Gene Symbol | LOC100487167 |
Entrez Gene ID | 100487167 |
Full Name | harbinger transposase derived 1-like |
Gene Type | protein-coding |
Organism | Xenopus tropicalis(tropical clawed frog) |
ORF » Species Summary » Xenopus tropicalis » LOC100487167 cDNA ORF clone
Gene Symbol | LOC100487167 |
Entrez Gene ID | 100487167 |
Full Name | harbinger transposase derived 1-like |
Gene Type | protein-coding |
Organism | Xenopus tropicalis(tropical clawed frog) |
mRNA | Protein | Name |
---|---|---|
XM_031903282.1 | XP_031759142.1 | harbinger transposase derived 1-like isoform X3 |
NM_001348538.1 | NP_001335467.1 | harbinger transposase derived 1-like |
NM_001310119.1 | NP_001297048.1 | harbinger transposase derived 1-like isoform 1 |
XM_031903279.1 | XP_031759139.1 | harbinger transposase derived 1-like isoform X1 |
XM_031903283.1 | XP_031759143.1 | harbinger transposase derived 1-like isoform X4 |
XM_031903280.1 | XP_031759140.1 | harbinger transposase derived 1-like isoform X1 |
XM_031903281.1 | XP_031759141.1 | harbinger transposase derived 1-like isoform X2 |
Xenopus tropicalis (tropical clawed frog) | LOC100498422 | XP_002938332.2 |
Xenopus tropicalis (tropical clawed frog) | LOC100492963 | XP_004915999.1 |
Xenopus tropicalis (tropical clawed frog) | LOC100487167 | XP_004919077.1 |
Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative.
Klein SL, Strausberg RL, Wagner L, Pontius J, Clifton SW, Richardson P
Developmental dynamics : an official publication of the American Association of Anatomists225(4)384-91(2002 Dec)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following LOC100487167 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the LOC100487167 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | OXa33813 | |
Clone ID Related Accession (Same CDS sequence) | NM_001310119.1 | |
Accession Version | NM_001310119.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1422bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2017-02-18 | |
Organism | Xenopus tropicalis(tropical clawed frog) | |
Product | harbinger transposase derived 1-like isoform 1 | |
Comment | Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC166249.1. ##Evidence-Data-START## Transcript exon combination :: BC166249.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA2431827, SAMN00861990 [ECO:0000348] ##Evidence-Data-END## |
1 | ATGAGTGTGG GGCCCTCCTA TCTGCGCACA GCCAGAGGGT CCCCACCCAT TCCCAACATG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001297048.1 |
CDS | 60..1481 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001310119.1 |
1 | ATGAGTGTGG GGCCCTCCTA TCTGCGCACA GCCAGAGGGT CCCCACCCAT TCCCAACATG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OXa47190 | |
Clone ID Related Accession (Same CDS sequence) | NM_001348538.1 | |
Accession Version | NM_001348538.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1365bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-12-21 | |
Organism | Xenopus tropicalis(tropical clawed frog) | |
Product | harbinger transposase derived 1-like | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from CX926719.1, DR833292.1, BC166249.1 and CX926718.1. ##Evidence-Data-START## Transcript exon combination :: CF220714.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN05930348, SAMN06679842 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. |
1 | ATGGAGTCAC ACTTTTCCAG TTCTCCAGAG ATGGAACCAA GGAGGTTAGA GGGGAAATGG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001335467.1 |
CDS | 325..1689 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001348538.1 |
1 | ATGGAGTCAC ACTTTTCCAG TTCTCCAGAG ATGGAACCAA GGAGGTTAGA GGGGAAATGG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OXa18074 | |
Clone ID Related Accession (Same CDS sequence) | XM_031903279.1 , XM_031903280.1 | |
Accession Version | XM_031903279.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1398bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-12-17 | |
Organism | Xenopus tropicalis(tropical clawed frog) | |
Product | harbinger transposase derived 1-like isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_030682.2) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Xenopus tropicalis Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.3 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGAGTCAC ACTTTTCCAG TTCTCCAGAG ATGGAACCAA GGAGGTTAGA GGGGAAATGG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_031759139.1 |
CDS | 343..1740 |
Translation |
Target ORF information:
Target ORF information:
|
XM_031903279.1 |
1 | ATGGAGTCAC ACTTTTCCAG TTCTCCAGAG ATGGAACCAA GGAGGTTAGA GGGGAAATGG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OXa18074 | |
Clone ID Related Accession (Same CDS sequence) | XM_031903279.1 , XM_031903280.1 | |
Accession Version | XM_031903280.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1398bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-12-17 | |
Organism | Xenopus tropicalis(tropical clawed frog) | |
Product | harbinger transposase derived 1-like isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_030682.2) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Xenopus tropicalis Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.3 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGAGTCAC ACTTTTCCAG TTCTCCAGAG ATGGAACCAA GGAGGTTAGA GGGGAAATGG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_031759140.1 |
CDS | 417..1814 |
Translation |
Target ORF information:
Target ORF information:
|
XM_031903280.1 |
1 | ATGGAGTCAC ACTTTTCCAG TTCTCCAGAG ATGGAACCAA GGAGGTTAGA GGGGAAATGG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OXa18075 | |
Clone ID Related Accession (Same CDS sequence) | XM_031903281.1 | |
Accession Version | XM_031903281.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1365bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-12-17 | |
Organism | Xenopus tropicalis(tropical clawed frog) | |
Product | harbinger transposase derived 1-like isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_030682.2) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Xenopus tropicalis Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.3 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGAGTCAC ACTTTTCCAG TTCTCCAGAG ATGGAACCAA GGAGGTTAGA GGGGAAATGG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_031759141.1 |
CDS | 234..1598 |
Translation |
Target ORF information:
Target ORF information:
|
XM_031903281.1 |
1 | ATGGAGTCAC ACTTTTCCAG TTCTCCAGAG ATGGAACCAA GGAGGTTAGA GGGGAAATGG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OXa59576 | |
Clone ID Related Accession (Same CDS sequence) | XM_031903282.1 | |
Accession Version | XM_031903282.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1287bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-12-17 | |
Organism | Xenopus tropicalis(tropical clawed frog) | |
Product | harbinger transposase derived 1-like isoform X3 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_030682.2) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Xenopus tropicalis Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.3 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGAGTCAC ACTTTTCCAC TTTACACGGC CCTGTCTCTT CCTTACTGGC AGCTTCCCCA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_031759142.1 |
CDS | 342..1628 |
Translation |
Target ORF information:
Target ORF information:
|
XM_031903282.1 |
1 | ATGGAGTCAC ACTTTTCCAC TTTACACGGC CCTGTCTCTT CCTTACTGGC AGCTTCCCCA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OXa59577 | |
Clone ID Related Accession (Same CDS sequence) | XM_031903283.1 | |
Accession Version | XM_031903283.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1254bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-12-17 | |
Organism | Xenopus tropicalis(tropical clawed frog) | |
Product | harbinger transposase derived 1-like isoform X4 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_030682.2) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Xenopus tropicalis Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.3 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGAGTCAC ACTTTTCCAC TTCCCCAGCT CCACAGCCAG AAATATTACA GATAAAGATA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_031759143.1 |
CDS | 342..1595 |
Translation |
Target ORF information:
Target ORF information:
|
XM_031903283.1 |
1 | ATGGAGTCAC ACTTTTCCAC TTCCCCAGCT CCACAGCCAG AAATATTACA GATAAAGATA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. |