Gene Symbol | SPNS1 |
Entrez Gene ID | 100517643 |
Full Name | sphingolipid transporter 1 (putative) |
Gene Type | protein-coding |
Organism | Sus scrofa(Pig) |
ORF » Species Summary » Sus scrofa » SPNS1 cDNA ORF clone
Gene Symbol | SPNS1 |
Entrez Gene ID | 100517643 |
Full Name | sphingolipid transporter 1 (putative) |
Gene Type | protein-coding |
Organism | Sus scrofa(Pig) |
mRNA | Protein | Name |
---|---|---|
XM_005662045.2 | XP_005662102.1 | protein spinster homolog 1 isoform X2 |
NM_001243020.1 | NP_001229949.1 | protein spinster homolog 1 |
XM_005662042.2 | XP_005662099.1 | protein spinster homolog 1 isoform X1 |
XM_005662044.2 | XP_005662101.1 | protein spinster homolog 1 isoform X2 |
XM_005662046.2 | XP_005662103.1 | protein spinster homolog 1 isoform X2 |
XM_005662043.2 | XP_005662100.1 | protein spinster homolog 1 isoform X2 |
XM_013995588.1 | XP_013851042.1 | protein spinster homolog 1 isoform X3 |
PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences.
Uenishi H, Eguchi-Ogawa T, Shinkai H, Okumura N, Suzuki K, Toki D, Hamasima N, Awata T
Nucleic acids research35(Database issue)D650-3(2007 Jan)
PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries.
Uenishi H, Eguchi T, Suzuki K, Sawazaki T, Toki D, Shinkai H, Okumura N, Hamasima N, Awata T
Nucleic acids research32(Database issue)D484-8(2004 Jan)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following SPNS1 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the SPNS1 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | OSe28469 | |
Clone ID Related Accession (Same CDS sequence) | NM_001243020.1 | |
Accession Version | NM_001243020.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1587bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-08-17 | |
Organism | Sus scrofa(pig) | |
Product | protein spinster homolog 1 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AK348225.1. On Jul 15, 2011 this sequence version replaced XM_003124521.2. ##Evidence-Data-START## Transcript exon combination :: AK348225.1, AK236564.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA1487420, SAMEA1876824 [ECO:0000348] ##Evidence-Data-END## |
1 | ATGTCCGGGT CCGACTCCAC GCCCTTCCTC AGCCAGGCGG ATGACACGGA TGACGGACCG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001229949.1 |
CDS | 381..1967 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001243020.1 |
1 | ATGTCCGGGT CCGACTCCAC GCCCTTCCTC AGCCAGGCGG ATGACACGGA TGACGGACCG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OSe06700 | |
Clone ID Related Accession (Same CDS sequence) | XM_005662042.2 | |
Accession Version | XM_005662042.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1584bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2015-09-10 | |
Organism | Sus scrofa(Pig) | |
Product | protein spinster homolog 1 isoform X1 | |
Comment | MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003609765.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Sep 11, 2015 this sequence version replaced XM_005662042.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Sus scrofa Annotation Release 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGTATGAAG CCCCAAACGG ACACAGAAGC CAGGCGGATG ACACGGATGA CGGACCGGCG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_005662099.1 |
CDS | 163..1746 |
Translation |
Target ORF information:
Target ORF information:
|
XM_005662042.2 |
1 | ATGTATGAAG CCCCAAACGG ACACAGAAGC CAGGCGGATG ACACGGATGA CGGACCGGCG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OSe06701 | |
Clone ID Related Accession (Same CDS sequence) | XM_005662045.2 , XM_005662044.2 , XM_005662046.2 , XM_005662043.2 | |
Accession Version | XM_005662045.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1497bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2015-09-10 | |
Organism | Sus scrofa(Pig) | |
Product | protein spinster homolog 1 isoform X2 | |
Comment | MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003609765.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Sep 11, 2015 this sequence version replaced XM_005662045.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Sus scrofa Annotation Release 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGGGAACC CGAAGTCCGA GGATCCCGAG GTCCTGGACC GGGAGGGACT GCAGCGCATC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_005662102.1 |
CDS | 104..1600 |
Translation |
Target ORF information:
Target ORF information:
|
XM_005662045.2 |
1 | ATGGGGAACC CGAAGTCCGA GGATCCCGAG GTCCTGGACC GGGAGGGACT GCAGCGCATC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OSe06701 | |
Clone ID Related Accession (Same CDS sequence) | XM_005662045.2 , XM_005662044.2 , XM_005662046.2 , XM_005662043.2 | |
Accession Version | XM_005662044.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1497bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2015-09-10 | |
Organism | Sus scrofa(Pig) | |
Product | protein spinster homolog 1 isoform X2 | |
Comment | MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003609765.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Sep 11, 2015 this sequence version replaced XM_005662044.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Sus scrofa Annotation Release 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGGGAACC CGAAGTCCGA GGATCCCGAG GTCCTGGACC GGGAGGGACT GCAGCGCATC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_005662101.1 |
CDS | 237..1733 |
Translation |
Target ORF information:
Target ORF information:
|
XM_005662044.2 |
1 | ATGGGGAACC CGAAGTCCGA GGATCCCGAG GTCCTGGACC GGGAGGGACT GCAGCGCATC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OSe06701 | |
Clone ID Related Accession (Same CDS sequence) | XM_005662045.2 , XM_005662044.2 , XM_005662046.2 , XM_005662043.2 | |
Accession Version | XM_005662046.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1497bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2015-09-10 | |
Organism | Sus scrofa(Pig) | |
Product | protein spinster homolog 1 isoform X2 | |
Comment | MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003609765.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Sep 11, 2015 this sequence version replaced XM_005662046.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Sus scrofa Annotation Release 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGGGAACC CGAAGTCCGA GGATCCCGAG GTCCTGGACC GGGAGGGACT GCAGCGCATC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_005662103.1 |
CDS | 96..1592 |
Translation |
Target ORF information:
Target ORF information:
|
XM_005662046.2 |
1 | ATGGGGAACC CGAAGTCCGA GGATCCCGAG GTCCTGGACC GGGAGGGACT GCAGCGCATC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OSe06701 | |
Clone ID Related Accession (Same CDS sequence) | XM_005662045.2 , XM_005662044.2 , XM_005662046.2 , XM_005662043.2 | |
Accession Version | XM_005662043.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1497bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2015-09-10 | |
Organism | Sus scrofa(Pig) | |
Product | protein spinster homolog 1 isoform X2 | |
Comment | MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003609765.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Sep 11, 2015 this sequence version replaced XM_005662043.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Sus scrofa Annotation Release 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGGGAACC CGAAGTCCGA GGATCCCGAG GTCCTGGACC GGGAGGGACT GCAGCGCATC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_005662100.1 |
CDS | 241..1737 |
Translation |
Target ORF information:
Target ORF information:
|
XM_005662043.2 |
1 | ATGGGGAACC CGAAGTCCGA GGATCCCGAG GTCCTGGACC GGGAGGGACT GCAGCGCATC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OSe33719 | |
Clone ID Related Accession (Same CDS sequence) | XM_013995588.1 | |
Accession Version | XM_013995588.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1488bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2015-09-10 | |
Organism | Sus scrofa(Pig) | |
Product | protein spinster homolog 1 isoform X3 | |
Comment | MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003609765.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Sus scrofa Annotation Release 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGTCCGGGT CCGACTCCAC GCCCTTCCTC AGCCAGGCGG ATGACACGGA TGACGGACCG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_013851042.1 |
CDS | 436..1923 |
Translation |
Target ORF information:
Target ORF information:
|
XM_013995588.1 |
1 | ATGTCCGGGT CCGACTCCAC GCCCTTCCTC AGCCAGGCGG ATGACACGGA TGACGGACCG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. |
PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. |