ORF » Species Summary » Danio rerio » ube3d cDNA ORF clone

ube3d cDNA ORF clone, Danio rerio(zebrafish)

The following ube3d gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the ube3d cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID Accession No. Definition **Vector *Turnaround time Price (USD) Select
ODa21049 NM_001326410.1
Latest version!		 Danio rerio ubiquitin protein ligase E3D (ube3d), mRNA. pcDNA3.1-C-(k)DYK or customized vector 7-9 $258.30
$369.00
ODa21050 XM_005157858.3
Latest version!		 Danio rerio ubiquitin protein ligase E3D (ube3d), transcript variant X1, mRNA. pcDNA3.1-C-(k)DYK or customized vector 7-9 $258.30
$369.00

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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

  • Reference Sequences (Refseq)
    ube3d ( NM_001326410.1 ) cDNA ORF clone, Danio rerio(zebrafish) -> NP_001313339.1 Danio rerio ubiquitin protein ligase E3D (ube3d), mRNA.
    Price & Availability↑
    CloneID ODa21049
    Clone ID Related Accession (Same CDS sequence) NM_001326410.1
    Accession Version NM_001326410.1 Latest version! Documents for ORF clone product in default vector
    Sequence Information ORF Nucleotide Sequence (Length: 1167bp)
    Protein sequence
    SNP
    Vector pcDNA3.1-C-(k)DYK or customized vector User Manual
    Clone information Clone Map MSDS
    Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags
    ORF Insert Method CloneEZ™ Seamless cloning technology
    Insert Structure linear
    Update Date 2018-11-23
    Organism Danio rerio(zebrafish)
    Product E3 ubiquitin-protein ligase E3D
    Comment Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from CU929362.9, EH554838.1 and EH575949.1. On May 17, 2016 this sequence version replaced XM_002664774.4. Sequence Note: This RefSeq record was created from transcript and genomic sequence data to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on transcript alignments. ##Evidence-Data-START## Transcript exon combination :: GDQH01037923.1, BC090185.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA2168446, SAMEA2168447 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. 

    1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    ATGGAAGAGA CTGCGAACAC AGATGTCCTC TTTATTGAGC TCAGACAGAA GCTGCAAAGC 
    GGCCTTTTGT TCATTCGCAG TGACGTCATC GGTGGTGGTG CAGATGTGAA GATCGAATCC 
    AAACCAGACT CCATCCTGAA CGTCCAGACT CCTGACAGCA GCTTTCAGGT GACCCTCACA 
    CCTGGAGTCA GTCTGGTGGA GACGCAGAAG CAGAAAAGCC CAGCAAACTC TGAACAAGGC 
    TCCCATTACA GACTACGTCT AAAAGTGGAG CAGCCAACAG AATCTCCTTG CAGTGTGATT 
    GGCCAGCTGA GAGTCGATGA GAGTTACTCC GTACTGTGCC AATCCTGTGG CTCCAGAGTG 
    CTCCAACACA GGTCTTTTGG ACGAGTTCTT CCTTTGCCCA ATGGAAACTG GAATGCATTA 
    GTGGACGACT GGTGCTGCCA TCCAGATCCC TTCGCCAACA GAAAACTGCT GCCGCGAGCT 
    GGAGACTGCC TGCTGGGGGA CACCTTCATT CTGCTGCTGC GGGACGACGG CTGCGATGAG 
    AGTCTGACAC GGGCCGCTGC AGAGAAGCGT GTGCTGGTGT CCTGCAGGAG GTGCTCCACT 
    GCGCTGGGAG AGGAGATCAC TGCGGAGGTG CTGAAGCTCT ACATTACTGA AATATCAGTG 
    AAGCCCAGTG AGGATGGAGA GTGTGATCTA ACACAGCTCA GTTTAGAGCC CAAGTCAGAG 
    TCAGTACGGC AGAGATTTTT GGAGCAAACT CTTGCATCGA GACTGGTGGA GCTTTCAGCA 
    GCACAGAGTA TATTTCGCTT TTCCATTCAA AGCCCAGATG GAAAAGCTGA GATTTTGCTG 
    TGGCTTCTGA ACACCGACAC TCTGGTCGCC TCATTTCCTG CTCCAGCAGC GAGAGCCGAC 
    GGCTTCATCT CCGTCGGTGA CTCGCATCCC AGAATGCATC AGTCATGTCA GGCCGTGGCA 
    GCAGTCAAAG TGCTCTACAT CCTCTGCTCT GACAGCAAGC TCAGAGATGT TGTGGATGTG 
    TGGGAGAAGG ACATCAGCGT TCACCCACTT CCCCTCCCGC AGCGCTCATG TGAGGAGCTC 
    AAGACACTTC TGACGTCCAG CACCTTCAGA CTGCCTGCAT TCCTGCGCTG CATGAACTCC 
    TTTCAGGTGG CCTACATGCG GATGTGA

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

    RefSeq NP_001313339.1
    CDS154..1320
    Translation

    Target ORF information:

    RefSeq Version NM_001326410.1
    Organism Danio rerio(zebrafish)
    Definition Danio rerio ubiquitin protein ligase E3D (ube3d), mRNA.

    Target ORF information:

    Epitope DYKDDDDK
    Bacterial selection AMPR
    Mammalian selection NeoR
    Vector pcDNA3.1+/C-(K)DYK
    		 NM_001326410.1

    ORF Insert Sequence:

    1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    ATGGAAGAGA CTGCGAACAC AGATGTCCTC TTTATTGAGC TCAGACAGAA GCTGCAAAGC 
    GGCCTTTTGT TCATTCGCAG TGACGTCATC GGTGGTGGTG CAGATGTGAA GATCGAATCC 
    AAACCAGACT CCATCCTGAA CGTCCAGACT CCTGACAGCA GCTTTCAGGT GACCCTCACA 
    CCTGGAGTCA GTCTGGTGGA GACGCAGAAG CAGAAAAGCC CAGCAAACTC TGAACAAGGC 
    TCCCATTACA GACTACGTCT AAAAGTGGAG CAGCCAACAG AATCTCCTTG CAGTGTGATT 
    GGCCAGCTGA GAGTCGATGA GAGTTACTCC GTACTGTGCC AATCCTGTGG CTCCAGAGTG 
    CTCCAACACA GGTCTTTTGG ACGAGTTCTT CCTTTGCCCA ATGGAAACTG GAATGCATTA 
    GTGGACGACT GGTGCTGCCA TCCAGATCCC TTCGCCAACA GAAAACTGCT GCCGCGAGCT 
    GGAGACTGCC TGCTGGGGGA CACCTTCATT CTGCTGCTGC GGGACGACGG CTGCGATGAG 
    AGTCTGACAC GGGCCGCTGC AGAGAAGCGT GTGCTGGTGT CCTGCAGGAG GTGCTCCACT 
    GCGCTGGGAG AGGAGATCAC TGCGGAGGTG CTGAAGCTCT ACATTACTGA AATATCAGTG 
    AAGCCCAGTG AGGATGGAGA GTGTGATCTA ACACAGCTCA GTTTAGAGCC CAAGTCAGAG 
    TCAGTACGGC AGAGATTTTT GGAGCAAACT CTTGCATCGA GACTGGTGGA GCTTTCAGCA 
    GCACAGAGTA TATTTCGCTT TTCCATTCAA AGCCCAGATG GAAAAGCTGA GATTTTGCTG 
    TGGCTTCTGA ACACCGACAC TCTGGTCGCC TCATTTCCTG CTCCAGCAGC GAGAGCCGAC 
    GGCTTCATCT CCGTCGGTGA CTCGCATCCC AGAATGCATC AGTCATGTCA GGCCGTGGCA 
    GCAGTCAAAG TGCTCTACAT CCTCTGCTCT GACAGCAAGC TCAGAGATGT TGTGGATGTG 
    TGGGAGAAGG ACATCAGCGT TCACCCACTT CCCCTCCCGC AGCGCTCATG TGAGGAGCTC 
    AAGACACTTC TGACGTCCAG CACCTTCAGA CTGCCTGCAT TCCTGCGCTG CATGAACTCC 
    TTTCAGGTGG CCTACATGCG GATGTGA

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

    ube3d ( XM_005157858.3 ) cDNA ORF clone, Danio rerio(zebrafish) -> XP_005157915.1 Danio rerio ubiquitin protein ligase E3D (ube3d), transcript variant X1, mRNA.
    Price & Availability↑
    CloneID ODa21050
    Clone ID Related Accession (Same CDS sequence) XM_005157858.3
    Accession Version XM_005157858.3 Latest version! Documents for ORF clone product in default vector
    Sequence Information ORF Nucleotide Sequence (Length: 1164bp)
    Protein sequence
    SNP
    Vector pcDNA3.1-C-(k)DYK or customized vector User Manual
    Clone information Clone Map MSDS
    Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags
    ORF Insert Method CloneEZ™ Seamless cloning technology
    Insert Structure linear
    Update Date 2017-06-14
    Organism Danio rerio(zebrafish)
    Product E3 ubiquitin-protein ligase E3D isoform X1
    Comment Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007127.7) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 24, 2016 this sequence version replaced XM_005157858.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## 

    1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    ATGGAAGAGA CTGCGAACAC AGATGTCCTC TTTATTGAGC TCAGACAGAA GCTGCAAAGC 
    GGCCTTTTGT TCATTCGTGA CGTCATCGGT GGTGGTGCAG ATGTGAAGAT CGAATCCAAA 
    CCAGACTCCA TCCTGAACGT CCAGACTCCT GACAGCAGCT TTCAGGTGAC CCTCACACCT 
    GGAGTCAGTC TGGTGGAGAC GCAGAAGCAG AAAAGCCCAG CAAACTCTGA ACAAGGCTCC 
    CATTACAGAC TACGTCTAAA AGTGGAGCAG CCAACAGAAT CTCCTTGCAG TGTGATTGGC 
    CAGCTGAGAG TCGATGAGAG TTACTCCGTA CTGTGCCAAT CCTGTGGCTC CAGAGTGCTC 
    CAACACAGGT CTTTTGGACG AGTTCTTCCT TTGCCCAATG GAAACTGGAA TGCATTAGTG 
    GACGACTGGT GCTGCCATCC AGATCCCTTC GCCAACAGAA AACTGCTGCC GCGAGCTGGA 
    GACTGCCTGC TGGGGGACAC CTTCATTCTG CTGCTGCGGG ACGACGGCTG CGATGAGAGT 
    CTGACACGGG CCGCTGCAGA GAAGCGTGTG CTGGTGTCCT GCAGGAGGTG CTCCACTGCG 
    CTGGGAGAGG AGATCACTGC GGAGGTGCTG AAGCTCTACA TTACTGAAAT ATCAGTGAAG 
    CCCAGTGAGG ATGGAGAGTG TGATCTAACA CAGCTCAGTT TAGAGCCCAA GTCAGAGTCA 
    GTACGGCAGA GATTTTTGGA GCAAACTCTT GCATCGAGAC TGGTGGAGCT TTCAGCAGCA 
    CAGAGTATAT TTCGCTTTTC CATTCAAAGC CCAGATGGAA AAGCTGAGAT TTTGCTGTGG 
    CTTCTGAACA CCGACACTCT GGTCGCCTCA TTTCCTGCTC CAGCAGCGAG AGCCGACGGC 
    TTCATCTCCG TCGGTGACTC GCATCCCAGA ATGCATCAGT CATGTCAGGC CGTGGCAGCA 
    GTCAAAGTGC TCTACATCCT CTGCTCTGAC AGCAAGCTCA GAGATGTTGT GGATGTGTGG 
    GAGAAGGACA TCAGCGTTCA CCCACTTCCC CTCCCGCAGC GCTCATGTGA GGAGCTCAAG 
    ACACTTCTGA CGTCCAGCAC CTTCAGACTG CCTGCATTCC TGCGCTGCAT GAACTCCTTT 
    CAGGTGGCCT ACATGCGGAT GTGA

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

    RefSeq XP_005157915.1
    CDS129..1292
    Translation

    Target ORF information:

    RefSeq Version XM_005157858.3
    Organism Danio rerio(zebrafish)
    Definition Danio rerio ubiquitin protein ligase E3D (ube3d), transcript variant X1, mRNA.

    Target ORF information:

    Epitope DYKDDDDK
    Bacterial selection AMPR
    Mammalian selection NeoR
    Vector pcDNA3.1+/C-(K)DYK
    		 XM_005157858.3

    ORF Insert Sequence:

    1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    ATGGAAGAGA CTGCGAACAC AGATGTCCTC TTTATTGAGC TCAGACAGAA GCTGCAAAGC 
    GGCCTTTTGT TCATTCGTGA CGTCATCGGT GGTGGTGCAG ATGTGAAGAT CGAATCCAAA 
    CCAGACTCCA TCCTGAACGT CCAGACTCCT GACAGCAGCT TTCAGGTGAC CCTCACACCT 
    GGAGTCAGTC TGGTGGAGAC GCAGAAGCAG AAAAGCCCAG CAAACTCTGA ACAAGGCTCC 
    CATTACAGAC TACGTCTAAA AGTGGAGCAG CCAACAGAAT CTCCTTGCAG TGTGATTGGC 
    CAGCTGAGAG TCGATGAGAG TTACTCCGTA CTGTGCCAAT CCTGTGGCTC CAGAGTGCTC 
    CAACACAGGT CTTTTGGACG AGTTCTTCCT TTGCCCAATG GAAACTGGAA TGCATTAGTG 
    GACGACTGGT GCTGCCATCC AGATCCCTTC GCCAACAGAA AACTGCTGCC GCGAGCTGGA 
    GACTGCCTGC TGGGGGACAC CTTCATTCTG CTGCTGCGGG ACGACGGCTG CGATGAGAGT 
    CTGACACGGG CCGCTGCAGA GAAGCGTGTG CTGGTGTCCT GCAGGAGGTG CTCCACTGCG 
    CTGGGAGAGG AGATCACTGC GGAGGTGCTG AAGCTCTACA TTACTGAAAT ATCAGTGAAG 
    CCCAGTGAGG ATGGAGAGTG TGATCTAACA CAGCTCAGTT TAGAGCCCAA GTCAGAGTCA 
    GTACGGCAGA GATTTTTGGA GCAAACTCTT GCATCGAGAC TGGTGGAGCT TTCAGCAGCA 
    CAGAGTATAT TTCGCTTTTC CATTCAAAGC CCAGATGGAA AAGCTGAGAT TTTGCTGTGG 
    CTTCTGAACA CCGACACTCT GGTCGCCTCA TTTCCTGCTC CAGCAGCGAG AGCCGACGGC 
    TTCATCTCCG TCGGTGACTC GCATCCCAGA ATGCATCAGT CATGTCAGGC CGTGGCAGCA 
    GTCAAAGTGC TCTACATCCT CTGCTCTGAC AGCAAGCTCA GAGATGTTGT GGATGTGTGG 
    GAGAAGGACA TCAGCGTTCA CCCACTTCCC CTCCCGCAGC GCTCATGTGA GGAGCTCAAG 
    ACACTTCTGA CGTCCAGCAC CTTCAGACTG CCTGCATTCC TGCGCTGCAT GAACTCCTTT 
    CAGGTGGCCT ACATGCGGAT GTGA

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

  • PubMed

    RFX transcription factors are essential for hearing in mice.
    Nature communications68549(2015 Oct)
    Elkon R,Milon B,Morrison L,Shah M,Vijayakumar S,Racherla M,Leitch CC,Silipino L,Hadi S,Weiss-Gayet M,Barras E,Schmid CD,Ait-Lounis A,Barnes A,Song Y,Eisenman DJ,Eliyahu E,Frolenkov GI,Strome SE,Durand B,Zaghloul NA,Jones SM,Reith W,Hertzano R


    Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.
    Proceedings of the National Academy of Sciences of the United States of America99(26)16899-903(2002 Dec)
    Strausberg RL,Feingold EA,Grouse LH,Derge JG,Klausner RD,Collins FS,Wagner L,Shenmen CM,Schuler GD,Altschul SF,Zeeberg B,Buetow KH,Schaefer CF,Bhat NK,Hopkins RF,Jordan H,Moore T,Max SI,Wang J,Hsieh F,Diatchenko L,Marusina K,Farmer AA,Rubin GM,Hong L,Stapleton M,Soares MB,Bonaldo MF,Casavant TL,Scheetz TE,Brownstein MJ,Usdin TB,Toshiyuki S,Carninci P,Prange C,Raha SS,Loquellano NA,Peters GJ,Abramson RD,Mullahy SJ,Bosak SA,McEwan PJ,McKernan KJ,Malek JA,Gunaratne PH,Richards S,Worley KC,Hale S,Garcia AM,Gay LJ,Hulyk SW,Villalon DK,Muzny DM,Sodergren EJ,Lu X,Gibbs RA,Fahey J,Helton E,Ketteman M,Madan A,Rodrigues S,Sanchez A,Whiting M,Madan A,Young AC,Shevchenko Y,Bouffard GG,Blakesley RW,Touchman JW,Green ED,Dickson MC,Rodriguez AC,Grimwood J,Schmutz J,Myers RM,Butterfield YS,Krzywinski MI,Skalska U,Smailus DE,Schnerch A,Schein JE,Jones SJ,Marra MA,


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