LOC101961309 cDNA ORF clone, Ictidomys tridecemlineatus(thirteen-lined ground squirrel)

Gene
Clones
gRNAs

Summary

Gene Symbol	LOC101961309
Entrez Gene ID	101961309
Full Name	HLA class II histocompatibility antigen, DO beta chain
Gene Type	protein-coding
Organism	Ictidomys tridecemlineatus(thirteen-lined ground squirrel)

mRNA and Protein(s)

mRNA	Protein	Name
XM_005318844.1	XP_005318901.1	HLA class II histocompatibility antigen, DO beta chain
XM_005318844.2	XP_005318901.1	HLA class II histocompatibility antigen, DO beta chain

Pathways from BioSystems
Gene Ontology

The following LOC101961309 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the LOC101961309 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)
OIc49912	XM_005318844.2 Latest version!	Ictidomys tridecemlineatus HLA class II histocompatibility antigen, DO beta chain (LOC101961309), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	9-11	$174.30 $249.00
View Old Accession Versions >>
OIc49912	XM_005318844.1	Ictidomys tridecemlineatus HLA class II histocompatibility antigen, DO beta chain (LOC101961309), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	9-11	$174.30 $249.00
Hide Old Accession Versions >>

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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

LOC101961309 ( XM_005318844.1 ) cDNA ORF clone, Ictidomys tridecemlineatus(thirteen-lined ground squirrel) -> XP_005318901.1 Ictidomys tridecemlineatus HLA class II histocompatibility antigen, DO beta chain (LOC101961309), mRNA.

Price & Availability↑

CloneID	OIc49912
Clone ID Related Accession (Same CDS sequence)	XM_005318844.1 , XM_005318844.2
Accession Version	XM_005318844.1	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 849bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2015-08-11
Organism	Ictidomys tridecemlineatus(Thirteen-lined ground squirrel)
Product	HLA class II histocompatibility antigen, DO beta chain
Comment	MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_004936476.1) annotated using gene prediction method: Gnomon, supported by mRNA evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Ictidomys tridecemlineatus Annotation Release 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END##

ATGAGCTCTG CATGGGCCCC CTGGGTGACA GTTCTGCTAG TGAATCTGAT CAGGCTAAAT 
TTCTCCATGA CTCAAGACAG AGACTCTCCA GAAGATTTTG TGATTCAGGC AAAGGCTGAC 
TGTTACTTCA CCAATGGGAC AGAGAAGGTG CAGTTTGTGG TCAGATTCAT CTTCAACCTG 
GAGGAGTATG CACGTTTTGA CAGTGATCTC GGAGTGTTTG TGGCATTGAC AGAGCTGGGG 
CTGCCTGATG CTGAGCAGTG GAACAATCGG CCTGATATAC TGGAGAGGAG CAGGGCATCT 
GTGGACATGC TCTGTAGACA CAACTACAAT TTGGGGGCCC CCTTCACTGT GGGGAGAAAA 
GTGCAACCAG AGGTGACAGT GTACCCAGAG AAGACCCCAC TCCTGCATCA GCACAACCTG 
CTGCTCTGCT CTGTGACAGG CTTCTATCCA GGGGACATAA AGATCAGGTG GTTCTGGAAT 
GGACAGGAGG AGAGAGCTGG CGTTTTGTCC ACTGGTCTTA TCAGGAACGG AGACTGGACC 
TTTCAGACCA TGGTGATGCT GGAAGTGACT CCTTCACCTG GAGATGTTTA CAGCTGCCTT 
GTTGAGCACC CCAGTCTGCC TGGCCCTGTT TCTGTGGAGT GGAGAGCTCA GCGTGAATAT 
TCTTGGAAAA AGATACTCAG TGGAGTTGGA GCCTTCCTAC TTGGGCTAAC CTTCCTTCTG 
GTGGGGATCA TCATCCATCT CAGGGCTCGG AAAGGATCTG TGGAGACTCA GTCTGGTGAT 
AAGATCTCAA GAGCTATTCT ACAGAAGCCA AACTCAGGTC CTAATCAAAG CTTCTCTCCT 
GAAACCTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	XP_005318901.1
CDS	43..891
Translation	MSSAWAPWVTVLLVNLIRLNFSMTQDRDSPEDFVIQAKADCYFTNGTEKVQFVVRFIFNLEEYARFDSDLGVFVALTELGLPDAEQWNNRPDILERSRASVDMLCRHNYNLGAPFTVGRKVQPEVTVYPEKTPLLHQHNLLLCSVTGFYPGDIKIRWFWNGQEERAGVLSTGLIRNGDWTFQTMVMLEVTPSPGDVYSCLVEHPSLPGPVSVEWRAQREYSWKKILSGVGAFLLGLTFLLVGIIIHLRARKGSVETQSGDKISRAILQKPNSGPNQSFSPET

Target ORF information:

RefSeq Version	XM_005318844.1
Organism	Ictidomys tridecemlineatus(Thirteen-lined ground squirrel)
Definition	Ictidomys tridecemlineatus HLA class II histocompatibility antigen, DO beta chain (LOC101961309), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

XM_005318844.1

ORF Insert Sequence:

ATGAGCTCTG CATGGGCCCC CTGGGTGACA GTTCTGCTAG TGAATCTGAT CAGGCTAAAT 
TTCTCCATGA CTCAAGACAG AGACTCTCCA GAAGATTTTG TGATTCAGGC AAAGGCTGAC 
TGTTACTTCA CCAATGGGAC AGAGAAGGTG CAGTTTGTGG TCAGATTCAT CTTCAACCTG 
GAGGAGTATG CACGTTTTGA CAGTGATCTC GGAGTGTTTG TGGCATTGAC AGAGCTGGGG 
CTGCCTGATG CTGAGCAGTG GAACAATCGG CCTGATATAC TGGAGAGGAG CAGGGCATCT 
GTGGACATGC TCTGTAGACA CAACTACAAT TTGGGGGCCC CCTTCACTGT GGGGAGAAAA 
GTGCAACCAG AGGTGACAGT GTACCCAGAG AAGACCCCAC TCCTGCATCA GCACAACCTG 
CTGCTCTGCT CTGTGACAGG CTTCTATCCA GGGGACATAA AGATCAGGTG GTTCTGGAAT 
GGACAGGAGG AGAGAGCTGG CGTTTTGTCC ACTGGTCTTA TCAGGAACGG AGACTGGACC 
TTTCAGACCA TGGTGATGCT GGAAGTGACT CCTTCACCTG GAGATGTTTA CAGCTGCCTT 
GTTGAGCACC CCAGTCTGCC TGGCCCTGTT TCTGTGGAGT GGAGAGCTCA GCGTGAATAT 
TCTTGGAAAA AGATACTCAG TGGAGTTGGA GCCTTCCTAC TTGGGCTAAC CTTCCTTCTG 
GTGGGGATCA TCATCCATCT CAGGGCTCGG AAAGGATCTG TGGAGACTCA GTCTGGTGAT 
AAGATCTCAA GAGCTATTCT ACAGAAGCCA AACTCAGGTC CTAATCAAAG CTTCTCTCCT 
GAAACCTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

LOC101961309 ( XM_005318844.2 ) cDNA ORF clone, Ictidomys tridecemlineatus(thirteen-lined ground squirrel) -> XP_005318901.1 Ictidomys tridecemlineatus HLA class II histocompatibility antigen, DO beta chain (LOC101961309), mRNA.

Price & Availability↑

CloneID	OIc49912
Clone ID Related Accession (Same CDS sequence)	XM_005318844.1 , XM_005318844.2
Accession Version	XM_005318844.2 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 849bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2017-07-02
Organism	Ictidomys tridecemlineatus(thirteen-lined ground squirrel)
Product	HLA class II histocompatibility antigen, DO beta chain
Comment	Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_004936476.1) annotated using gene prediction method: Gnomon, supported by mRNA evidence. Also see: Documentation of NCBI's Annotation Process On Jul 3, 2017 this sequence version replaced XM_005318844.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Ictidomys tridecemlineatus Annotation Release 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END##

ATGAGCTCTG CATGGGCCCC CTGGGTGACA GTTCTGCTAG TGAATCTGAT CAGGCTAAAT 
TTCTCCATGA CTCAAGACAG AGACTCTCCA GAAGATTTTG TGATTCAGGC AAAGGCTGAC 
TGTTACTTCA CCAATGGGAC AGAGAAGGTG CAGTTTGTGG TCAGATTCAT CTTCAACCTG 
GAGGAGTATG CACGTTTTGA CAGTGATCTC GGAGTGTTTG TGGCATTGAC AGAGCTGGGG 
CTGCCTGATG CTGAGCAGTG GAACAATCGG CCTGATATAC TGGAGAGGAG CAGGGCATCT 
GTGGACATGC TCTGTAGACA CAACTACAAT TTGGGGGCCC CCTTCACTGT GGGGAGAAAA 
GTGCAACCAG AGGTGACAGT GTACCCAGAG AAGACCCCAC TCCTGCATCA GCACAACCTG 
CTGCTCTGCT CTGTGACAGG CTTCTATCCA GGGGACATAA AGATCAGGTG GTTCTGGAAT 
GGACAGGAGG AGAGAGCTGG CGTTTTGTCC ACTGGTCTTA TCAGGAACGG AGACTGGACC 
TTTCAGACCA TGGTGATGCT GGAAGTGACT CCTTCACCTG GAGATGTTTA CAGCTGCCTT 
GTTGAGCACC CCAGTCTGCC TGGCCCTGTT TCTGTGGAGT GGAGAGCTCA GCGTGAATAT 
TCTTGGAAAA AGATACTCAG TGGAGTTGGA GCCTTCCTAC TTGGGCTAAC CTTCCTTCTG 
GTGGGGATCA TCATCCATCT CAGGGCTCGG AAAGGATCTG TGGAGACTCA GTCTGGTGAT 
AAGATCTCAA GAGCTATTCT ACAGAAGCCA AACTCAGGTC CTAATCAAAG CTTCTCTCCT 
GAAACCTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	XP_005318901.1
CDS	43..891
Translation	MSSAWAPWVTVLLVNLIRLNFSMTQDRDSPEDFVIQAKADCYFTNGTEKVQFVVRFIFNLEEYARFDSDLGVFVALTELGLPDAEQWNNRPDILERSRASVDMLCRHNYNLGAPFTVGRKVQPEVTVYPEKTPLLHQHNLLLCSVTGFYPGDIKIRWFWNGQEERAGVLSTGLIRNGDWTFQTMVMLEVTPSPGDVYSCLVEHPSLPGPVSVEWRAQREYSWKKILSGVGAFLLGLTFLLVGIIIHLRARKGSVETQSGDKISRAILQKPNSGPNQSFSPET

Target ORF information:

RefSeq Version	XM_005318844.2
Organism	Ictidomys tridecemlineatus(thirteen-lined ground squirrel)
Definition	Ictidomys tridecemlineatus HLA class II histocompatibility antigen, DO beta chain (LOC101961309), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

XM_005318844.2

ORF Insert Sequence:

ATGAGCTCTG CATGGGCCCC CTGGGTGACA GTTCTGCTAG TGAATCTGAT CAGGCTAAAT 
TTCTCCATGA CTCAAGACAG AGACTCTCCA GAAGATTTTG TGATTCAGGC AAAGGCTGAC 
TGTTACTTCA CCAATGGGAC AGAGAAGGTG CAGTTTGTGG TCAGATTCAT CTTCAACCTG 
GAGGAGTATG CACGTTTTGA CAGTGATCTC GGAGTGTTTG TGGCATTGAC AGAGCTGGGG 
CTGCCTGATG CTGAGCAGTG GAACAATCGG CCTGATATAC TGGAGAGGAG CAGGGCATCT 
GTGGACATGC TCTGTAGACA CAACTACAAT TTGGGGGCCC CCTTCACTGT GGGGAGAAAA 
GTGCAACCAG AGGTGACAGT GTACCCAGAG AAGACCCCAC TCCTGCATCA GCACAACCTG 
CTGCTCTGCT CTGTGACAGG CTTCTATCCA GGGGACATAA AGATCAGGTG GTTCTGGAAT 
GGACAGGAGG AGAGAGCTGG CGTTTTGTCC ACTGGTCTTA TCAGGAACGG AGACTGGACC 
TTTCAGACCA TGGTGATGCT GGAAGTGACT CCTTCACCTG GAGATGTTTA CAGCTGCCTT 
GTTGAGCACC CCAGTCTGCC TGGCCCTGTT TCTGTGGAGT GGAGAGCTCA GCGTGAATAT 
TCTTGGAAAA AGATACTCAG TGGAGTTGGA GCCTTCCTAC TTGGGCTAAC CTTCCTTCTG 
GTGGGGATCA TCATCCATCT CAGGGCTCGG AAAGGATCTG TGGAGACTCA GTCTGGTGAT 
AAGATCTCAA GAGCTATTCT ACAGAAGCCA AACTCAGGTC CTAATCAAAG CTTCTCTCCT 
GAAACCTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.