ORF » Species Summary » Xenopus tropicalis » trim45 cDNA ORF clone

trim45 cDNA ORF clone, Xenopus tropicalis(tropical clawed frog)

The following trim45 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the trim45 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID Accession No. Definition **Vector *Turnaround time Price (USD) Select
OXa23439 NM_001011026.1
Latest version!		 Xenopus tropicalis tripartite motif containing 45 (trim45), mRNA. pcDNA3.1-C-(k)DYK or customized vector 7-9 $342.30
$489.00
OXa27027 XM_012955239.2
Latest version!		 Xenopus tropicalis tripartite motif containing 45 (trim45), transcript variant X1, mRNA. pcDNA3.1-C-(k)DYK or customized vector 10-12 $342.30
$489.00
OXa27027 XM_031895907.1
Latest version!		 Xenopus tropicalis tripartite motif containing 45 (trim45), transcript variant X1, mRNA. pcDNA3.1-C-(k)DYK or customized vector 14-16 $307.30
$439.00

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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

  • Reference Sequences (Refseq)
    trim45 ( NM_001011026.1 ) cDNA ORF clone, Xenopus tropicalis(tropical clawed frog) -> NP_001011026.1 Xenopus tropicalis tripartite motif containing 45 (trim45), mRNA.
    Price & Availability↑
    CloneID OXa23439
    Clone ID Related Accession (Same CDS sequence) NM_001011026.1
    Accession Version NM_001011026.1 Latest version! Documents for ORF clone product in default vector
    Sequence Information ORF Nucleotide Sequence (Length: 1644bp)
    Protein sequence
    SNP
    Vector pcDNA3.1-C-(k)DYK or customized vector User Manual
    Clone information Clone Map MSDS
    Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags
    ORF Insert Method CloneEZ™ Seamless cloning technology
    Insert Structure linear
    Update Date 2019-12-21
    Organism Xenopus tropicalis(tropical clawed frog)
    Product tripartite motif-containing protein 45
    Comment Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC082821.1. ##Evidence-Data-START## Transcript exon combination :: BC082821.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00861989, SAMN00861990 [ECO:0000348] ##Evidence-Data-END## 

    1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    ATGGCAGAGA ATGGCAGCAG GAAGGAAGCC CAGGGTCGGA CTCAGTGCCC CCAGTGCCAG 
    CAGCCTTTCT GCCAGCCCCG GATCCTGCCC TGCCTGCACA CTCTGTGTGG GGGGTGCCTG 
    GCCAAGCTGG AGCCCTTCAG TGCCCTGGGC AAGGGGCACA GCGCTGGCAC CCACTGGAGC 
    GTATTGTGCC CGGTGTGTGA CTCTGAAGTG GCGCTGCCAG CTGGAGGGGT AGAAGAGCTG 
    TTACCGGATT GGTTGGCAGA GGCTGAGGTG CTGCTTGCCC AAGTGCAGAG CGGGGGGCTG 
    GCGCTGCCAT GTGACCTGTG CAGGGAGGGG CAAGCAGAGA AGCGCTGCCA GGAGTGCAAG 
    GTGAACGTGT GTGAGTTCTG CTGCCAAGCG CACAGGCGGC AGAAGAGGAC GGCGGCGCAC 
    CCCCTGCACC CCCTGCAGGA CCTGTCCCTG GGGACCATCC TCCCACCTGC CCCCTGCTGC 
    ACGTTGCACC CCCTGGAGGC ACTTGGGTTG TTCTGTGAGC CCTGCACCGT GCCCTGCTGC 
    CGGGACTGTG CCATCGGCCA TCACAGGGGC CACGATCTCC GGCCGGCGGC TGAATGTGCC 
    GGGGGGCACC GGGAGTCTCT GCTCAGGGCC CTACAGGAGG CTGAACCCCA TATAGAGCAG 
    CTGGAGGCTG CCCTCGGGGG GGTACAGGAG GCGGGGAAGG CTCTGGGGCA GAGAGCTTTG 
    GGGCTGAGGG CAGAGGTTGA GGCCTTCATT GAGGGGTATG TGAGGGCTGT ACTGGAGCAC 
    AAAGCTGCCC TGCTGAGGGA CATTGAGGAG GAGACACAGC GGAGGCAGCA GGTTCTGGCC 
    CTGCGAAAGG CCCAGTTACA GCAGCAGCTT TTGGACCTAC GCACTGCCTC AGGCTTCACT 
    AGAGACCTGG TGGCCCGGGG CCCAGACCTC CATCTGCTCC AAGCCCAGGG CTTGGCACTC 
    ACCCGCCTAA AGGAACTGAA CCAGGGGGCA CCCAGGGCGG CAGATCAGAA CAACCCTGCG 
    GGCATCCAGT TTAGTCCCTG GGAGGAGGCC GGACTGTGCC AAGGGTACCA AATGCAGGGG 
    GTGCTGCAAG TAAAGGCAGC GGATCCTGGC AAATGTGAGG CCCGGGGGGC AGGTCTCCAG 
    TCCGTGTGCC AGGGGCAACC CGCCAGCTTC ACCTTCTTCT GTAGAACTGC AAGTGGGGAC 
    CCCGTGCTGG GGGGGCAGCC GCCAAGCGTC ACCATTGTAC ACAAGGACAC AGACAGATCT 
    CTCCATCCAT CCATCCAAGA CAATCAAGAT GGCACCTTCC ACATCTCCTA TTTGGCCCCG 
    GAGCCCGGGG AGCTCTCCAT CAGCGTCAGC CTGAGGGGCC AACACACCCC GGGCTCTCCA 
    TTCAGTGTGA AGGTGAGGGG CAAATCTCAG CGACACCCAG GCATCTACCA CTGCTGTACA 
    TTCTGCTCCA GCGGGGGCCA GAAGGAGGCT CGGTGTGGAT GTGGTGGCAC CATGCCAGGT 
    GGATATCAGG GCTGCGGCCA TGGTCACAAG GGCCACCCTG GCCAATCCCA CTGGTCATGT 
    TGTGGAGCCA CCAAGGAGAA ATCAGAGTGT TTAGGAGTCA GTTCCTCTGC CCCCCGAAAC 
    CTGTTGCGCA CTGTGGCTCT GTGA

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

    RefSeq NP_001011026.1
    CDS139..1782
    Translation

    Target ORF information:

    RefSeq Version NM_001011026.1
    Organism Xenopus tropicalis(tropical clawed frog)
    Definition Xenopus tropicalis tripartite motif containing 45 (trim45), mRNA.

    Target ORF information:

    Epitope DYKDDDDK
    Bacterial selection AMPR
    Mammalian selection NeoR
    Vector pcDNA3.1+/C-(K)DYK
    		 NM_001011026.1

    ORF Insert Sequence:

    1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    ATGGCAGAGA ATGGCAGCAG GAAGGAAGCC CAGGGTCGGA CTCAGTGCCC CCAGTGCCAG 
    CAGCCTTTCT GCCAGCCCCG GATCCTGCCC TGCCTGCACA CTCTGTGTGG GGGGTGCCTG 
    GCCAAGCTGG AGCCCTTCAG TGCCCTGGGC AAGGGGCACA GCGCTGGCAC CCACTGGAGC 
    GTATTGTGCC CGGTGTGTGA CTCTGAAGTG GCGCTGCCAG CTGGAGGGGT AGAAGAGCTG 
    TTACCGGATT GGTTGGCAGA GGCTGAGGTG CTGCTTGCCC AAGTGCAGAG CGGGGGGCTG 
    GCGCTGCCAT GTGACCTGTG CAGGGAGGGG CAAGCAGAGA AGCGCTGCCA GGAGTGCAAG 
    GTGAACGTGT GTGAGTTCTG CTGCCAAGCG CACAGGCGGC AGAAGAGGAC GGCGGCGCAC 
    CCCCTGCACC CCCTGCAGGA CCTGTCCCTG GGGACCATCC TCCCACCTGC CCCCTGCTGC 
    ACGTTGCACC CCCTGGAGGC ACTTGGGTTG TTCTGTGAGC CCTGCACCGT GCCCTGCTGC 
    CGGGACTGTG CCATCGGCCA TCACAGGGGC CACGATCTCC GGCCGGCGGC TGAATGTGCC 
    GGGGGGCACC GGGAGTCTCT GCTCAGGGCC CTACAGGAGG CTGAACCCCA TATAGAGCAG 
    CTGGAGGCTG CCCTCGGGGG GGTACAGGAG GCGGGGAAGG CTCTGGGGCA GAGAGCTTTG 
    GGGCTGAGGG CAGAGGTTGA GGCCTTCATT GAGGGGTATG TGAGGGCTGT ACTGGAGCAC 
    AAAGCTGCCC TGCTGAGGGA CATTGAGGAG GAGACACAGC GGAGGCAGCA GGTTCTGGCC 
    CTGCGAAAGG CCCAGTTACA GCAGCAGCTT TTGGACCTAC GCACTGCCTC AGGCTTCACT 
    AGAGACCTGG TGGCCCGGGG CCCAGACCTC CATCTGCTCC AAGCCCAGGG CTTGGCACTC 
    ACCCGCCTAA AGGAACTGAA CCAGGGGGCA CCCAGGGCGG CAGATCAGAA CAACCCTGCG 
    GGCATCCAGT TTAGTCCCTG GGAGGAGGCC GGACTGTGCC AAGGGTACCA AATGCAGGGG 
    GTGCTGCAAG TAAAGGCAGC GGATCCTGGC AAATGTGAGG CCCGGGGGGC AGGTCTCCAG 
    TCCGTGTGCC AGGGGCAACC CGCCAGCTTC ACCTTCTTCT GTAGAACTGC AAGTGGGGAC 
    CCCGTGCTGG GGGGGCAGCC GCCAAGCGTC ACCATTGTAC ACAAGGACAC AGACAGATCT 
    CTCCATCCAT CCATCCAAGA CAATCAAGAT GGCACCTTCC ACATCTCCTA TTTGGCCCCG 
    GAGCCCGGGG AGCTCTCCAT CAGCGTCAGC CTGAGGGGCC AACACACCCC GGGCTCTCCA 
    TTCAGTGTGA AGGTGAGGGG CAAATCTCAG CGACACCCAG GCATCTACCA CTGCTGTACA 
    TTCTGCTCCA GCGGGGGCCA GAAGGAGGCT CGGTGTGGAT GTGGTGGCAC CATGCCAGGT 
    GGATATCAGG GCTGCGGCCA TGGTCACAAG GGCCACCCTG GCCAATCCCA CTGGTCATGT 
    TGTGGAGCCA CCAAGGAGAA ATCAGAGTGT TTAGGAGTCA GTTCCTCTGC CCCCCGAAAC 
    CTGTTGCGCA CTGTGGCTCT GTGA

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

    trim45 ( XM_012955239.2 ) cDNA ORF clone, Xenopus tropicalis(tropical clawed frog) -> XP_012810693.1 Xenopus tropicalis tripartite motif containing 45 (trim45), transcript variant X1, mRNA.
    Price & Availability↑
    CloneID OXa27027
    Clone ID Related Accession (Same CDS sequence) XM_012955239.2 , XM_031895907.1
    Accession Version XM_012955239.2 Latest version! Documents for ORF clone product in default vector
    Sequence Information ORF Nucleotide Sequence (Length: 1644bp)
    Protein sequence
    SNP
    Vector pcDNA3.1-C-(k)DYK or customized vector User Manual
    Clone information Clone Map MSDS
    Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags
    ORF Insert Method CloneEZ™ Seamless cloning technology
    Insert Structure linear
    Update Date 2016-09-07
    Organism Xenopus tropicalis(tropical clawed frog)
    Product tripartite motif-containing protein 45 isoform X1
    Comment Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_016684809.1) and transcript sequence (BC082821.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Sep 8, 2016 this sequence version replaced XM_012955239.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Xenopus tropicalis Annotation Release 103 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## assembly gap :: added 4 transcript bases to patch genome assembly gap ##RefSeq-Attributes-END## 

    1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    ATGGCAGAGA ATGGCAGCAG GAAGGAAGCC CAGGGTCGGA CTCAGTGCCC CCAGTGCCAG 
    CAGCCTTTCT GCCAGCCCCG GATCCTGCCC TGCCTGCACA CTCTGTGTGG GGGGTGCCTG 
    GCCAAGCTGG AGCCCTTCAG TGCCCTGGGC AAGGGGCACA GCGCTGGCAC CCACTGGAGC 
    GTATTGTGCC CGGTGTGTGA CTCTGAAGTG GCGCTGCCAG CTGGAGGGGT AGAAGAGCTG 
    TTACCGGATT GGTTGGCAGA GGCTGAGGTG CTGCTTGCCC AAGTGCAGAG CGGGGGGCTG 
    GCGCTGCCAT GTGACCTGTG CAGGGAGGGG CAAGCAGAGA AGCGCTGCCA GGAGTGCAAG 
    GTGAACGTGT GTGAGTTCTG CTGCCAAGCG CACAGGCGGC AGAAGAGGAC GGCGGCGCAC 
    CCCCTGCACC CCCTGCAGGA CCTGTCCCTG GGGACCATCC TCCCACCTGC CCCCTGCTGC 
    ACGTTGCACC CCCTGGAGGC ACTTGGGTTG TTCTGTGAGC CCTGCACCGT GCCCTGCTGC 
    CGGGACTGTG CCATCGGCCA TCACAGGGGC CACGATCTCC GGCCGGCGGC TGAATGTGCC 
    GGGGGGCACC GGGAGTCTCT GCTCAGGGCC CTACAGGAGG CTGAACCCCA TATAGAGCAG 
    CTGGAGGCTG CCCTCGGGGG GGTACAGGAG GCGGGGAAGG CTCTGGGGCA GAGAGCTTTG 
    GGGCTGAGGG CAGAGGTTGA GGCCTTCATT GAGGGGTATG TGAGGGCTGT ACTGGAGCAC 
    AAAGCTGCCC TGCTGAGGGA CATTGAGGAG GAGACACAGC GGAGGCAGCA GGTTCTGGCC 
    CTGCGAAAGG CCCAGTTACA GCAGCAGCTT TTGGACCTAC GCACTGCCTC AGGCTTCACT 
    AGAGACCTGG TGGCCCGGGG CCCAGACCTC CATCTGCTCC AAGCCCAGGG CTTGGCACTC 
    ACCCGCCTAA AGGAACTGAA CCAGGGGGCA CCCAGGGCGG CAGATCAGAA CAACCCTGCG 
    GGCATCCAGT TTAGTCCCTG GGAGGAGGCC GGACTGTGCC AAGGGTACCA AATGCAGGGG 
    GTGCTGCAAG TAAAGGCAGC GGATCCTGGC AAATGTGAGG CCCGGGGGGC AGGTCTCCAG 
    TCCGTGTGCC AGGGGCAACC CGCCAGCTTC ACCTTCTTCT GTAGAACTGC AAGTGGGGAC 
    CCCGTGCTGG GGGGGCAGCC GCCAAGCGTC ACCATTGTAC ACAAGGACAC AGACAGATCT 
    CTCCATCCAT CCATCCAAGA CAATCAAGAT GGCACCTTCC ACATCTCCTA TTTGGCCCCG 
    GAGCCCGGGG AGCTCTCCAT CAGCGTCAGC CTGAGGGGCC AACACACCCC GGGCTCTCCA 
    TTCAGTGTGA AGGTGAGGGG CAAATCTCAG CGACACCCAG GCATCTACCA CTGCTGTACA 
    TTCTGCTCCA GCGGGGGCCA GAAGGAGGCT CGGTGTGGAT GTGGTGGCAC CATGCCAGGT 
    GGCTATCAGG GCTGCGGCCA TGGTCACAAG GGCCACCCTG GCCAATCCCA CTGGTCATGT 
    TGTGGAGCCA CCAAGGAGAA ATCAGAGTGT TTAGGAGTCA GTTCCTCTGC CCCCCGAAAC 
    CTGTTGCGCA CTGTGGCTCT GTGA

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

    RefSeq XP_012810693.1
    CDS187..1830
    Translation

    Target ORF information:

    RefSeq Version XM_012955239.2
    Organism Xenopus tropicalis(tropical clawed frog)
    Definition Xenopus tropicalis tripartite motif containing 45 (trim45), transcript variant X1, mRNA.

    Target ORF information:

    Epitope DYKDDDDK
    Bacterial selection AMPR
    Mammalian selection NeoR
    Vector pcDNA3.1+/C-(K)DYK
    		 XM_012955239.2

    ORF Insert Sequence:

    1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    ATGGCAGAGA ATGGCAGCAG GAAGGAAGCC CAGGGTCGGA CTCAGTGCCC CCAGTGCCAG 
    CAGCCTTTCT GCCAGCCCCG GATCCTGCCC TGCCTGCACA CTCTGTGTGG GGGGTGCCTG 
    GCCAAGCTGG AGCCCTTCAG TGCCCTGGGC AAGGGGCACA GCGCTGGCAC CCACTGGAGC 
    GTATTGTGCC CGGTGTGTGA CTCTGAAGTG GCGCTGCCAG CTGGAGGGGT AGAAGAGCTG 
    TTACCGGATT GGTTGGCAGA GGCTGAGGTG CTGCTTGCCC AAGTGCAGAG CGGGGGGCTG 
    GCGCTGCCAT GTGACCTGTG CAGGGAGGGG CAAGCAGAGA AGCGCTGCCA GGAGTGCAAG 
    GTGAACGTGT GTGAGTTCTG CTGCCAAGCG CACAGGCGGC AGAAGAGGAC GGCGGCGCAC 
    CCCCTGCACC CCCTGCAGGA CCTGTCCCTG GGGACCATCC TCCCACCTGC CCCCTGCTGC 
    ACGTTGCACC CCCTGGAGGC ACTTGGGTTG TTCTGTGAGC CCTGCACCGT GCCCTGCTGC 
    CGGGACTGTG CCATCGGCCA TCACAGGGGC CACGATCTCC GGCCGGCGGC TGAATGTGCC 
    GGGGGGCACC GGGAGTCTCT GCTCAGGGCC CTACAGGAGG CTGAACCCCA TATAGAGCAG 
    CTGGAGGCTG CCCTCGGGGG GGTACAGGAG GCGGGGAAGG CTCTGGGGCA GAGAGCTTTG 
    GGGCTGAGGG CAGAGGTTGA GGCCTTCATT GAGGGGTATG TGAGGGCTGT ACTGGAGCAC 
    AAAGCTGCCC TGCTGAGGGA CATTGAGGAG GAGACACAGC GGAGGCAGCA GGTTCTGGCC 
    CTGCGAAAGG CCCAGTTACA GCAGCAGCTT TTGGACCTAC GCACTGCCTC AGGCTTCACT 
    AGAGACCTGG TGGCCCGGGG CCCAGACCTC CATCTGCTCC AAGCCCAGGG CTTGGCACTC 
    ACCCGCCTAA AGGAACTGAA CCAGGGGGCA CCCAGGGCGG CAGATCAGAA CAACCCTGCG 
    GGCATCCAGT TTAGTCCCTG GGAGGAGGCC GGACTGTGCC AAGGGTACCA AATGCAGGGG 
    GTGCTGCAAG TAAAGGCAGC GGATCCTGGC AAATGTGAGG CCCGGGGGGC AGGTCTCCAG 
    TCCGTGTGCC AGGGGCAACC CGCCAGCTTC ACCTTCTTCT GTAGAACTGC AAGTGGGGAC 
    CCCGTGCTGG GGGGGCAGCC GCCAAGCGTC ACCATTGTAC ACAAGGACAC AGACAGATCT 
    CTCCATCCAT CCATCCAAGA CAATCAAGAT GGCACCTTCC ACATCTCCTA TTTGGCCCCG 
    GAGCCCGGGG AGCTCTCCAT CAGCGTCAGC CTGAGGGGCC AACACACCCC GGGCTCTCCA 
    TTCAGTGTGA AGGTGAGGGG CAAATCTCAG CGACACCCAG GCATCTACCA CTGCTGTACA 
    TTCTGCTCCA GCGGGGGCCA GAAGGAGGCT CGGTGTGGAT GTGGTGGCAC CATGCCAGGT 
    GGCTATCAGG GCTGCGGCCA TGGTCACAAG GGCCACCCTG GCCAATCCCA CTGGTCATGT 
    TGTGGAGCCA CCAAGGAGAA ATCAGAGTGT TTAGGAGTCA GTTCCTCTGC CCCCCGAAAC 
    CTGTTGCGCA CTGTGGCTCT GTGA

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

    trim45 ( XM_031895907.1 ) cDNA ORF clone, Xenopus tropicalis(tropical clawed frog) -> XP_031751767.1 Xenopus tropicalis tripartite motif containing 45 (trim45), transcript variant X1, mRNA.
    Price & Availability↑
    CloneID OXa27027
    Clone ID Related Accession (Same CDS sequence) XM_012955239.2 , XM_031895907.1
    Accession Version XM_031895907.1 Latest version! Documents for ORF clone product in default vector
    Sequence Information ORF Nucleotide Sequence (Length: 1644bp)
    Protein sequence
    SNP
    Vector pcDNA3.1-C-(k)DYK or customized vector User Manual
    Clone information Clone Map MSDS
    Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags
    ORF Insert Method CloneEZ™ Seamless cloning technology
    Insert Structure linear
    Update Date 2019-12-17
    Organism Xenopus tropicalis(tropical clawed frog)
    Product tripartite motif-containing protein 45 isoform X1
    Comment Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_030678.2) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Xenopus tropicalis Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.3 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## 

    1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    ATGGCAGAGA ATGGCAGCAG GAAGGAAGCC CAGGGTCGGA CTCAGTGCCC CCAGTGCCAG 
    CAGCCTTTCT GCCAGCCCCG GATCCTGCCC TGCCTGCACA CTCTGTGTGG GGGGTGCCTG 
    GCCAAGCTGG AGCCCTTCAG TGCCCTGGGC AAGGGGCACA GCGCTGGCAC CCACTGGAGC 
    GTATTGTGCC CGGTGTGTGA CTCTGAAGTG GCGCTGCCAG CTGGAGGGGT AGAAGAGCTG 
    TTACCGGATT GGTTGGCAGA GGCTGAGGTG CTGCTTGCCC AAGTGCAGAG CGGGGGGCTG 
    GCGCTGCCAT GTGACCTGTG CAGGGAGGGG CAAGCAGAGA AGCGCTGCCA GGAGTGCAAG 
    GTGAACGTGT GTGAGTTCTG CTGCCAAGCG CACAGGCGGC AGAAGAGGAC GGCGGCGCAC 
    CCCCTGCACC CCCTGCAGGA CCTGTCCCTG GGGACCATCC TCCCACCTGC CCCCTGCTGC 
    ACGTTGCACC CCCTGGAGGC ACTTGGGTTG TTCTGTGAGC CCTGCACCGT GCCCTGCTGC 
    CGGGACTGTG CCATCGGCCA TCACAGGGGC CACGATCTCC GGCCGGCGGC TGAATGTGCC 
    GGGGGGCACC GGGAGTCTCT GCTCAGGGCC CTACAGGAGG CTGAACCCCA TATAGAGCAG 
    CTGGAGGCTG CCCTCGGGGG GGTACAGGAG GCGGGGAAGG CTCTGGGGCA GAGAGCTTTG 
    GGGCTGAGGG CAGAGGTTGA GGCCTTCATT GAGGGGTATG TGAGGGCTGT ACTGGAGCAC 
    AAAGCTGCCC TGCTGAGGGA CATTGAGGAG GAGACACAGC GGAGGCAGCA GGTTCTGGCC 
    CTGCGAAAGG CCCAGTTACA GCAGCAGCTT TTGGACCTAC GCACTGCCTC AGGCTTCACT 
    AGAGACCTGG TGGCCCGGGG CCCAGACCTC CATCTGCTCC AAGCCCAGGG CTTGGCACTC 
    ACCCGCCTAA AGGAACTGAA CCAGGGGGCA CCCAGGGCGG CAGATCAGAA CAACCCTGCG 
    GGCATCCAGT TTAGTCCCTG GGAGGAGGCC GGACTGTGCC AAGGGTACCA AATGCAGGGG 
    GTGCTGCAAG TAAAGGCAGC GGATCCTGGC AAATGTGAGG CCCGGGGGGC AGGTCTCCAG 
    TCCGTGTGCC AGGGGCAACC CGCCAGCTTC ACCTTCTTCT GTAGAACTGC AAGTGGGGAC 
    CCCGTGCTGG GGGGGCAGCC GCCAAGCGTC ACCATTGTAC ACAAGGACAC AGACAGATCT 
    CTCCATCCAT CCATCCAAGA CAATCAAGAT GGCACCTTCC ACATCTCCTA TTTGGCCCCG 
    GAGCCCGGGG AGCTCTCCAT CAGCGTCAGC CTGAGGGGCC AACACACCCC GGGCTCTCCA 
    TTCAGTGTGA AGGTGAGGGG CAAATCTCAG CGACACCCAG GCATCTACCA CTGCTGTACA 
    TTCTGCTCCA GCGGGGGCCA GAAGGAGGCT CGGTGTGGAT GTGGTGGCAC CATGCCAGGT 
    GGCTATCAGG GCTGCGGCCA TGGTCACAAG GGCCACCCTG GCCAATCCCA CTGGTCATGT 
    TGTGGAGCCA CCAAGGAGAA ATCAGAGTGT TTAGGAGTCA GTTCCTCTGC CCCCCGAAAC 
    CTGTTGCGCA CTGTGGCTCT GTGA

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

    RefSeq XP_031751767.1
    CDS170..1813
    Translation

    Target ORF information:

    RefSeq Version XM_031895907.1
    Organism Xenopus tropicalis(tropical clawed frog)
    Definition Xenopus tropicalis tripartite motif containing 45 (trim45), transcript variant X1, mRNA.

    Target ORF information:

    Epitope DYKDDDDK
    Bacterial selection AMPR
    Mammalian selection NeoR
    Vector pcDNA3.1+/C-(K)DYK
    		 XM_031895907.1

    ORF Insert Sequence:

    1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    ATGGCAGAGA ATGGCAGCAG GAAGGAAGCC CAGGGTCGGA CTCAGTGCCC CCAGTGCCAG 
    CAGCCTTTCT GCCAGCCCCG GATCCTGCCC TGCCTGCACA CTCTGTGTGG GGGGTGCCTG 
    GCCAAGCTGG AGCCCTTCAG TGCCCTGGGC AAGGGGCACA GCGCTGGCAC CCACTGGAGC 
    GTATTGTGCC CGGTGTGTGA CTCTGAAGTG GCGCTGCCAG CTGGAGGGGT AGAAGAGCTG 
    TTACCGGATT GGTTGGCAGA GGCTGAGGTG CTGCTTGCCC AAGTGCAGAG CGGGGGGCTG 
    GCGCTGCCAT GTGACCTGTG CAGGGAGGGG CAAGCAGAGA AGCGCTGCCA GGAGTGCAAG 
    GTGAACGTGT GTGAGTTCTG CTGCCAAGCG CACAGGCGGC AGAAGAGGAC GGCGGCGCAC 
    CCCCTGCACC CCCTGCAGGA CCTGTCCCTG GGGACCATCC TCCCACCTGC CCCCTGCTGC 
    ACGTTGCACC CCCTGGAGGC ACTTGGGTTG TTCTGTGAGC CCTGCACCGT GCCCTGCTGC 
    CGGGACTGTG CCATCGGCCA TCACAGGGGC CACGATCTCC GGCCGGCGGC TGAATGTGCC 
    GGGGGGCACC GGGAGTCTCT GCTCAGGGCC CTACAGGAGG CTGAACCCCA TATAGAGCAG 
    CTGGAGGCTG CCCTCGGGGG GGTACAGGAG GCGGGGAAGG CTCTGGGGCA GAGAGCTTTG 
    GGGCTGAGGG CAGAGGTTGA GGCCTTCATT GAGGGGTATG TGAGGGCTGT ACTGGAGCAC 
    AAAGCTGCCC TGCTGAGGGA CATTGAGGAG GAGACACAGC GGAGGCAGCA GGTTCTGGCC 
    CTGCGAAAGG CCCAGTTACA GCAGCAGCTT TTGGACCTAC GCACTGCCTC AGGCTTCACT 
    AGAGACCTGG TGGCCCGGGG CCCAGACCTC CATCTGCTCC AAGCCCAGGG CTTGGCACTC 
    ACCCGCCTAA AGGAACTGAA CCAGGGGGCA CCCAGGGCGG CAGATCAGAA CAACCCTGCG 
    GGCATCCAGT TTAGTCCCTG GGAGGAGGCC GGACTGTGCC AAGGGTACCA AATGCAGGGG 
    GTGCTGCAAG TAAAGGCAGC GGATCCTGGC AAATGTGAGG CCCGGGGGGC AGGTCTCCAG 
    TCCGTGTGCC AGGGGCAACC CGCCAGCTTC ACCTTCTTCT GTAGAACTGC AAGTGGGGAC 
    CCCGTGCTGG GGGGGCAGCC GCCAAGCGTC ACCATTGTAC ACAAGGACAC AGACAGATCT 
    CTCCATCCAT CCATCCAAGA CAATCAAGAT GGCACCTTCC ACATCTCCTA TTTGGCCCCG 
    GAGCCCGGGG AGCTCTCCAT CAGCGTCAGC CTGAGGGGCC AACACACCCC GGGCTCTCCA 
    TTCAGTGTGA AGGTGAGGGG CAAATCTCAG CGACACCCAG GCATCTACCA CTGCTGTACA 
    TTCTGCTCCA GCGGGGGCCA GAAGGAGGCT CGGTGTGGAT GTGGTGGCAC CATGCCAGGT 
    GGCTATCAGG GCTGCGGCCA TGGTCACAAG GGCCACCCTG GCCAATCCCA CTGGTCATGT 
    TGTGGAGCCA CCAAGGAGAA ATCAGAGTGT TTAGGAGTCA GTTCCTCTGC CCCCCGAAAC 
    CTGTTGCGCA CTGTGGCTCT GTGA

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

  • PubMed

    Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.
    Proceedings of the National Academy of Sciences of the United States of America99(26)16899-903(2002 Dec)
    Strausberg RL,Feingold EA,Grouse LH,Derge JG,Klausner RD,Collins FS,Wagner L,Shenmen CM,Schuler GD,Altschul SF,Zeeberg B,Buetow KH,Schaefer CF,Bhat NK,Hopkins RF,Jordan H,Moore T,Max SI,Wang J,Hsieh F,Diatchenko L,Marusina K,Farmer AA,Rubin GM,Hong L,Stapleton M,Soares MB,Bonaldo MF,Casavant TL,Scheetz TE,Brownstein MJ,Usdin TB,Toshiyuki S,Carninci P,Prange C,Raha SS,Loquellano NA,Peters GJ,Abramson RD,Mullahy SJ,Bosak SA,McEwan PJ,McKernan KJ,Malek JA,Gunaratne PH,Richards S,Worley KC,Hale S,Garcia AM,Gay LJ,Hulyk SW,Villalon DK,Muzny DM,Sodergren EJ,Lu X,Gibbs RA,Fahey J,Helton E,Ketteman M,Madan A,Rodrigues S,Sanchez A,Whiting M,Madan A,Young AC,Shevchenko Y,Bouffard GG,Blakesley RW,Touchman JW,Green ED,Dickson MC,Rodriguez AC,Grimwood J,Schmutz J,Myers RM,Butterfield YS,Krzywinski MI,Skalska U,Smailus DE,Schnerch A,Schein JE,Jones SJ,Marra MA,


    Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative.
    Developmental dynamics : an official publication of the American Association of Anatomists225(4)384-91(2002 Dec)
    Klein SL,Strausberg RL,Wagner L,Pontius J,Clifton SW,Richardson P


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