| Gene Symbol | DDX39B |
| Entrez Gene ID | 448813 |
| Full Name | DExD-box helicase 39B |
| Synonyms | BAT1 |
| Gene Type | protein-coding |
| Organism | Sus scrofa(Pig) |
| Genome |
ORF » Species Summary » Sus scrofa » DDX39B cDNA ORF clone
| Gene Symbol | DDX39B |
| Entrez Gene ID | 448813 |
| Full Name | DExD-box helicase 39B |
| Synonyms | BAT1 |
| Gene Type | protein-coding |
| Organism | Sus scrofa(Pig) |
| Genome |
| mRNA | Protein | Name |
|---|---|---|
| XM_005665793.2 | XP_005665850.1 | spliceosome RNA helicase DDX39B isoform X2 |
| XM_005665794.2 | XP_005665851.1 | spliceosome RNA helicase DDX39B isoform X2 |
| XM_005665792.3 | XP_005665849.1 | spliceosome RNA helicase DDX39B isoform X2 |
| XM_005665793.3 | XP_005665850.1 | spliceosome RNA helicase DDX39B isoform X3 |
| NM_001005157.1 | NP_001005157.1 | spliceosome RNA helicase DDX39B |
| XM_021098341.1 | XP_020954000.1 | spliceosome RNA helicase DDX39B isoform X1 |
| XM_005665794.3 | XP_005665851.1 | spliceosome RNA helicase DDX39B isoform X3 |
| XM_005665792.2 | XP_005665849.1 | spliceosome RNA helicase DDX39B isoform X1 |
PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries.
Uenishi H, Eguchi T, Suzuki K, Sawazaki T, Toki D, Shinkai H, Okumura N, Hamasima N, Awata T
Nucleic acids research32(Database issue)D484-8(2004 Jan)
Sequence of the swine major histocompatibility complex region containing all non-classical class I genes.
Chardon P, Rogel-Gaillard C, Cattolico L, Duprat S, Vaiman M, Renard C
Tissue antigens57(1)55-65(2001 Jan)
A first map of the porcine major histocompatibility complex class I region.
Velten F, Rogel-Gaillard C, Renard C, Pontarotti P, Tazi-Ahnini R, Vaiman M, Chardon P
Tissue antigens51(2)183-94(1998 Feb)
A detailed physical map of the porcine major histocompatibility complex (MHC) class III region: comparison with human and mouse MHC class III regions.
Peelman LJ, Chardon P, Vaiman M, Mattheeuws M, Van Zeveren A, Van de Weghe A, Bouquet Y, Campbell RD
Mammalian genome : official journal of the International Mammalian Genome Society7(5)363-7(1996 May)
Characterization of six new loci within the swine major histocompatibility complex class III region.
Nunes M, Peelman L, Vaiman M, Bourgeaux N, Chardon P
Mammalian genome : official journal of the International Mammalian Genome Society5(10)616-22(1994 Oct)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following DDX39B gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the DDX39B cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
| CloneID | OSe30521 | |
| Clone ID Related Accession (Same CDS sequence) | XM_005665793.3 , NM_001005157.1 , XM_005665794.3 | |
| Accession Version | NM_001005157.1 Latest version! | Documents for ORF clone product in default vector |
| Sequence Information | ORF Nucleotide Sequence (Length: 1287bp) Protein sequence SNP |
|
| Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
| Clone information | Clone Map | MSDS |
| Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
| ORF Insert Method | CloneEZ™ Seamless cloning technology | |
| Insert Structure | linear | |
| Update Date | 2019-10-18 | |
| Organism | Sus scrofa(pig) | |
| Product | spliceosome RNA helicase DDX39B | |
| Comment | Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AJ251914.1. ##Evidence-Data-START## Transcript exon combination :: EU282340.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA1487420, SAMEA1876824 [ECO:0000348] ##Evidence-Data-END## | |
1 | ATGGCAGAGA ACGATGTGGA CAATGAGCTC TTGGATTATG AAGACGATGA GGTGGAGACA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| RefSeq | NP_001005157.1 |
| CDS | 1..1287 |
| Translation |
Target ORF information:
Target ORF information:
|
NM_001005157.1 |
1 | ATGGCAGAGA ACGATGTGGA CAATGAGCTC TTGGATTATG AAGACGATGA GGTGGAGACA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| CloneID | OSe13414 | |
| Clone ID Related Accession (Same CDS sequence) | XM_005665792.2 | |
| Accession Version | XM_005665792.2 Latest version! | Documents for ORF clone product in default vector |
| Sequence Information | ORF Nucleotide Sequence (Length: 1416bp) Protein sequence SNP |
|
| Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
| Clone information | Clone Map | MSDS |
| Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
| ORF Insert Method | CloneEZ™ Seamless cloning technology | |
| Insert Structure | linear | |
| Update Date | 2015-09-10 | |
| Organism | Sus scrofa(Pig) | |
| Product | spliceosome RNA helicase DDX39B isoform X1 | |
| Comment | MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003610614.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Sep 11, 2015 this sequence version replaced XM_005665792.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Sus scrofa Annotation Release 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## | |
1 | ATGAGAGCTC TTCTGTCAGA AACTAGTATT TCTTTTCCTC TCCTGTTCCT CGAGCCTCCA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| RefSeq | XP_005665849.1 |
| CDS | 108..1523 |
| Translation |
Target ORF information:
Target ORF information:
|
XM_005665792.2 |
1 | ATGAGAGCTC TTCTGTCAGA AACTAGTATT TCTTTTCCTC TCCTGTTCCT CGAGCCTCCA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| CloneID | OSe13415 | |
| Clone ID Related Accession (Same CDS sequence) | XM_005665793.2 , XM_005665794.2 | |
| Accession Version | XM_005665793.2 Latest version! | Documents for ORF clone product in default vector |
| Sequence Information | ORF Nucleotide Sequence (Length: 1287bp) Protein sequence SNP |
|
| Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
| Clone information | Clone Map | MSDS |
| Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
| ORF Insert Method | CloneEZ™ Seamless cloning technology | |
| Insert Structure | linear | |
| Update Date | 2015-09-10 | |
| Organism | Sus scrofa(Pig) | |
| Product | spliceosome RNA helicase DDX39B isoform X2 | |
| Comment | MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003610614.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Sep 11, 2015 this sequence version replaced XM_005665793.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Sus scrofa Annotation Release 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## | |
1 | ATGGCAGAGA ACGATGTGGA CAATGAGCTC TTGGATTATG AAGACGATGA GGTGGAGACA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| RefSeq | XP_005665850.1 |
| CDS | 239..1525 |
| Translation |
Target ORF information:
Target ORF information:
|
XM_005665793.2 |
1 | ATGGCAGAGA ACGATGTGGA CAATGAGCTC TTGGATTATG AAGACGATGA GGTGGAGACA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| CloneID | OSe13415 | |
| Clone ID Related Accession (Same CDS sequence) | XM_005665793.2 , XM_005665794.2 | |
| Accession Version | XM_005665794.2 Latest version! | Documents for ORF clone product in default vector |
| Sequence Information | ORF Nucleotide Sequence (Length: 1287bp) Protein sequence SNP |
|
| Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
| Clone information | Clone Map | MSDS |
| Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
| ORF Insert Method | CloneEZ™ Seamless cloning technology | |
| Insert Structure | linear | |
| Update Date | 2015-09-10 | |
| Organism | Sus scrofa(Pig) | |
| Product | spliceosome RNA helicase DDX39B isoform X2 | |
| Comment | MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003610614.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Sep 11, 2015 this sequence version replaced XM_005665794.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Sus scrofa Annotation Release 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## | |
1 | ATGGCAGAGA ACGATGTGGA CAATGAGCTC TTGGATTATG AAGACGATGA GGTGGAGACA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| RefSeq | XP_005665851.1 |
| CDS | 285..1571 |
| Translation |
Target ORF information:
Target ORF information:
|
XM_005665794.2 |
1 | ATGGCAGAGA ACGATGTGGA CAATGAGCTC TTGGATTATG AAGACGATGA GGTGGAGACA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| CloneID | OSe30521 | |
| Clone ID Related Accession (Same CDS sequence) | XM_005665793.3 , NM_001005157.1 , XM_005665794.3 | |
| Accession Version | XM_005665793.3 Latest version! | Documents for ORF clone product in default vector |
| Sequence Information | ORF Nucleotide Sequence (Length: 1287bp) Protein sequence SNP |
|
| Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
| Clone information | Clone Map | MSDS |
| Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
| ORF Insert Method | CloneEZ™ Seamless cloning technology | |
| Insert Structure | linear | |
| Update Date | 2017-05-12 | |
| Organism | Sus scrofa(pig) | |
| Product | spliceosome RNA helicase DDX39B isoform X3 | |
| Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_010449.5) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On May 13, 2017 this sequence version replaced XM_005665793.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Sus scrofa Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## | |
1 | ATGGCAGAGA ACGATGTGGA CAATGAGCTC TTGGATTATG AAGACGATGA GGTGGAGACA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| RefSeq | XP_005665850.1 |
| CDS | 224..1510 |
| Translation |
Target ORF information:
Target ORF information:
|
XM_005665793.3 |
1 | ATGGCAGAGA ACGATGTGGA CAATGAGCTC TTGGATTATG AAGACGATGA GGTGGAGACA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| CloneID | OSe30521 | |
| Clone ID Related Accession (Same CDS sequence) | XM_005665793.3 , NM_001005157.1 , XM_005665794.3 | |
| Accession Version | XM_005665794.3 Latest version! | Documents for ORF clone product in default vector |
| Sequence Information | ORF Nucleotide Sequence (Length: 1287bp) Protein sequence SNP |
|
| Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
| Clone information | Clone Map | MSDS |
| Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
| ORF Insert Method | CloneEZ™ Seamless cloning technology | |
| Insert Structure | linear | |
| Update Date | 2017-05-12 | |
| Organism | Sus scrofa(pig) | |
| Product | spliceosome RNA helicase DDX39B isoform X3 | |
| Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_010449.5) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On May 13, 2017 this sequence version replaced XM_005665794.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Sus scrofa Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## | |
1 | ATGGCAGAGA ACGATGTGGA CAATGAGCTC TTGGATTATG AAGACGATGA GGTGGAGACA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| RefSeq | XP_005665851.1 |
| CDS | 288..1574 |
| Translation |
Target ORF information:
Target ORF information:
|
XM_005665794.3 |
1 | ATGGCAGAGA ACGATGTGGA CAATGAGCTC TTGGATTATG AAGACGATGA GGTGGAGACA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| CloneID | OSe222534 | |
| Clone ID Related Accession (Same CDS sequence) | XM_005665792.3 | |
| Accession Version | XM_005665792.3 Latest version! | Documents for ORF clone product in default vector |
| Sequence Information | ORF Nucleotide Sequence (Length: 1416bp) Protein sequence SNP |
|
| Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
| Clone information | Clone Map | MSDS |
| Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
| ORF Insert Method | CloneEZ™ Seamless cloning technology | |
| Insert Structure | linear | |
| Update Date | 2017-05-12 | |
| Organism | Sus scrofa(pig) | |
| Product | spliceosome RNA helicase DDX39B isoform X2 | |
| Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_010449.5) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On May 13, 2017 this sequence version replaced XM_005665792.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Sus scrofa Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## | |
1 | ATGAGAGCTC TTCTGTCAGA AACTAGTATT TCTTTTCCTC TCCTGTTCCT CGAGCCTCCA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| RefSeq | XP_005665849.1 |
| CDS | 108..1523 |
| Translation |
Target ORF information:
Target ORF information:
|
XM_005665792.3 |
1 | ATGAGAGCTC TTCTGTCAGA AACTAGTATT TCTTTTCCTC TCCTGTTCCT CGAGCCTCCA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| CloneID | OSe222533 | |
| Clone ID Related Accession (Same CDS sequence) | XM_021098341.1 | |
| Accession Version | XM_021098341.1 Latest version! | Documents for ORF clone product in default vector |
| Sequence Information | ORF Nucleotide Sequence (Length: 1527bp) Protein sequence SNP |
|
| Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
| Clone information | Clone Map | MSDS |
| Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
| ORF Insert Method | CloneEZ™ Seamless cloning technology | |
| Insert Structure | linear | |
| Update Date | 2017-05-12 | |
| Organism | Sus scrofa(pig) | |
| Product | spliceosome RNA helicase DDX39B isoform X1 | |
| Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_010449.5) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Sus scrofa Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## | |
1 | ATGAATTTTT CCCGGTCTGG CATTTCTCTA GACCCCTCCC CCCGCCATAA GTTACCCAAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| RefSeq | XP_020954000.1 |
| CDS | 428..1954 |
| Translation |
Target ORF information:
Target ORF information:
|
XM_021098341.1 |
1 | ATGAATTTTT CCCGGTCTGG CATTTCTCTA GACCCCTCCC CCCGCCATAA GTTACCCAAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. |
Sequence of the swine major histocompatibility complex region containing all non-classical class I genes. |
A first map of the porcine major histocompatibility complex class I region. |
A detailed physical map of the porcine major histocompatibility complex (MHC) class III region: comparison with human and mouse MHC class III regions. |
Characterization of six new loci within the swine major histocompatibility complex class III region. |