Hoxa5 cDNA ORF clone, Rattus norvegicus(Norway rat)

Gene
Clones
gRNAs

Summary

Gene Symbol	Hoxa5
Entrez Gene ID	79241
Full Name	homeo box A5
General protein information	Preferred Names homeo box A5 Names homeobox protein Hox-A5 homeobox protein Hox-1.3 homeobox protein Hox-A5-like hox-1.3
Gene Type	protein-coding
Organism	Rattus norvegicus(Norway rat)
Genome	Chromosome: 4 Map Location: 4q24

mRNA and Protein(s)

mRNA	Protein	Name
NM_024389.1	NP_077365.1	homeobox protein Hox-A5
XM_003752180.2	XP_003752228.2	homeobox protein Hox-A5

Pathways from BioSystems

Homologies

Rattus norvegicus (Norway rat)	Hoxa5	XP_003749797.2
Rattus norvegicus (Norway rat)	LOC100909641	XP_003749803.2
Bos taurus (cattle)	HOXA5	NP_001070566.1
Rattus norvegicus (Norway rat)	LOC100911546	XP_003752228.2
Danio rerio (zebrafish)	hoxa5a	NP_571615.1
Xenopus tropicalis (tropical clawed frog)	hoxa5	NP_001011405.1
Homo sapiens (human)	HOXA5	NP_061975.2
Mus musculus (house mouse)	Hoxa5	NP_034583.1
Gallus gallus (chicken)	LOC100858834	XP_003640753.1
Gallus gallus (chicken)	LOC100857257	XP_003640770.1
Pan troglodytes (chimpanzee)	HOXA5	XP_519011.2
Canis lupus familiaris (dog)	HOXA5	XP_005628714.1
	HOXA5	XP_001092687.2
Gallus gallus (chicken)	HOXA5	XP_003640747.1

Gene Ontology
Bibliography

Related articles in PubMed

MicroRNA-130a regulates cerebral ischemia-induced blood-brain barrier permeability by targeting Homeobox A5.
Wang Y, Wang MD, Xia YP, Gao Y, Zhu YY, Chen SC, Mao L, He QW, Yue ZY, Hu B
FASEB journal : official publication of the Federation of American Societies for Experimental Biology(2017 Oct)

Loss of angiomiR-126 and 130a in angiogenic early outgrowth cells from patients with chronic heart failure: role for impaired in vivo neovascularization and cardiac repair capacity.
Jakob P, Doerries C, Briand S, Mocharla P, Kr?nkel N, Besler C, Mueller M, Manes C, Templin C, Baltes C, Rudin M, Adams H, Wolfrum M, Noll G, Ruschitzka F, L?scher TF, Landmesser U
Circulation126(25)2962-75(2012 Dec)

Regulation of angiogenesis through a microRNA (miR-130a) that down-regulates antiangiogenic homeobox genes GAX and HOXA5.
Chen Y, Gorski DH
Blood111(3)1217-26(2008 Feb)

Hox patterning of the vertebrate rib cage.
McIntyre DC, Rakshit S, Yallowitz AR, Loken L, Jeannotte L, Capecchi MR, Wellik DM
Development (Cambridge, England)134(16)2981-9(2007 Aug)

Comparative analysis of Hoxa5 allelic series.
Tabari?s S, Lemieux M, Aubin J, Jeannotte L
Genesis (New York, N.Y. : 2000)45(4)218-28(2007 Apr)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following Hoxa5 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the Hoxa5 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)	Select
ORa16212	NM_024389.1 Latest version!	Rattus norvegicus homeo box A5 (Hoxa5), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	9-11	$223.30 $319.00
ORa16212	XM_003752180.2 Latest version!	Rattus norvegicus homeo box A5 (Hoxa5), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	TBD	$223.30 $319.00

ORF Online Only Promotion

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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

Hoxa5 ( NM_024389.1 ) cDNA ORF clone, Rattus norvegicus(Norway rat) -> NP_077365.1 Rattus norvegicus homeo box A5 (Hoxa5), mRNA.

Price & Availability↑

CloneID	ORa16212
Clone ID Related Accession (Same CDS sequence)	NM_024389.1 , XM_003752180.2
Accession Version	NM_024389.1 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 1146bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2019-10-24
Organism	Rattus norvegicus(Norway rat)
Product	homeobox protein Hox-A5
Comment	Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AAHX01030192.1. On Oct 25, 2019 this sequence version replaced XM_003752180.2. Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications. ##Evidence-Data-START## Transcript exon combination :: BU758364.1, BQ782052.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA2689597, SAMEA2689598 [ECO:0000348] ##Evidence-Data-END##

ATGCGCCCAG TCTCCAGCGG GTGGCGCTCG AGTCCGACTG AACGGCGGCG GCGGGTGGCG 
GGCACGCGCC CAGGGAGCGC GCGCCACCCC TCTCGCCTCC ACCCAACTCC CCCATTACTG 
CACGAGTTTA CCTCTAGAGG TCATCAGGCA GGATTTACGA CTGGACAACA AAAGCACGTG 
ATTCGAAGTC GTACCCCATA TTTGGGTGCC TACGTAGGAG GGAACCGAGT ACATGTCCCA 
GTCATTTCCA TAATTCATCA TAAATTGTGC AAGGGTGCTA TAGACGCACA AACGACCGCG 
AGCCACAAAT CAAGCACACA TATCAAAAAA CAAATGAGCT CTTATTTTGT AAACTCATTT 
TGCGGTCGCT ATCCAAATGG CCCGGACTAC CAGTTGCATA ATTATGGAGA TCATAGTTCC 
GTGAGCGAAC AATTCAGGGA CTCGGCGAGC ATGCACTCCG GCAGGTACGG CTACGGCTAC 
AATGGCATGG ATCTCAGCGT CGGCCGTTCG GGTTCCGGCC ACTTTGGCTC CGGCGAGCGC 
GCCCGCAGCT ACGCGGCTGG GGCCAGTGCG GCGCCCGCCG AGCCCAGGTA CAGCCAGCCG 
GCCACGTCCA CGCACTCGCC ACCGCCCGAC CCGCTGCCCT GCTCAGCGGT GGCCCCCTCG 
CCCGGCAGCG ACAGCCACCA CGGCGGGAAA AACTCCCTGG GCAACTCCAG CGGCGCCTCG 
GCCAACGCCG GCAGCACCCA CATCAGCAGC AGAGAGGGGG TTGGCACGGC GTCCGCAGCG 
GAGGAGGACG CCCCTGCCAG CAGCGAGCAG GCGGGCGCCC AGAGCGAGCC GAGCCCGGCG 
CCGCCCGCTC AACCCCAGAT CTACCCCTGG ATGCGCAAGC TGCACATTAG TCACGACAAC 
ATAGGTGGCC CAGAAGGCAA AAGGGCCCGG ACGGCCTACA CGCGCTACCA GACCCTGGAG 
CTGGAGAAAG AATTCCACTT CAACCGCTAC CTGACCCGCC GAAGAAGGAT TGAAATAGCA 
CATGCCCTTT GCCTCTCCGA GAGACAAATT AAAATCTGGT TCCAAAACAG GAGGATGAAG 
TGGAAAAAGG ATAATAAGCT GAAAAGTATG AGTATGGCCG CGGCAGGGGG GGCCTTCCGC 
CCCTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_077365.1
CDS	1492..2637
Translation	MRPVSSGWRSSPTERRRRVAGTRPGSARHPSRLHPTPPLLHEFTSRGHQAGFTTGQQKHVIRSRTPYLGAYVGGNRVHVPVISIIHHKLCKGAIDAQTTASHKSSTHIKKQMSSYFVNSFCGRYPNGPDYQLHNYGDHSSVSEQFRDSASMHSGRYGYGYNGMDLSVGRSGSGHFGSGERARSYAAGASAAPAEPRYSQPATSTHSPPPDPLPCSAVAPSPGSDSHHGGKNSLGNSSGASANAGSTHISSREGVGTASAAEEDAPASSEQAGAQSEPSPAPPAQPQIYPWMRKLHISHDNIGGPEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNKLKSMSMAAAGGAFRP

Target ORF information:

RefSeq Version	NM_024389.1
Organism	Rattus norvegicus(Norway rat)
Definition	Rattus norvegicus homeo box A5 (Hoxa5), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_024389.1

ORF Insert Sequence:

ATGCGCCCAG TCTCCAGCGG GTGGCGCTCG AGTCCGACTG AACGGCGGCG GCGGGTGGCG 
GGCACGCGCC CAGGGAGCGC GCGCCACCCC TCTCGCCTCC ACCCAACTCC CCCATTACTG 
CACGAGTTTA CCTCTAGAGG TCATCAGGCA GGATTTACGA CTGGACAACA AAAGCACGTG 
ATTCGAAGTC GTACCCCATA TTTGGGTGCC TACGTAGGAG GGAACCGAGT ACATGTCCCA 
GTCATTTCCA TAATTCATCA TAAATTGTGC AAGGGTGCTA TAGACGCACA AACGACCGCG 
AGCCACAAAT CAAGCACACA TATCAAAAAA CAAATGAGCT CTTATTTTGT AAACTCATTT 
TGCGGTCGCT ATCCAAATGG CCCGGACTAC CAGTTGCATA ATTATGGAGA TCATAGTTCC 
GTGAGCGAAC AATTCAGGGA CTCGGCGAGC ATGCACTCCG GCAGGTACGG CTACGGCTAC 
AATGGCATGG ATCTCAGCGT CGGCCGTTCG GGTTCCGGCC ACTTTGGCTC CGGCGAGCGC 
GCCCGCAGCT ACGCGGCTGG GGCCAGTGCG GCGCCCGCCG AGCCCAGGTA CAGCCAGCCG 
GCCACGTCCA CGCACTCGCC ACCGCCCGAC CCGCTGCCCT GCTCAGCGGT GGCCCCCTCG 
CCCGGCAGCG ACAGCCACCA CGGCGGGAAA AACTCCCTGG GCAACTCCAG CGGCGCCTCG 
GCCAACGCCG GCAGCACCCA CATCAGCAGC AGAGAGGGGG TTGGCACGGC GTCCGCAGCG 
GAGGAGGACG CCCCTGCCAG CAGCGAGCAG GCGGGCGCCC AGAGCGAGCC GAGCCCGGCG 
CCGCCCGCTC AACCCCAGAT CTACCCCTGG ATGCGCAAGC TGCACATTAG TCACGACAAC 
ATAGGTGGCC CAGAAGGCAA AAGGGCCCGG ACGGCCTACA CGCGCTACCA GACCCTGGAG 
CTGGAGAAAG AATTCCACTT CAACCGCTAC CTGACCCGCC GAAGAAGGAT TGAAATAGCA 
CATGCCCTTT GCCTCTCCGA GAGACAAATT AAAATCTGGT TCCAAAACAG GAGGATGAAG 
TGGAAAAAGG ATAATAAGCT GAAAAGTATG AGTATGGCCG CGGCAGGGGG GGCCTTCCGC 
CCCTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

Hoxa5 ( XM_003752180.2 ) cDNA ORF clone, Rattus norvegicus(Norway rat) -> XP_003752228.2 Rattus norvegicus homeo box A5 (Hoxa5), mRNA.

Price & Availability↑

CloneID	ORa16212
Clone ID Related Accession (Same CDS sequence)	NM_024389.1 , XM_003752180.2
Accession Version	XM_003752180.2 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 1146bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2016-07-25
Organism	Rattus norvegicus(Norway rat)
Product	homeobox protein Hox-A5
Comment	Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_007906169.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2013 this sequence version replaced XM_003752180.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Rattus norvegicus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END##

ATGCGCCCAG TCTCCAGCGG GTGGCGCTCG AGTCCGACTG AACGGCGGCG GCGGGTGGCG 
GGCACGCGCC CAGGGAGCGC GCGCCACCCC TCTCGCCTCC ACCCAACTCC CCCATTACTG 
CACGAGTTTA CCTCTAGAGG TCATCAGGCA GGATTTACGA CTGGACAACA AAAGCACGTG 
ATTCGAAGTC GTACCCCATA TTTGGGTGCC TACGTAGGAG GGAACCGAGT ACATGTCCCA 
GTCATTTCCA TAATTCATCA TAAATTGTGC AAGGGTGCTA TAGACGCACA AACGACCGCG 
AGCCACAAAT CAAGCACACA TATCAAAAAA CAAATGAGCT CTTATTTTGT AAACTCATTT 
TGCGGTCGCT ATCCAAATGG CCCGGACTAC CAGTTGCATA ATTATGGAGA TCATAGTTCC 
GTGAGCGAAC AATTCAGGGA CTCGGCGAGC ATGCACTCCG GCAGGTACGG CTACGGCTAC 
AATGGCATGG ATCTCAGCGT CGGCCGTTCG GGTTCCGGCC ACTTTGGCTC CGGCGAGCGC 
GCCCGCAGCT ACGCGGCTGG GGCCAGTGCG GCGCCCGCCG AGCCCAGGTA CAGCCAGCCG 
GCCACGTCCA CGCACTCGCC ACCGCCCGAC CCGCTGCCCT GCTCAGCGGT GGCCCCCTCG 
CCCGGCAGCG ACAGCCACCA CGGCGGGAAA AACTCCCTGG GCAACTCCAG CGGCGCCTCG 
GCCAACGCCG GCAGCACCCA CATCAGCAGC AGAGAGGGGG TTGGCACGGC GTCCGCAGCG 
GAGGAGGACG CCCCTGCCAG CAGCGAGCAG GCGGGCGCCC AGAGCGAGCC GAGCCCGGCG 
CCGCCCGCTC AACCCCAGAT CTACCCCTGG ATGCGCAAGC TGCACATTAG TCACGACAAC 
ATAGGTGGCC CAGAAGGCAA AAGGGCCCGG ACGGCCTACA CGCGCTACCA GACCCTGGAG 
CTGGAGAAAG AATTCCACTT CAACCGCTAC CTGACCCGCC GAAGAAGGAT TGAAATAGCA 
CATGCCCTTT GCCTCTCCGA GAGACAAATT AAAATCTGGT TCCAAAACAG GAGGATGAAG 
TGGAAAAAGG ATAATAAGCT GAAAAGTATG AGTATGGCCG CGGCAGGGGG GGCCTTCCGC 
CCCTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	XP_003752228.2
CDS	1486..2631
Translation	MRPVSSGWRSSPTERRRRVAGTRPGSARHPSRLHPTPPLLHEFTSRGHQAGFTTGQQKHVIRSRTPYLGAYVGGNRVHVPVISIIHHKLCKGAIDAQTTASHKSSTHIKKQMSSYFVNSFCGRYPNGPDYQLHNYGDHSSVSEQFRDSASMHSGRYGYGYNGMDLSVGRSGSGHFGSGERARSYAAGASAAPAEPRYSQPATSTHSPPPDPLPCSAVAPSPGSDSHHGGKNSLGNSSGASANAGSTHISSREGVGTASAAEEDAPASSEQAGAQSEPSPAPPAQPQIYPWMRKLHISHDNIGGPEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNKLKSMSMAAAGGAFRP

Target ORF information:

RefSeq Version	XM_003752180.2
Organism	Rattus norvegicus(Norway rat)
Definition	Rattus norvegicus homeo box A5 (Hoxa5), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

XM_003752180.2

ORF Insert Sequence:

ATGCGCCCAG TCTCCAGCGG GTGGCGCTCG AGTCCGACTG AACGGCGGCG GCGGGTGGCG 
GGCACGCGCC CAGGGAGCGC GCGCCACCCC TCTCGCCTCC ACCCAACTCC CCCATTACTG 
CACGAGTTTA CCTCTAGAGG TCATCAGGCA GGATTTACGA CTGGACAACA AAAGCACGTG 
ATTCGAAGTC GTACCCCATA TTTGGGTGCC TACGTAGGAG GGAACCGAGT ACATGTCCCA 
GTCATTTCCA TAATTCATCA TAAATTGTGC AAGGGTGCTA TAGACGCACA AACGACCGCG 
AGCCACAAAT CAAGCACACA TATCAAAAAA CAAATGAGCT CTTATTTTGT AAACTCATTT 
TGCGGTCGCT ATCCAAATGG CCCGGACTAC CAGTTGCATA ATTATGGAGA TCATAGTTCC 
GTGAGCGAAC AATTCAGGGA CTCGGCGAGC ATGCACTCCG GCAGGTACGG CTACGGCTAC 
AATGGCATGG ATCTCAGCGT CGGCCGTTCG GGTTCCGGCC ACTTTGGCTC CGGCGAGCGC 
GCCCGCAGCT ACGCGGCTGG GGCCAGTGCG GCGCCCGCCG AGCCCAGGTA CAGCCAGCCG 
GCCACGTCCA CGCACTCGCC ACCGCCCGAC CCGCTGCCCT GCTCAGCGGT GGCCCCCTCG 
CCCGGCAGCG ACAGCCACCA CGGCGGGAAA AACTCCCTGG GCAACTCCAG CGGCGCCTCG 
GCCAACGCCG GCAGCACCCA CATCAGCAGC AGAGAGGGGG TTGGCACGGC GTCCGCAGCG 
GAGGAGGACG CCCCTGCCAG CAGCGAGCAG GCGGGCGCCC AGAGCGAGCC GAGCCCGGCG 
CCGCCCGCTC AACCCCAGAT CTACCCCTGG ATGCGCAAGC TGCACATTAG TCACGACAAC 
ATAGGTGGCC CAGAAGGCAA AAGGGCCCGG ACGGCCTACA CGCGCTACCA GACCCTGGAG 
CTGGAGAAAG AATTCCACTT CAACCGCTAC CTGACCCGCC GAAGAAGGAT TGAAATAGCA 
CATGCCCTTT GCCTCTCCGA GAGACAAATT AAAATCTGGT TCCAAAACAG GAGGATGAAG 
TGGAAAAAGG ATAATAAGCT GAAAAGTATG AGTATGGCCG CGGCAGGGGG GGCCTTCCGC 
CCCTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PubMed

MicroRNA-130a regulates cerebral ischemia-induced blood-brain barrier permeability by targeting Homeobox A5.
FASEB journal : official publication of the Federation of American Societies for Experimental Biology(2017 Oct)
Wang Y,Wang MD,Xia YP,Gao Y,Zhu YY,Chen SC,Mao L,He QW,Yue ZY,Hu B

Loss of angiomiR-126 and 130a in angiogenic early outgrowth cells from patients with chronic heart failure: role for impaired in vivo neovascularization and cardiac repair capacity.
Circulation126(25)2962-75(2012 Dec)
Jakob P,Doerries C,Briand S,Mocharla P,Kr?nkel N,Besler C,Mueller M,Manes C,Templin C,Baltes C,Rudin M,Adams H,Wolfrum M,Noll G,Ruschitzka F,L?scher TF,Landmesser U

Regulation of angiogenesis through a microRNA (miR-130a) that down-regulates antiangiogenic homeobox genes GAX and HOXA5.
Blood111(3)1217-26(2008 Feb)
Chen Y,Gorski DH

Hox patterning of the vertebrate rib cage.
Development (Cambridge, England)134(16)2981-9(2007 Aug)
McIntyre DC,Rakshit S,Yallowitz AR,Loken L,Jeannotte L,Capecchi MR,Wellik DM

Comparative analysis of Hoxa5 allelic series.
Genesis (New York, N.Y. : 2000)45(4)218-28(2007 Apr)
Tabari?s S,Lemieux M,Aubin J,Jeannotte L

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Hoxa5 cDNA ORF clone, Rattus norvegicus(Norway rat)

Gene

Clones

gRNAs

Related articles in PubMed

Target ORF information:

Target ORF information:

ORF Insert Sequence:

Target ORF information:

Target ORF information:

ORF Insert Sequence:

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