCAGCAGCA CTACGCTCCG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OAb11004 | |
Clone ID Related Accession (Same CDS sequence) | NM_112175.3 | |
Accession Version | NM_112175.3 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 4035bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-02-13 | |
Organism | Arabidopsis thaliana(thale cress) | |
Product | Transducin/WD40 repeat-like superfamily protein | |
Comment | Comment: REVIEWED REFSEQ: This record has been curated by TAIR and Araport. This record is derived from an annotated genomic sequence (NC_003074). On Sep 12, 2016 this sequence version replaced NM_112175.2. |
1 | ATGGCGTCTT CTCCTGGTAA TACTAACCCT CACAATACTC CTCCGTTTGA TCTCGGTATT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_187938.2 |
CDS | 261..4295 |
Translation |
Target ORF information:
Target ORF information:
|
NM_112175.3 |
1 | ATGGCGTCTT CTCCTGGTAA TACTAACCCT CACAATACTC CTCCGTTTGA TCTCGGTATT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. |