CG42240 cDNA ORF clone, Drosophila melanogaster(fruit fly)

Gene
Clones
gRNAs

Summary

Gene Symbol	CG42240
Entrez Gene ID	7354471
Full Name	CG42240 gene product from transcript CG42240-RC
Synonyms	CG15893,Dmel\CG42240
Gene Type	protein-coding
Organism	Drosophila melanogaster(fruit fly)
Genome	Chromosome: X Map Location: 5F1-5F2

mRNA and Protein(s)

mRNA	Protein	Name
NM_001298013.1	NP_001284942.1	uncharacterized protein, isoform C
NM_001272340.2	NP_001259269.1	uncharacterized protein, isoform B
NM_001144692.2	NP_001138164.1	uncharacterized protein, isoform A

Pathways from BioSystems
Gene Ontology
Bibliography

Related articles in PubMed

Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data.
Matthews BB, Dos Santos G, Crosby MA, Emmert DB, St Pierre SE, Gramates LS, Zhou P, Schroeder AJ, Falls K, Strelets V, Russo SM, Gelbart WM,
G3 (Bethesda, Md.)5(8)1721-36(2015 Jun)

Gene Model Annotations for Drosophila melanogaster: The Rule-Benders.
Crosby MA, Gramates LS, Dos Santos G, Matthews BB, St Pierre SE, Zhou P, Schroeder AJ, Falls K, Emmert DB, Russo SM, Gelbart WM,
G3 (Bethesda, Md.)5(8)1737-49(2015 Jun)

Sequence finishing and mapping of Drosophila melanogaster heterochromatin.
Hoskins RA, Carlson JW, Kennedy C, Acevedo D, Evans-Holm M, Frise E, Wan KH, Park S, Mendez-Lago M, Rossi F, Villasante A, Dimitri P, Karpen GH, Celniker SE
Science (New York, N.Y.)316(5831)1625-8(2007 Jun)

The Release 5.1 annotation of Drosophila melanogaster heterochromatin.
Smith CD, Shu S, Mungall CJ, Karpen GH
Science (New York, N.Y.)316(5831)1586-91(2007 Jun)

Combined evidence annotation of transposable elements in genome sequences.
Quesneville H, Bergman CM, Andrieu O, Autard D, Nouaud D, Ashburner M, Anxolabehere D
PLoS computational biology1(2)166-75(2005 Jul)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following CG42240 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the CG42240 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)
OFa02650	NM_001298013.1 Latest version!	Drosophila melanogaster uncharacterized protein, transcript variant C (CG42240), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	7-9	$104.30 $149.00
OFa02650	NM_001144692.2 Latest version!	Drosophila melanogaster uncharacterized protein, transcript variant A (CG42240), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	7-9	$104.30 $149.00
OFa03015	NM_001272340.2 Latest version!	Drosophila melanogaster uncharacterized protein, transcript variant B (CG42240), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	7-9	$258.30 $369.00

ORF Online Only Promotion

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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

CG42240 ( NM_001298013.1 ) cDNA ORF clone, Drosophila melanogaster(fruit fly) -> NP_001284942.1 Drosophila melanogaster uncharacterized protein, transcript variant C (CG42240), mRNA.

Price & Availability↑

CloneID	OFa02650
Clone ID Related Accession (Same CDS sequence)	NM_001298013.1 , NM_001144692.2
Accession Version	NM_001298013.1 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 543bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2019-04-24
Organism	Drosophila melanogaster(fruit fly)
Product	uncharacterized protein, isoform C
Comment	Comment: REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.26 URL :: http://flybase.org ##Genome-Annotation-Data-END##

ATGGCGTTCA TGATGCCCGT GATGAAGAAC AATTACGATA TTTACAAGGA CACGCGTTCC 
CGCAAAACGT CAGAATGTTC GAATGCGAGT AGTAACGGTA CAACGGCTTT GGCCACCGCT 
CTTGGAACGC CCGCCCAGGG ACAACAACAA CAGCGACGCC GCAAGGTGTC CGAATGCAAG 
TCGGAGAGCT TCGCCACCTC ACCATCGCAC GGTCAACTGG GCGTGTCCTC CCCCCACCAA 
AGGATGCAAA TGCAGCGCTG CCACAGTTCG CGCGCTTTTC CACGCAACGC ATCGCGCAGT 
TCGCACGGTT CGCTGCAGCA AATGGTGTCG CCCACGCGCA GTAGTCCGCC CAGCCGCTCG 
CACACCGCAT CCGCACTGGA AAGGCAGGCG GCCGCCCAGG CAGCCGCGAT TAATCAAAAG 
CAACAACAGT CGGCCGCTGC AGCTGCTGCT GTTGAATCTT CAAATGATTA TACGAAGTTT 
CATTTGCGTT TGGTCGACAA GCTGCGCAAG TCCTTTCGCA AGGATAGCGG TAAGCGGTCA 
TGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_001284942.1
CDS	216..758
Translation	MAFMMPVMKNNYDIYKDTRSRKTSECSNASSNGTTALATALGTPAQGQQQQRRRKVSECKSESFATSPSHGQLGVSSPHQRMQMQRCHSSRAFPRNASRSSHGSLQQMVSPTRSSPPSRSHTASALERQAAAQAAAINQKQQQSAAAAAAVESSNDYTKFHLRLVDKLRKSFRKDSGKRS

Target ORF information:

RefSeq Version	NM_001298013.1
Organism	Drosophila melanogaster(fruit fly)
Definition	Drosophila melanogaster uncharacterized protein, transcript variant C (CG42240), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_001298013.1

ORF Insert Sequence:

ATGGCGTTCA TGATGCCCGT GATGAAGAAC AATTACGATA TTTACAAGGA CACGCGTTCC 
CGCAAAACGT CAGAATGTTC GAATGCGAGT AGTAACGGTA CAACGGCTTT GGCCACCGCT 
CTTGGAACGC CCGCCCAGGG ACAACAACAA CAGCGACGCC GCAAGGTGTC CGAATGCAAG 
TCGGAGAGCT TCGCCACCTC ACCATCGCAC GGTCAACTGG GCGTGTCCTC CCCCCACCAA 
AGGATGCAAA TGCAGCGCTG CCACAGTTCG CGCGCTTTTC CACGCAACGC ATCGCGCAGT 
TCGCACGGTT CGCTGCAGCA AATGGTGTCG CCCACGCGCA GTAGTCCGCC CAGCCGCTCG 
CACACCGCAT CCGCACTGGA AAGGCAGGCG GCCGCCCAGG CAGCCGCGAT TAATCAAAAG 
CAACAACAGT CGGCCGCTGC AGCTGCTGCT GTTGAATCTT CAAATGATTA TACGAAGTTT 
CATTTGCGTT TGGTCGACAA GCTGCGCAAG TCCTTTCGCA AGGATAGCGG TAAGCGGTCA 
TGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

CG42240 ( NM_001144692.2 ) cDNA ORF clone, Drosophila melanogaster(fruit fly) -> NP_001138164.1 Drosophila melanogaster uncharacterized protein, transcript variant A (CG42240), mRNA.

Price & Availability↑

CloneID	OFa02650
Clone ID Related Accession (Same CDS sequence)	NM_001298013.1 , NM_001144692.2
Accession Version	NM_001144692.2 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 543bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2019-04-24
Organism	Drosophila melanogaster(fruit fly)
Product	uncharacterized protein, isoform A
Comment	Comment: REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jul 15, 2014 this sequence version replaced NM_001144692.1. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.26 URL :: http://flybase.org ##Genome-Annotation-Data-END##

ATGGCGTTCA TGATGCCCGT GATGAAGAAC AATTACGATA TTTACAAGGA CACGCGTTCC 
CGCAAAACGT CAGAATGTTC GAATGCGAGT AGTAACGGTA CAACGGCTTT GGCCACCGCT 
CTTGGAACGC CCGCCCAGGG ACAACAACAA CAGCGACGCC GCAAGGTGTC CGAATGCAAG 
TCGGAGAGCT TCGCCACCTC ACCATCGCAC GGTCAACTGG GCGTGTCCTC CCCCCACCAA 
AGGATGCAAA TGCAGCGCTG CCACAGTTCG CGCGCTTTTC CACGCAACGC ATCGCGCAGT 
TCGCACGGTT CGCTGCAGCA AATGGTGTCG CCCACGCGCA GTAGTCCGCC CAGCCGCTCG 
CACACCGCAT CCGCACTGGA AAGGCAGGCG GCCGCCCAGG CAGCCGCGAT TAATCAAAAG 
CAACAACAGT CGGCCGCTGC AGCTGCTGCT GTTGAATCTT CAAATGATTA TACGAAGTTT 
CATTTGCGTT TGGTCGACAA GCTGCGCAAG TCCTTTCGCA AGGATAGCGG TAAGCGGTCA 
TGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_001138164.1
CDS	216..758
Translation	MAFMMPVMKNNYDIYKDTRSRKTSECSNASSNGTTALATALGTPAQGQQQQRRRKVSECKSESFATSPSHGQLGVSSPHQRMQMQRCHSSRAFPRNASRSSHGSLQQMVSPTRSSPPSRSHTASALERQAAAQAAAINQKQQQSAAAAAAVESSNDYTKFHLRLVDKLRKSFRKDSGKRS

Target ORF information:

RefSeq Version	NM_001144692.2
Organism	Drosophila melanogaster(fruit fly)
Definition	Drosophila melanogaster uncharacterized protein, transcript variant A (CG42240), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_001144692.2

ORF Insert Sequence:

ATGGCGTTCA TGATGCCCGT GATGAAGAAC AATTACGATA TTTACAAGGA CACGCGTTCC 
CGCAAAACGT CAGAATGTTC GAATGCGAGT AGTAACGGTA CAACGGCTTT GGCCACCGCT 
CTTGGAACGC CCGCCCAGGG ACAACAACAA CAGCGACGCC GCAAGGTGTC CGAATGCAAG 
TCGGAGAGCT TCGCCACCTC ACCATCGCAC GGTCAACTGG GCGTGTCCTC CCCCCACCAA 
AGGATGCAAA TGCAGCGCTG CCACAGTTCG CGCGCTTTTC CACGCAACGC ATCGCGCAGT 
TCGCACGGTT CGCTGCAGCA AATGGTGTCG CCCACGCGCA GTAGTCCGCC CAGCCGCTCG 
CACACCGCAT CCGCACTGGA AAGGCAGGCG GCCGCCCAGG CAGCCGCGAT TAATCAAAAG 
CAACAACAGT CGGCCGCTGC AGCTGCTGCT GTTGAATCTT CAAATGATTA TACGAAGTTT 
CATTTGCGTT TGGTCGACAA GCTGCGCAAG TCCTTTCGCA AGGATAGCGG TAAGCGGTCA 
TGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

CG42240 ( NM_001272340.2 ) cDNA ORF clone, Drosophila melanogaster(fruit fly) -> NP_001259269.1 Drosophila melanogaster uncharacterized protein, transcript variant B (CG42240), mRNA.

Price & Availability↑

CloneID	OFa03015
Clone ID Related Accession (Same CDS sequence)	NM_001272340.2
Accession Version	NM_001272340.2 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 1041bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2019-04-24
Organism	Drosophila melanogaster(fruit fly)
Product	uncharacterized protein, isoform B
Comment	Comment: REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jul 15, 2014 this sequence version replaced NM_001272340.1. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.26 URL :: http://flybase.org ##Genome-Annotation-Data-END##

ATGGCGTTCA TGATGCCCGT GATGAAGAAC AATTACGATA TTTACAAGGA CACGCGTTCC 
CGCAAAACGT CAGAATGTTC GAATGCGAGT AGTAACGGTA CAACGGCTTT GGCCACCGCT 
CTTGGAACGC CCGCCCAGGG ACAACAACAA CAGCGACGCC GCAAGGTGTC CGAATGCAAG 
TCGGAGAGCT TCGCCACCTC ACCATCGCAC GGTCAACTGG GCGTGTCCTC CCCCCACCAA 
AGGATGCAAA TGCAGCGCTG CCACAGTTCG CGCGCTTTTC CACGCAACGC ATCGCGCAGT 
TCGCACGGTT CGCTGCAGCA AATGGTGTCG CCCACGCGCA GTAGTCCGCC CAGCCGCTCG 
CACACCGCAT CCGCACTGGA AAGGCAGGCG GCCGCCCAGG CAGCCGCGAT TAATCAAAAG 
CAACAACAGT CGGCCGCTGC AGCTGCTGCT GTTGAATCTT CAAATGATTA TACGAAGTTT 
CATTTGCGTT TGGTCGACAA GCTGCGCAAG TCCTTTCGCA AGGATAGCGG TAAGCGGTCA 
TGAGAGCAGC GCAATCACAG CAACAACAAC CAAATCTACG ACAACAACAA TGCCAGCAGC 
AGCAGCACGG CGCTCCTTTC CATTTCCCAC AACAATAACA ACGACAACAA CGGAGCCGGG 
TGGAAAGTTA GTGACGGTGC CGATGCCATT TCCAGAGGAA GATCGCCTGG AAGAGATGTG 
GAGGAGTGCA GTTCTGCAAC GTTCGAGGCA CTGGAAGCGT GTTCGAGAGC AGCCGAAGCG 
ACAACACACA GAGAACGAGA GAGAGGCATG GTCAGTCGTT TGGGGATACG CTTCCGGCGA 
TACTGTAGAT TCCTGGCCCA CTCCCCCCAT GGAAGCGCTG CGGCGCCAGA AGACGAGACA 
GAGGCGGAGG CTAGCTCCTT GGAGCAGCTG ACCGGCAGCA GGAGCAGCAG TCGCAGTCGC 
CGACGGCGCA GCAGCAGCAT TGGGAGCGCC GGCAGCCGGC TGAAGATGCG ACTGCGGCGC 
TGCACTTCGT CGCCAGGATA A

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_001259269.1
CDS	216..1256
Translation	MAFMMPVMKNNYDIYKDTRSRKTSECSNASSNGTTALATALGTPAQGQQQQRRRKVSECKSESFATSPSHGQLGVSSPHQRMQMQRCHSSRAFPRNASRSSHGSLQQMVSPTRSSPPSRSHTASALERQAAAQAAAINQKQQQSAAAAAAVESSNDYTKFHLRLVDKLRKSFRKDSGKRS*EQRNHSNNNQIYDNNNASSSSTALLSISHNNNNDNNGAGWKVSDGADAISRGRSPGRDVEECSSATFEALEACSRAAEATTHRERERGMVSRLGIRFRRYCRFLAHSPHGSAAAPEDETEAEASSLEQLTGSRSSSRSRRRRSSSIGSAGSRLKMRLRRCTSSPG

Target ORF information:

RefSeq Version	NM_001272340.2
Organism	Drosophila melanogaster(fruit fly)
Definition	Drosophila melanogaster uncharacterized protein, transcript variant B (CG42240), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_001272340.2

ORF Insert Sequence:

ATGGCGTTCA TGATGCCCGT GATGAAGAAC AATTACGATA TTTACAAGGA CACGCGTTCC 
CGCAAAACGT CAGAATGTTC GAATGCGAGT AGTAACGGTA CAACGGCTTT GGCCACCGCT 
CTTGGAACGC CCGCCCAGGG ACAACAACAA CAGCGACGCC GCAAGGTGTC CGAATGCAAG 
TCGGAGAGCT TCGCCACCTC ACCATCGCAC GGTCAACTGG GCGTGTCCTC CCCCCACCAA 
AGGATGCAAA TGCAGCGCTG CCACAGTTCG CGCGCTTTTC CACGCAACGC ATCGCGCAGT 
TCGCACGGTT CGCTGCAGCA AATGGTGTCG CCCACGCGCA GTAGTCCGCC CAGCCGCTCG 
CACACCGCAT CCGCACTGGA AAGGCAGGCG GCCGCCCAGG CAGCCGCGAT TAATCAAAAG 
CAACAACAGT CGGCCGCTGC AGCTGCTGCT GTTGAATCTT CAAATGATTA TACGAAGTTT 
CATTTGCGTT TGGTCGACAA GCTGCGCAAG TCCTTTCGCA AGGATAGCGG TAAGCGGTCA 
TGAGAGCAGC GCAATCACAG CAACAACAAC CAAATCTACG ACAACAACAA TGCCAGCAGC 
AGCAGCACGG CGCTCCTTTC CATTTCCCAC AACAATAACA ACGACAACAA CGGAGCCGGG 
TGGAAAGTTA GTGACGGTGC CGATGCCATT TCCAGAGGAA GATCGCCTGG AAGAGATGTG 
GAGGAGTGCA GTTCTGCAAC GTTCGAGGCA CTGGAAGCGT GTTCGAGAGC AGCCGAAGCG 
ACAACACACA GAGAACGAGA GAGAGGCATG GTCAGTCGTT TGGGGATACG CTTCCGGCGA 
TACTGTAGAT TCCTGGCCCA CTCCCCCCAT GGAAGCGCTG CGGCGCCAGA AGACGAGACA 
GAGGCGGAGG CTAGCTCCTT GGAGCAGCTG ACCGGCAGCA GGAGCAGCAG TCGCAGTCGC 
CGACGGCGCA GCAGCAGCAT TGGGAGCGCC GGCAGCCGGC TGAAGATGCG ACTGCGGCGC 
TGCACTTCGT CGCCAGGATA A

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PubMed

Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data.
G3 (Bethesda, Md.)5(8)1721-36(2015 Jun)
Matthews BB,Dos Santos G,Crosby MA,Emmert DB,St Pierre SE,Gramates LS,Zhou P,Schroeder AJ,Falls K,Strelets V,Russo SM,Gelbart WM,

Gene Model Annotations for Drosophila melanogaster: The Rule-Benders.
G3 (Bethesda, Md.)5(8)1737-49(2015 Jun)
Crosby MA,Gramates LS,Dos Santos G,Matthews BB,St Pierre SE,Zhou P,Schroeder AJ,Falls K,Emmert DB,Russo SM,Gelbart WM,

Sequence finishing and mapping of Drosophila melanogaster heterochromatin.
Science (New York, N.Y.)316(5831)1625-8(2007 Jun)
Hoskins RA,Carlson JW,Kennedy C,Acevedo D,Evans-Holm M,Frise E,Wan KH,Park S,Mendez-Lago M,Rossi F,Villasante A,Dimitri P,Karpen GH,Celniker SE

The Release 5.1 annotation of Drosophila melanogaster heterochromatin.
Science (New York, N.Y.)316(5831)1586-91(2007 Jun)
Smith CD,Shu S,Mungall CJ,Karpen GH

Combined evidence annotation of transposable elements in genome sequences.
PLoS computational biology1(2)166-75(2005 Jul)
Quesneville H,Bergman CM,Andrieu O,Autard D,Nouaud D,Ashburner M,Anxolabehere D

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CG42240 cDNA ORF clone, Drosophila melanogaster(fruit fly)

Gene

Clones

gRNAs

Related articles in PubMed

Target ORF information:

Target ORF information:

ORF Insert Sequence:

Target ORF information:

Target ORF information:

ORF Insert Sequence:

Target ORF information:

Target ORF information:

ORF Insert Sequence:

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