Gene Symbol | PATR-C |
Entrez Gene ID | 471962 |
Full Name | major histocompatibility complex, class I, C |
Synonyms | CHLA-C,PATR-C03 |
Gene Type | protein-coding |
Organism | Pan troglodytes(Chimpanzee) |
ORF » Species Summary » Pan troglodytes » PATR-C cDNA ORF clone
Gene Symbol | PATR-C |
Entrez Gene ID | 471962 |
Full Name | major histocompatibility complex, class I, C |
Synonyms | CHLA-C,PATR-C03 |
Gene Type | protein-coding |
Organism | Pan troglodytes(Chimpanzee) |
mRNA | Protein | Name |
---|---|---|
XM_024356976.1 | XP_024212744.1 | patr class I histocompatibility antigen, C alpha chain isoform X1 |
XM_024356977.1 | XP_024212745.1 | patr class I histocompatibility antigen, C alpha chain isoform X1 |
XM_024356978.1 | XP_024212746.1 | patr class I histocompatibility antigen, C alpha chain isoform X1 |
XM_016954720.1 | XP_016810209.1 | patr class I histocompatibility antigen, C alpha chain isoform X2 |
NM_001012439.3 | NP_001012441.3 | patr class I histocompatibility antigen, C alpha chain precursor |
NM_001012439.2 | NP_001012441.2 | patr class I histocompatibility antigen, C alpha chain precursor |
Evidence for an ancient selective sweep in the MHC class I gene repertoire of chimpanzees.
de Groot NG, Otting N, Doxiadis GG, Balla-Jhagjhoorsingh SS, Heeney JL, van Rood JJ, Gagneux P, Bontrop RE
Proceedings of the National Academy of Sciences of the United States of America99(18)11748-53(2002 Sep)
New chimpanzee MHC class I alleles cloned by polymerase chain reaction.
MacHida S, Matsui M, Tanoue T, Hayasaka I, Akatsuka T
European journal of immunogenetics : official journal of the British Society for Histocompatibility and Immunogenetics28(3)435-8(2001 Jun)
Major histocompatibility complex class I diversity in a West African chimpanzee population: implications for HIV research.
de Groot NG, Otting N, Arg?ello R, Watkins DI, Doxiadis GG, Madrigal JA, Bontrop RE
Immunogenetics51(6)398-409(2000 May)
Common chimpanzees have greater diversity than humans at two of the three highly polymorphic MHC class I genes.
Adams EJ, Cooper S, Thomson G, Parham P
Immunogenetics51(6)410-24(2000 May)
Molecular analyses of five new chimpanzee MHC class I alleles: implications for differences between evolutional mechanisms of HLA-A, -B, and -C loci.
Matsui M, Machida S, Feinstone SM, Akatsuka T
Biochemical and biophysical research communications261(1)46-52(1999 Jul)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following PATR-C gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the PATR-C cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | OPc00342 | |
Clone ID Related Accession (Same CDS sequence) | NM_001012439.2 | |
Accession Version | NM_001012439.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1101bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2014-10-11 | |
Organism | Pan troglodytes(Chimpanzee) | |
Product | patr class I histocompatibility antigen, C alpha chain precursor | |
Comment | PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AACZ03049261.1 and AACZ03049260.1. On Sep 25, 2012 this sequence version replaced NM_001012439.1. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments. ##Evidence-Data-START## Transcript exon combination :: D11383.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00632217, SAMN02045701 [ECO:0000348] ##Evidence-Data-END## |
1 | ATGCGGGTCA TGGCGCCCCG AACCCTCATC CTGCTGCTCT CGGGAGCCCT GGCCCTGACC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001012441.2 |
CDS | 49..1149 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001012439.2 |
1 | ATGCGGGTCA TGGCGCCCCG AACCCTCATC CTGCTGCTCT CGGGAGCCCT GGCCCTGACC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OPc91397 | |
Clone ID Related Accession (Same CDS sequence) | XM_024356976.1 , XM_024356977.1 , XM_024356978.1 , NM_001012439.3 | |
Accession Version | NM_001012439.3 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1101bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-11-16 | |
Organism | Pan troglodytes(chimpanzee) | |
Product | patr class I histocompatibility antigen, C alpha chain precursor | |
Comment | Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from NBAG03000221.1. On Jun 30, 2017 this sequence version replaced NM_001012439.2. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments. ##Evidence-Data-START## Transcript exon combination :: D11383.1, SRR6713217.9630.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN02045701, SAMN03734999 [ECO:0000348] ##Evidence-Data-END## |
1 | ATGCGGGTCA TGGCGCCCCG AACCCTCATC CTGCTGCTCT CGGGAGCCCT GGCCCTGACC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001012441.3 |
CDS | 49..1149 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001012439.3 |
1 | ATGCGGGTCA TGGCGCCCCG AACCCTCATC CTGCTGCTCT CGGGAGCCCT GGCCCTGACC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OPc85946 | |
Clone ID Related Accession (Same CDS sequence) | XM_016954720.1 | |
Accession Version | XM_016954720.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1197bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2018-03-19 | |
Organism | Pan troglodytes(chimpanzee) | |
Product | patr class I histocompatibility antigen, C alpha chain isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_036885.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Pan troglodytes Annotation Release 105 Annotation Version :: 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGCGGGTCA TGGCGCCCCG AACCCTCATC CTGCTGCTCT CGGGAGCCCT GGCCCTGACC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_016810209.1 |
CDS | 90..1286 |
Translation |
Target ORF information:
Target ORF information:
|
XM_016954720.1 |
1 | ATGCGGGTCA TGGCGCCCCG AACCCTCATC CTGCTGCTCT CGGGAGCCCT GGCCCTGACC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OPc91397 | |
Clone ID Related Accession (Same CDS sequence) | XM_024356976.1 , XM_024356977.1 , XM_024356978.1 , NM_001012439.3 | |
Accession Version | XM_024356976.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1101bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2018-03-19 | |
Organism | Pan troglodytes(chimpanzee) | |
Product | patr class I histocompatibility antigen, C alpha chain isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_036885.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Pan troglodytes Annotation Release 105 Annotation Version :: 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGCGGGTCA TGGCGCCCCG AACCCTCATC CTGCTGCTCT CGGGAGCCCT GGCCCTGACC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_024212744.1 |
CDS | 406..1506 |
Translation |
Target ORF information:
Target ORF information:
|
XM_024356976.1 |
1 | ATGCGGGTCA TGGCGCCCCG AACCCTCATC CTGCTGCTCT CGGGAGCCCT GGCCCTGACC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OPc91397 | |
Clone ID Related Accession (Same CDS sequence) | XM_024356976.1 , XM_024356977.1 , XM_024356978.1 , NM_001012439.3 | |
Accession Version | XM_024356977.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1101bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2018-03-19 | |
Organism | Pan troglodytes(chimpanzee) | |
Product | patr class I histocompatibility antigen, C alpha chain isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_036885.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Pan troglodytes Annotation Release 105 Annotation Version :: 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGCGGGTCA TGGCGCCCCG AACCCTCATC CTGCTGCTCT CGGGAGCCCT GGCCCTGACC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_024212745.1 |
CDS | 372..1472 |
Translation |
Target ORF information:
Target ORF information:
|
XM_024356977.1 |
1 | ATGCGGGTCA TGGCGCCCCG AACCCTCATC CTGCTGCTCT CGGGAGCCCT GGCCCTGACC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OPc91397 | |
Clone ID Related Accession (Same CDS sequence) | XM_024356976.1 , XM_024356977.1 , XM_024356978.1 , NM_001012439.3 | |
Accession Version | XM_024356978.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1101bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2018-03-19 | |
Organism | Pan troglodytes(chimpanzee) | |
Product | patr class I histocompatibility antigen, C alpha chain isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_036885.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Pan troglodytes Annotation Release 105 Annotation Version :: 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGCGGGTCA TGGCGCCCCG AACCCTCATC CTGCTGCTCT CGGGAGCCCT GGCCCTGACC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_024212746.1 |
CDS | 298..1398 |
Translation |
Target ORF information:
Target ORF information:
|
XM_024356978.1 |
1 | ATGCGGGTCA TGGCGCCCCG AACCCTCATC CTGCTGCTCT CGGGAGCCCT GGCCCTGACC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
Evidence for an ancient selective sweep in the MHC class I gene repertoire of chimpanzees. |
New chimpanzee MHC class I alleles cloned by polymerase chain reaction. |
Major histocompatibility complex class I diversity in a West African chimpanzee population: implications for HIV research. |
Common chimpanzees have greater diversity than humans at two of the three highly polymorphic MHC class I genes. |
Molecular analyses of five new chimpanzee MHC class I alleles: implications for differences between evolutional mechanisms of HLA-A, -B, and -C loci. |