casd1 cDNA ORF clone, Danio rerio(zebrafish)

Gene
Clones
gRNAs

Summary

Gene Symbol	casd1
Entrez Gene ID	692268
Full Name	CAS1 domain containing 1
Synonyms	SOAT,si:dkey-104m9.2,zgc:136291
General protein information	Preferred Names CAS1 domain containing 1 Names N-acetylneuraminate 9-O-acetyltransferase CAS1 domain-containing protein 1 sialate O-acetyltransferase
Gene Type	protein-coding
Organism	Danio rerio(zebrafish)

mRNA and Protein(s)

mRNA	Protein	Name
NM_001278180.1	NP_001265109.1	N-acetylneuraminate 9-O-acetyltransferase

Pathways from BioSystems

Homologies

Danio rerio (zebrafish)	casd1	NP_001265109.1
Anopheles gambiae (African malaria mosquito)	AgaP_AGAP001402	XP_321732.5
Oryza sativa (rice)	Os05g0582100	NP_001056436.2
Oryza sativa (rice)	Os01g0631100	NP_001043644.1
Xenopus tropicalis (tropical clawed frog)	casd1	NP_001135640.1
Homo sapiens (human)	CASD1	NP_075051.4
Bos taurus (cattle)	CASD1	XP_002686702.3
	CASD1	XP_001097112.2
Arabidopsis thaliana (thale cress)	AT2G34410	NP_001031478.1
Arabidopsis thaliana (thale cress)	AT1G29890	NP_174282.2
Pan troglodytes (chimpanzee)	CASD1	XP_519208.3
Canis lupus familiaris (dog)	CASD1	XP_005628575.1
Rattus norvegicus (Norway rat)	LOC678772	XP_006236144.1
Gallus gallus (chicken)	CASD1	XP_001235382.2
Magnaporthe oryzae (rice blast fungus)	MGG_04984	XP_003712483.1
Arabidopsis thaliana (thale cress)	AT5G46340	NP_568662.1
Mus musculus (house mouse)	Casd1	NP_663373.2
Drosophila melanogaster (fruit fly)	CG2938	NP_001259226.1

Gene Ontology
Bibliography

Related articles in PubMed

Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.
Pasquier J, Cabau C, Nguyen T, Jouanno E, Severac D, Braasch I, Journot L, Pontarotti P, Klopp C, Postlethwait JH, Guiguen Y, Bobe J
BMC genomics17368(2016 05)

Zebrafish Collagen Type I: Molecular and Biochemical Characterization of the Major Structural Protein in Bone and Skin.
Gistelinck C, Gioia R, Gagliardi A, Tonelli F, Marchese L, Bianchi L, Landi C, Bini L, Huysseune A, Witten PE, Staes A, Gevaert K, De Rocker N, Menten B, Malfait F, Leikin S, Carra S, Tenni R, Rossi A, De Paepe A, Coucke P, Willaert A, Forlino A
Scientific reports621540(2016 Feb)

RFX transcription factors are essential for hearing in mice.
Elkon R, Milon B, Morrison L, Shah M, Vijayakumar S, Racherla M, Leitch CC, Silipino L, Hadi S, Weiss-Gayet M, Barras E, Schmid CD, Ait-Lounis A, Barnes A, Song Y, Eisenman DJ, Eliyahu E, Frolenkov GI, Strome SE, Durand B, Zaghloul NA, Jones SM, Reith W, Hertzano R
Nature communications68549(2015 Oct)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following casd1 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the casd1 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)	Select
ODa00666	NM_001278180.1 Latest version!	Danio rerio CAS1 domain containing 1 (casd1), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	12-14	$426.30 $609.00

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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

casd1 ( NM_001278180.1 ) cDNA ORF clone, Danio rerio(zebrafish) -> NP_001265109.1 Danio rerio CAS1 domain containing 1 (casd1), mRNA.

Price & Availability↑

CloneID	ODa00666
Clone ID Related Accession (Same CDS sequence)	NM_001278180.1
Accession Version	NM_001278180.1 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 2352bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2019-04-30
Organism	Danio rerio(zebrafish)
Product	N-acetylneuraminate 9-O-acetyltransferase
Comment	Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from BX640469.6. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments. ##Evidence-Data-START## Transcript exon combination :: GFIL01003075.1, GDQH01015318.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA2168446, SAMEA2168447 [ECO:0000348] ##Evidence-Data-END## ##RefSeq-Attributes-START## CDS uses downstream in-frame AUG :: upstream AUG and CDS extension is not conserved ##RefSeq-Attributes-END##

ATGGCGGTCC TGGCCTATAA CCTAGGCAAA CGGGAAATAA ATCAGTATTT CAGCATCAAA 
AATGCAAAGT TGCTGGCAGC CGCCGCTGTC GTCCTTCTCA CTGTGTTTCA CGCGGCTTCT 
CGACATTATG GAAGCAGTGA CACATGTGAC TGGCTGTTAT CCAGTGGACG TTTTTTAGGG 
GACAATGTGT GGCAGCCCTA TGGGTGCATG TTACACAAGT ACAAAAGCAC TGAAGCAAAG 
TTCTGCCTCA GAGAGAAGAG AATAGCATTT GTCGGAGACT CTAGAATACG TCAGCTCTTC 
TATTCTTTCA TCAAAATGAT GAACCCTGAG GTGAAAGAAG TTGGGAACAA GCATGAGAAC 
ATCCCTTTTG TCGATGGTGA TTCCACTGTG AATTTCCTGT GGTACGCAGA AGTGAACAAT 
TCCTTGAAGG AGCAGTTAAT GTTATGGACT GAGGGATCTG CTTCCAAACC ACATGTCATC 
ATCATTGGTG CTGCTACGTG GTCCATTAAG TTGCACAACG GCAAGAGTGA GGCGCTTTTT 
CAGTACAAGG CAAACCTCAC AGCTATAGCA GACACACTGG AAAAACTAGC CGAGCACAGT 
GAAGTCTACT GGGTTCTACA AGATCCTGTT TATGAGGATG TGCTAAGTGA AAGCCGAAAG 
ATGATCACAA ATGAGCAGAT AAATCTGTAC AATGAGGCAG CAGTTAGTAC CCTGAATACC 
AGCAAAAAGA AGGTCAAATT CCTGGAGGCA TCTAGGCAAG CTGCTATGGA GACCATTTCT 
CAGTCGGTGG ACGGCCTGCA TCTTCCTGAG AGCACAAGAG ATGTTGGCGC CATGGTACTT 
ATGAACTCCA TGTGCAACAA GATCCTGAAG CCCATTGATG GCTCCTGCTG TCAGAGCGCT 
CCTCCGCTAA GCGTCCTTCA GAAGCTAGCA GCTGCTGTCC TCCTGGTGTC CGTCGTCTGC 
TTCGTCCTGC TGGGCTTCAG CTCACATCGG AAGAGCAGAC CCGCTCCTGA TGTGGAGAGC 
GGAGAGGAGA AAAAACACCC CGCTGCTGTG GGGCAGCTCA ACCCAAAGGG ACCATTACTG 
GCCATCGGCA AGATGAGCCT CATCATGCTG TACTTCTACC TGTGTGACCG GGCTGACATC 
TTTATGAAGG AGCAGAAATT CTACACACAC TCCGCTTTTT TCATTCCTCT CATCTACATC 
TTCGTTCTGG GTGTCTTCTA CAGTGAGAAC AGCAAAGAGA CAAAACTTTT GAACCGAGAG 
CAGACGGATG AATGGAAGGG CTGGATGCAG CTGGTCATTC TTATTTATCA CATTTCTGGA 
GCCAGCGCAT TCATACCGGT GTACATGCAC GTCCGTGTGC TGGTCGCTGC GTATCTCTTC 
CAAACAGGAT ATGGACACTT CTCCTTCTTC TGGCTAAAGG GAGACTTTGG ACTTTACAGG 
GTTTGTCAGG TTCTCTTCAG GCTTAATTTT CTTGTGGTGG TGCTGTGTCT GGTTATGGAC 
AGGCCTTATC AGTTTTATTA CTTTGTGCCT CTGGTCACCT TTTGGTTTGC AGTTATTTAT 
GCCACAATGG CACTGTGGCC ACAGATTCTT CAAAAGCAAG CTAACGGTAG TGCATTCTGG 
AATCTGGCCC TGTTGTTGAA ACTTCTGGGT TTGCTTCTTT TCATCGGATT TTTTGCATAC 
TCGCAGGAAC TGTTTGAGGG CATTTTCTCT GTATGGCCTC TTTCTAAGCT CTTTGAACTG 
CAAGGAAGCA TCCATGAGTG GTGGTTCAGG TGGAAACTGG ACCGATTTGC TGTGGTCAAT 
GGGATGCTGT TTGCCTTCAT TTACCTGCTG CTGCAGAAAT ATCAGCTGCT GTCTGAAGGC 
AAAGGAGAGC CTCTCTTCTC CAACAAGATT TCCAACTGTC TGCTCTTTGT TTCTGTCGTT 
TCTTTTATGA CGTACTCCAT TTGGGCCAGT GGGTGCAAAA ACAAGTCCGA GTGTAATGAG 
ATGCATCCAT ACATTTCTGT TGTGCAGATT CTGGCTTTCA TTTTGATCCG GAATATTCCT 
GGTTACGCTC GCTCTTTGTA CAGCTCATTC TTTGCATGGT TTGGAAAGAT CTCCCTAGAG 
CTCTTCATAT GCCAGTATCA CATTTGGTTG GCAGCAGACA CCAAGGGCAT CCTGGTCCTC 
ATTCCCGGAA ACCCCACGTT AAACATAATC GTCAGCACCT TCATCTTTGT CTGCGTGGCT 
CATGAAATCT CCCAGATCAC CAATGACCTG GCCCAGGTGG CCATCCCTAA AGAGAGCGGG 
CCTCTGCTGA AGAGACTGCT GGGAGCTGGA GTCTTTCTAG TGCTGGTACT GACACTGTCC 
CAAAAAGACT AA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_001265109.1
CDS	272..2623
Translation	MAVLAYNLGKREINQYFSIKNAKLLAAAAVVLLTVFHAASRHYGSSDTCDWLLSSGRFLGDNVWQPYGCMLHKYKSTEAKFCLREKRIAFVGDSRIRQLFYSFIKMMNPEVKEVGNKHENIPFVDGDSTVNFLWYAEVNNSLKEQLMLWTEGSASKPHVIIIGAATWSIKLHNGKSEALFQYKANLTAIADTLEKLAEHSEVYWVLQDPVYEDVLSESRKMITNEQINLYNEAAVSTLNTSKKKVKFLEASRQAAMETISQSVDGLHLPESTRDVGAMVLMNSMCNKILKPIDGSCCQSAPPLSVLQKLAAAVLLVSVVCFVLLGFSSHRKSRPAPDVESGEEKKHPAAVGQLNPKGPLLAIGKMSLIMLYFYLCDRADIFMKEQKFYTHSAFFIPLIYIFVLGVFYSENSKETKLLNREQTDEWKGWMQLVILIYHISGASAFIPVYMHVRVLVAAYLFQTGYGHFSFFWLKGDFGLYRVCQVLFRLNFLVVVLCLVMDRPYQFYYFVPLVTFWFAVIYATMALWPQILQKQANGSAFWNLALLLKLLGLLLFIGFFAYSQELFEGIFSVWPLSKLFELQGSIHEWWFRWKLDRFAVVNGMLFAFIYLLLQKYQLLSEGKGEPLFSNKISNCLLFVSVVSFMTYSIWASGCKNKSECNEMHPYISVVQILAFILIRNIPGYARSLYSSFFAWFGKISLELFICQYHIWLAADTKGILVLIPGNPTLNIIVSTFIFVCVAHEISQITNDLAQVAIPKESGPLLKRLLGAGVFLVLVLTLSQKD

Target ORF information:

RefSeq Version	NM_001278180.1
Organism	Danio rerio(zebrafish)
Definition	Danio rerio CAS1 domain containing 1 (casd1), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_001278180.1

ORF Insert Sequence:

ATGGCGGTCC TGGCCTATAA CCTAGGCAAA CGGGAAATAA ATCAGTATTT CAGCATCAAA 
AATGCAAAGT TGCTGGCAGC CGCCGCTGTC GTCCTTCTCA CTGTGTTTCA CGCGGCTTCT 
CGACATTATG GAAGCAGTGA CACATGTGAC TGGCTGTTAT CCAGTGGACG TTTTTTAGGG 
GACAATGTGT GGCAGCCCTA TGGGTGCATG TTACACAAGT ACAAAAGCAC TGAAGCAAAG 
TTCTGCCTCA GAGAGAAGAG AATAGCATTT GTCGGAGACT CTAGAATACG TCAGCTCTTC 
TATTCTTTCA TCAAAATGAT GAACCCTGAG GTGAAAGAAG TTGGGAACAA GCATGAGAAC 
ATCCCTTTTG TCGATGGTGA TTCCACTGTG AATTTCCTGT GGTACGCAGA AGTGAACAAT 
TCCTTGAAGG AGCAGTTAAT GTTATGGACT GAGGGATCTG CTTCCAAACC ACATGTCATC 
ATCATTGGTG CTGCTACGTG GTCCATTAAG TTGCACAACG GCAAGAGTGA GGCGCTTTTT 
CAGTACAAGG CAAACCTCAC AGCTATAGCA GACACACTGG AAAAACTAGC CGAGCACAGT 
GAAGTCTACT GGGTTCTACA AGATCCTGTT TATGAGGATG TGCTAAGTGA AAGCCGAAAG 
ATGATCACAA ATGAGCAGAT AAATCTGTAC AATGAGGCAG CAGTTAGTAC CCTGAATACC 
AGCAAAAAGA AGGTCAAATT CCTGGAGGCA TCTAGGCAAG CTGCTATGGA GACCATTTCT 
CAGTCGGTGG ACGGCCTGCA TCTTCCTGAG AGCACAAGAG ATGTTGGCGC CATGGTACTT 
ATGAACTCCA TGTGCAACAA GATCCTGAAG CCCATTGATG GCTCCTGCTG TCAGAGCGCT 
CCTCCGCTAA GCGTCCTTCA GAAGCTAGCA GCTGCTGTCC TCCTGGTGTC CGTCGTCTGC 
TTCGTCCTGC TGGGCTTCAG CTCACATCGG AAGAGCAGAC CCGCTCCTGA TGTGGAGAGC 
GGAGAGGAGA AAAAACACCC CGCTGCTGTG GGGCAGCTCA ACCCAAAGGG ACCATTACTG 
GCCATCGGCA AGATGAGCCT CATCATGCTG TACTTCTACC TGTGTGACCG GGCTGACATC 
TTTATGAAGG AGCAGAAATT CTACACACAC TCCGCTTTTT TCATTCCTCT CATCTACATC 
TTCGTTCTGG GTGTCTTCTA CAGTGAGAAC AGCAAAGAGA CAAAACTTTT GAACCGAGAG 
CAGACGGATG AATGGAAGGG CTGGATGCAG CTGGTCATTC TTATTTATCA CATTTCTGGA 
GCCAGCGCAT TCATACCGGT GTACATGCAC GTCCGTGTGC TGGTCGCTGC GTATCTCTTC 
CAAACAGGAT ATGGACACTT CTCCTTCTTC TGGCTAAAGG GAGACTTTGG ACTTTACAGG 
GTTTGTCAGG TTCTCTTCAG GCTTAATTTT CTTGTGGTGG TGCTGTGTCT GGTTATGGAC 
AGGCCTTATC AGTTTTATTA CTTTGTGCCT CTGGTCACCT TTTGGTTTGC AGTTATTTAT 
GCCACAATGG CACTGTGGCC ACAGATTCTT CAAAAGCAAG CTAACGGTAG TGCATTCTGG 
AATCTGGCCC TGTTGTTGAA ACTTCTGGGT TTGCTTCTTT TCATCGGATT TTTTGCATAC 
TCGCAGGAAC TGTTTGAGGG CATTTTCTCT GTATGGCCTC TTTCTAAGCT CTTTGAACTG 
CAAGGAAGCA TCCATGAGTG GTGGTTCAGG TGGAAACTGG ACCGATTTGC TGTGGTCAAT 
GGGATGCTGT TTGCCTTCAT TTACCTGCTG CTGCAGAAAT ATCAGCTGCT GTCTGAAGGC 
AAAGGAGAGC CTCTCTTCTC CAACAAGATT TCCAACTGTC TGCTCTTTGT TTCTGTCGTT 
TCTTTTATGA CGTACTCCAT TTGGGCCAGT GGGTGCAAAA ACAAGTCCGA GTGTAATGAG 
ATGCATCCAT ACATTTCTGT TGTGCAGATT CTGGCTTTCA TTTTGATCCG GAATATTCCT 
GGTTACGCTC GCTCTTTGTA CAGCTCATTC TTTGCATGGT TTGGAAAGAT CTCCCTAGAG 
CTCTTCATAT GCCAGTATCA CATTTGGTTG GCAGCAGACA CCAAGGGCAT CCTGGTCCTC 
ATTCCCGGAA ACCCCACGTT AAACATAATC GTCAGCACCT TCATCTTTGT CTGCGTGGCT 
CATGAAATCT CCCAGATCAC CAATGACCTG GCCCAGGTGG CCATCCCTAA AGAGAGCGGG 
CCTCTGCTGA AGAGACTGCT GGGAGCTGGA GTCTTTCTAG TGCTGGTACT GACACTGTCC 
CAAAAAGACT AA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PubMed

Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.
BMC genomics17368(2016 05)
Pasquier J,Cabau C,Nguyen T,Jouanno E,Severac D,Braasch I,Journot L,Pontarotti P,Klopp C,Postlethwait JH,Guiguen Y,Bobe J

Zebrafish Collagen Type I: Molecular and Biochemical Characterization of the Major Structural Protein in Bone and Skin.
Scientific reports621540(2016 Feb)
Gistelinck C,Gioia R,Gagliardi A,Tonelli F,Marchese L,Bianchi L,Landi C,Bini L,Huysseune A,Witten PE,Staes A,Gevaert K,De Rocker N,Menten B,Malfait F,Leikin S,Carra S,Tenni R,Rossi A,De Paepe A,Coucke P,Willaert A,Forlino A

RFX transcription factors are essential for hearing in mice.
Nature communications68549(2015 Oct)
Elkon R,Milon B,Morrison L,Shah M,Vijayakumar S,Racherla M,Leitch CC,Silipino L,Hadi S,Weiss-Gayet M,Barras E,Schmid CD,Ait-Lounis A,Barnes A,Song Y,Eisenman DJ,Eliyahu E,Frolenkov GI,Strome SE,Durand B,Zaghloul NA,Jones SM,Reith W,Hertzano R

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casd1 cDNA ORF clone, Danio rerio(zebrafish)

Gene

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gRNAs

Related articles in PubMed

Target ORF information:

Target ORF information:

ORF Insert Sequence:

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