Gene Symbol | VIM1 |
Entrez Gene ID | 842157 |
Full Name | Zinc finger (C3HC4-type RING finger) family protein |
Synonyms | F12K22.14,F12K22_14,ORTH2,ORTHRUS 2,VARIANT IN METHYLATION 1 |
Gene Type | protein-coding |
Organism | Arabidopsis thaliana(thale cress) |
ORF » Species Summary » Arabidopsis thaliana » VIM1 cDNA ORF clone
Gene Symbol | VIM1 |
Entrez Gene ID | 842157 |
Full Name | Zinc finger (C3HC4-type RING finger) family protein |
Synonyms | F12K22.14,F12K22_14,ORTH2,ORTHRUS 2,VARIANT IN METHYLATION 1 |
Gene Type | protein-coding |
Organism | Arabidopsis thaliana(thale cress) |
mRNA | Protein | Name |
---|---|---|
NM_202316.2 | NP_974045.1 | Zinc finger (C3HC4-type RING finger) family protein |
NM_104576.6 | NP_176092.2 | Zinc finger (C3HC4-type RING finger) family protein |
NM_001333806.1 | NP_001319260.1 | Zinc finger (C3HC4-type RING finger) family protein |
Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.
Theologis A, Ecker JR, Palm CJ, Federspiel NA, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman CL, Brooks SY, Buehler E, Chan A, Chao Q, Chen H, Cheuk RF, Chin CW, Chung MK, Conn L, Conway AB, Conway AR, Creasy TH, Dewar K, Dunn P, Etgu P, Feldblyum TV, Feng J, Fong B, Fujii CY, Gill JE, Goldsmith AD, Haas B, Hansen NF, Hughes B, Huizar L, Hunter JL, Jenkins J, Johnson-Hopson C, Khan S, Khaykin E, Kim CJ, Koo HL, Kremenetskaia I, Kurtz DB, Kwan A, Lam B, Langin-Hooper S, Lee A, Lee JM, Lenz CA, Li JH, Li Y, Lin X, Liu SX, Liu ZA, Luros JS, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman WC, Osborne BI, Pai G, Peterson J, Pham PK, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg SL, Schwartz JR, Shinn P, Southwick AM, Sun H, Tallon LJ, Tambunga G, Toriumi MJ, Town CD, Utterback T, Van Aken S, Vaysberg M, Vysotskaia VS, Walker M, Wu D, Yu G, Fraser CM, Venter JC, Davis RW
Nature408(6814)816-20(2000 Dec)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
VIM proteins function in transcriptional regulation via their roles in the MET1 DNA methylation pathway.
Title: VIM proteins regulate transcription exclusively through the MET1 cytosine methylation pathway.
Observed full-length VIM1 binds preferentially to hemi-methylated DNA with a single modified 5mCpG site. However, when 5hmC replaces one or both cytosine residues at a palindromic CpG site, VIM1 binds with approximately >/=10-fold lower affinity.
Title: Heterologous expression and purification of Arabidopsis thaliana VIM1 protein: in vitro evidence for its inability to recognize hydroxymethylcytosine, a rare base in Arabidopsis DNA.
VIM1, VIM2, and VIM3 have overlapping functions in maintenance of global CpG methylation and epigenetic transcriptional silencing.
Title: Three SRA-domain methylcytosine-binding proteins cooperate to maintain global CpG methylation and epigenetic silencing in Arabidopsis.
findings suggest that VIM1 (AT1G57820) acts at the DNA methylation-histone interface to maintain centromeric heterochromatin
Title: VIM1, a methylcytosine-binding protein required for centromeric heterochromatinization.
The following VIM1 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the VIM1 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | OAb26553 | |
Clone ID Related Accession (Same CDS sequence) | NM_104576.6 , NM_001333806.1 | |
Accession Version | NM_104576.6 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1938bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-02-13 | |
Organism | Arabidopsis thaliana(thale cress) | |
Product | Zinc finger (C3HC4-type RING finger) family protein | |
Comment | Comment: REVIEWED REFSEQ: This record has been curated by TAIR and Araport. This record is derived from an annotated genomic sequence (NC_003070). On Sep 12, 2016 this sequence version replaced NM_104576.5. |
1 | ATGGCGCGTG ACATCCAACT CCCCTGCGAC GGCGACGGCG TATGCATGCG ATGCAAATCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_176092.2 |
CDS | 214..2151 |
Translation |
Target ORF information:
Target ORF information:
|
NM_104576.6 |
1 | ATGGCGCGTG ACATCCAACT CCCCTGCGAC GGCGACGGCG TATGCATGCG ATGCAAATCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OAb26553 | |
Clone ID Related Accession (Same CDS sequence) | NM_104576.6 , NM_001333806.1 | |
Accession Version | NM_001333806.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1938bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-02-13 | |
Organism | Arabidopsis thaliana(thale cress) | |
Product | Zinc finger (C3HC4-type RING finger) family protein | |
Comment | Comment: REVIEWED REFSEQ: This record has been curated by TAIR and Araport. This record is derived from an annotated genomic sequence (NC_003070). |
1 | ATGGCGCGTG ACATCCAACT CCCCTGCGAC GGCGACGGCG TATGCATGCG ATGCAAATCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001319260.1 |
CDS | 214..2151 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001333806.1 |
1 | ATGGCGCGTG ACATCCAACT CCCCTGCGAC GGCGACGGCG TATGCATGCG ATGCAAATCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OAb26554 | |
Clone ID Related Accession (Same CDS sequence) | NM_202316.2 | |
Accession Version | NM_202316.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1929bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-02-13 | |
Organism | Arabidopsis thaliana(thale cress) | |
Product | Zinc finger (C3HC4-type RING finger) family protein | |
Comment | Comment: REVIEWED REFSEQ: This record has been curated by TAIR and Araport. This record is derived from an annotated genomic sequence (NC_003070). On Apr 18, 2007 this sequence version replaced NM_202316.1. |
1 | ATGGCGCGTG ACATCCAACT CCCCTGCGAC GGCGACGGCG TATGCATGCG ATGCAAATCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_974045.1 |
CDS | 36..1964 |
Translation |
Target ORF information:
Target ORF information:
|
NM_202316.2 |
1 | ATGGCGCGTG ACATCCAACT CCCCTGCGAC GGCGACGGCG TATGCATGCG ATGCAAATCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. |